Prupe.6G109500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0008709
Physical Location & Seq
Forward (+)
7845415 .. 7847975
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G109500.2

Sequence Viewer

Length: 489 bp
ATGGAAGCCGAAAAGCCAACAACGATGCTGTGCACAGTGCTAGCAATAGACCACACCGACTTCTCTTACAGAGTGTGCTCCGTCTGCGAGAGGACTCTCCCTGACAATCCAACTTCTCTTTGCAAATTCTGCAGCGTCAATGCCTTCAACCCCCGTTTTTCTCGCTCAAAACGCCTCTTCCGCCTTCTTATGTCAATAGCCTCAGATACAAAGGTGTTTACTGTGATATGTTTTGATAGGGCTGCCAAGGTTCTGTTTGGTTGTTCTGCTGATGAGTTTTTTGACTTTGCCAAGTTTCACCCGTTTGCTGCTGTTAATGTGAGTAGAATTCTGGAGGGAGAGATGTTTAAAATGACACTATCCAAACCAAAGAATGGGAATGCACAACATCTGCGAGCGGTTCAAGTTATTCCATTGAGGTCTGGTTTTCAGCCAGCAATTGTGACGTTGAGGGAATTGTATGGAGTATGTGAAGAACAAAGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rep_fac-A_C

Protein Analysis

163

Amino Acids

18.36

Weight (kDa)

8.99

Isoelectric Point (pI)

27.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 374
AccBSI CCGCTC 1 cut(s) 398
AciI CCGC 2 cut(s) 181, 398
AcsI RAATTY 2 cut(s) 125, 327
AfiI CCNNNNNNNGG 1 cut(s) 374
AgsI TTSAA 2 cut(s) 148, 404
Alw21I GWGCWC 2 cut(s) 35, 80
Alw44I GTGCAC 1 cut(s) 31
ApaLI GTGCAC 1 cut(s) 31
ApeKI GCWGC 3 cut(s) 132, 242, 308
ApoI RAATTY 2 cut(s) 125, 327
AsuHPI GGTGA 1 cut(s) 290
AsuNHI GCTAGC 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 35
BaeI ACNNNNGTAYC 2 cut(s) 198, 231
Bbv12I GWGCWC 2 cut(s) 35, 80
BbvI GCAGC 3 cut(s) 144, 229, 295
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 1 cut(s) 130
BisI GCNGC 3 cut(s) 133, 243, 309
BlsI GCNGC 3 cut(s) 134, 244, 310
BmsI GCATC 1 cut(s) 15
BmtI GCTAGC 1 cut(s) 44
BpmI CTGGAG 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMII CTCAG 1 cut(s) 216
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 3 cut(s) 144, 229, 295
BsiHKAI GWGCWC 2 cut(s) 35, 80
BslI CCNNNNNNNGG 1 cut(s) 374
BsmI GAATGC 1 cut(s) 385
Bsp1286I GDGCHC 2 cut(s) 35, 80
BspACI CCGC 2 cut(s) 181, 398
BspCNI CTCAG 1 cut(s) 215
BspMAI CTGCAG 1 cut(s) 134
BspOI GCTAGC 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 398
BssECI CCNNGG 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 37, 223
Bst6I CTCTTC 1 cut(s) 182
BstAPI GCANNNNNTGC 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 42, 396, 435
BstDEI CTNAG 1 cut(s) 202
BstMWI GCNNNNNNNGC 4 cut(s) 84, 129, 171, 180
BstSFI CTRYAG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 35
BstV1I GCAGC 3 cut(s) 144, 229, 295
BtsIMutI CAGTG 1 cut(s) 42
Cac8I GCNNGC 3 cut(s) 42, 396, 435
CseI GACGC 1 cut(s) 124
CviJI RGCY 5 cut(s) 8, 16, 200, 242, 433
CviKI_1 RGCY 5 cut(s) 8, 16, 200, 242, 433
DdeI CTNAG 1 cut(s) 202
DraI TTTAAA 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaiI YATR 4 cut(s) 191, 229, 462, 469
Fnu4HI GCNGC 3 cut(s) 133, 243, 309
Fsp4HI GCNGC 3 cut(s) 133, 243, 309
FspBI CTAG 1 cut(s) 41
GluI GCNGC 3 cut(s) 133, 243, 309
GsuI CTGGAG 1 cut(s) 353
HgaI GACGC 1 cut(s) 124
HinfI GANTC 1 cut(s) 94
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 33, 219
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 2 cut(s) 33, 219
HpyAV CCTTC 2 cut(s) 154, 194
HpyCH4III ACNGT 2 cut(s) 37, 223
HpyCH4IV ACGT 1 cut(s) 446
HpyCH4V TGCA 4 cut(s) 33, 123, 132, 383
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 129, 171, 180
HpyF3I CTNAG 1 cut(s) 202
HpySE526I ACGT 1 cut(s) 446
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 4 cut(s) 114, 317, 408, 447
Lsp1109I GCAGC 3 cut(s) 144, 229, 295
LweI GCATC 1 cut(s) 15
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 446
MaeIII GTNAC 1 cut(s) 442
MbiI CCGCTC 1 cut(s) 398
MboII GAAGA 2 cut(s) 169, 485
MfeI CAATTG 1 cut(s) 438
MhlI GDGCHC 2 cut(s) 35, 80
MluCI AATT 4 cut(s) 125, 327, 438, 455
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 6 cut(s) 84, 185, 211, 328, 411, 444
MseI TTAA 2 cut(s) 315, 348
MunI CAATTG 1 cut(s) 438
Mva1269I GAATGC 1 cut(s) 385
MwoI GCNNNNNNNGC 4 cut(s) 84, 129, 171, 180
NheI GCTAGC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 442
PctI GAATGC 1 cut(s) 385
PflMI CCANNNNNTGG 1 cut(s) 374
PkrI GCNGC 3 cut(s) 134, 244, 310
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PstI CTGCAG 1 cut(s) 134
SaqAI TTAA 2 cut(s) 315, 348
SatI GCNGC 3 cut(s) 133, 243, 309
SchI GAGTC 1 cut(s) 88
SduI GDGCHC 2 cut(s) 35, 80
SetI ASST 4 cut(s) 216, 252, 422, 449
SfaNI GCATC 1 cut(s) 15
SfcI CTRYAG 1 cut(s) 130
Sse9I AATT 4 cut(s) 125, 327, 438, 455
SsiI CCGC 2 cut(s) 181, 398
SspMI CTAG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 2 cut(s) 37, 223
TaiI ACGT 1 cut(s) 449
TasI AATT 4 cut(s) 125, 327, 438, 455
Tru1I TTAA 2 cut(s) 315, 348
Tru9I TTAA 2 cut(s) 315, 348
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 3 cut(s) 132, 242, 308
Tsp45I GTSAC 1 cut(s) 442
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 1 cut(s) 42
Van91I CCANNNNNTGG 1 cut(s) 374
VneI GTGCAC 1 cut(s) 31
XapI RAATTY 2 cut(s) 125, 327
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.