Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008709

Physical Location & Seq

Genomic Coordinates Forward (+)

13765101 .. 13766517

Gene Structure 1417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1146400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGATGGAAGCCGATAAGCCAACGACGATGATCTGCACATTGCTAGCAATAGACAACACCACCGGCTTCTCCTACAGAGTCTGCTCCGTCTGCGAGCGGACTCTCCCCGACAACCCTTCCTCCCTCTGCAAATTCTGCAGCGTCAATGCCTTCAACCCCCGCTTCCCACGCACCAAACGCCTCTTTCGCCTTCTCATGTCAATAGCTTCAGATACAAAAGTGCTTAATGTGATATGCTTTGATAGGGCTGCCAAGGTTCTGTTTGGTTGCTCTGCTGATGAGTTTTTTGACTTCGCCAAGTTTCACCCTTTTGCTGCTGTTAATGCTAGTAGAATTCTGGACGGAGAGATGTTTAAAATGACACTATCCAAACCAAAGAACGGGAATGCACAACATCTGCGAGCGGTTCAAGTTGTTCCATTGAGGTCTGGTTTTCGGCCAGCAATTGTGAGCTTGAGGGAATTGTATGGAGTAAGAAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rep_fac-A_C

Protein Analysis

162

Amino Acids

18.01

Weight (kDa)

9.5

Isoelectric Point (pI)

28.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28105 AT2G28105
fragaria_vesca	FvH4_3g30910 FvH4_3g30910 FvH4_3g30910 FvH4_3g30910 FvH4_3g30910
malus_domestica	MD11G1146400.v1.1
prunus_persica	Prupe.6G109500_v2.0.a1 Prupe.6G109500_v2.0.a1
pyrus_communis	pycom11g11940
rosa_chinensis	RchiOBHm_Chr5g0057451
rosa_laevigata	RLG00000035155
rosa_multiflora	Rmu_co8372183.1_g000001 Rmu_sc0003730.1_g000013 Rmu_sc0028908.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023000
rosa_rugosa	Rorug05G0307400
rosa_samantha	Rh5AG375900 Rh5BG386700 Rh5CG410200 Rh5DG401000
rosa_wichuraiana	Rw5G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	97, 404
AciI	CCGC	3 cut(s)	97, 160, 404
AcoI	YGGCCR	1 cut(s)	437
AcsI	RAATTY	2 cut(s)	131, 333
AcuI	CTGAAG	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	2 cut(s)	154, 410
AluBI	AGCT	3 cut(s)	206, 453, 480
AluI	AGCT	3 cut(s)	206, 453, 480
AlwNI	CAGNNNCTG	1 cut(s)	81
AoxI	GGCC	1 cut(s)	437
ApeKI	GCWGC	3 cut(s)	138, 248, 314
ApoI	RAATTY	2 cut(s)	131, 333
AsuHPI	GGTGA	1 cut(s)	296
AsuNHI	GCTAGC	1 cut(s)	43
BaeI	ACNNNNGTAYC	2 cut(s)	204, 237
BbvI	GCAGC	3 cut(s)	150, 235, 301
BfaI	CTAG	2 cut(s)	44, 327
BfmI	CTRYAG	2 cut(s)	73, 136
BisI	GCNGC	3 cut(s)	139, 249, 315
BlsI	GCNGC	3 cut(s)	140, 250, 316
BmtI	GCTAGC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	475
BsaJI	CCNNGG	1 cut(s)	252
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse118I	RCCGGY	1 cut(s)	62
Bse3DI	GCAATG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMI	GCAATG	1 cut(s)	38
BseXI	GCAGC	3 cut(s)	150, 235, 301
BsgI	GTGCAG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	63
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	3 cut(s)	97, 160, 404
BspANI	GGCC	1 cut(s)	439
BspMAI	CTGCAG	1 cut(s)	140
BspOI	GCTAGC	1 cut(s)	47
BsrBI	CCGCTC	2 cut(s)	97, 404
BsrDI	GCAATG	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	252
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstC8I	GCNNGC	4 cut(s)	45, 95, 402, 441
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 135, 168, 177, 186, 323
BstSFI	CTRYAG	2 cut(s)	73, 136
BstV1I	GCAGC	3 cut(s)	150, 235, 301
BsuRI	GGCC	1 cut(s)	439
Cac8I	GCNNGC	4 cut(s)	45, 95, 402, 441
CaiI	CAGNNNCTG	1 cut(s)	81
Cfr10I	RCCGGY	1 cut(s)	62
CseI	GACGC	1 cut(s)	130
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	8 cut(s)	11, 19, 66, 206, 248, 439, 453, 480
CviKI_1	RGCY	8 cut(s)	11, 19, 66, 206, 248, 439, 453, 480
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
DraI	TTTAAA	1 cut(s)	355
EaeI	YGGCCR	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	199
FaiI	YATR	3 cut(s)	197, 235, 468
FalI	AAGNNNNNCTT	1 cut(s)	466
FatI	CATG	1 cut(s)	195
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	3 cut(s)	139, 249, 315
Fsp4HI	GCNGC	3 cut(s)	139, 249, 315
FspBI	CTAG	2 cut(s)	44, 327
GluI	GCNGC	3 cut(s)	139, 249, 315
HaeIII	GGCC	1 cut(s)	439
HapII	CCGG	1 cut(s)	63
HgaI	GACGC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	199
HinfI	GANTC	2 cut(s)	78, 100
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	1 cut(s)	296
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	1 cut(s)	338
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	3 cut(s)	126, 160, 200
HpyCH4V	TGCA	4 cut(s)	36, 129, 138, 389
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 135, 168, 177, 186, 323
Hsp92II	CATG	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	4 cut(s)	76, 323, 414, 453
Lsp1109I	GCAGC	3 cut(s)	150, 235, 301
MaeI	CTAG	2 cut(s)	44, 327
MalI	GATC	1 cut(s)	32
MbiI	CCGCTC	2 cut(s)	97, 404
MboI	GATC	1 cut(s)	30
MfeI	CAATTG	1 cut(s)	444
MluCI	AATT	4 cut(s)	131, 333, 444, 461
MlyI	GAGTC	2 cut(s)	87, 94
MnlI	CCTC	5 cut(s)	130, 134, 191, 417, 450
MseI	TTAA	4 cut(s)	225, 321, 354, 484
MspI	CCGG	1 cut(s)	63
MunI	CAATTG	1 cut(s)	444
Mva1269I	GAATGC	1 cut(s)	391
MwoI	GCNNNNNNNGC	6 cut(s)	90, 135, 168, 177, 186, 323
NdeII	GATC	1 cut(s)	30
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	199
PctI	GAATGC	1 cut(s)	391
PkrI	GCNGC	3 cut(s)	140, 250, 316
PleI	GAGTC	2 cut(s)	86, 94
PpsI	GAGTC	2 cut(s)	86, 94
PstI	CTGCAG	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	81
SaqAI	TTAA	4 cut(s)	225, 321, 354, 484
SatI	GCNGC	3 cut(s)	139, 249, 315
Sau3AI	GATC	1 cut(s)	30
SchI	GAGTC	2 cut(s)	87, 94
SetI	ASST	5 cut(s)	208, 258, 428, 455, 482
SfcI	CTRYAG	2 cut(s)	73, 136
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	4 cut(s)	131, 333, 444, 461
SsiI	CCGC	3 cut(s)	97, 160, 404
SspMI	CTAG	2 cut(s)	44, 327
StyI	CCWWGG	1 cut(s)	252
TasI	AATT	4 cut(s)	131, 333, 444, 461
Tru1I	TTAA	4 cut(s)	225, 321, 354, 484
Tru9I	TTAA	4 cut(s)	225, 321, 354, 484
TseI	GCWGC	3 cut(s)	138, 248, 314
TspGWI	ACGGA	2 cut(s)	76, 357
XapI	RAATTY	2 cut(s)	131, 333
XspI	CTAG	2 cut(s)	44, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.