Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015889

Physical Location & Seq

Genomic Coordinates Forward (+)

12023940 .. 12025370

Gene Structure 1431 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGATGATGGGTCAAGATGAGGTTGGGAGTGATCAGACGCAAATCATAAAAGGGAAACGTACGAAGCGACAAAGATCGTCTTCGACGTTTGTGGTGACGGCGGCGACAACAGTGACTTCAACAAGTTCATCGGCCGGTGGAAGTGGAGGAGAAAGAGCTGTTTCAGATGAATACAACTCGGCGGTTTCGTCTCCGGTGACTACTGATTGTACGCAAGAAGAAGAAGACATGGCGATTTGTCTCATCATGTTAGCTCGTGGGACAGTTCTTCCATCGCCGGATCTCAAGAACTCGAGAAAAATTCATCAGAAGATTTCGTCGGAGAATTCTAGTTTCTATGTGTACGAGTGTAAAACGTGTAACCGGACGTTTTCGTCGTTCCAAGCACTTGGTGGACACAGAGCGAGCCACAAGAAGCCGAGGACGTCGACTGAGGAAAAGACTAGACTACCCCTGACGCAACCCAAGTCTAGTGCATCAGAAGAAGGGCAAAACAGTCATTTCAAAGTTTCCGGCTCAGCCCTAGCTTCACAGGCAAGTAACATCATCAACAAGGCAAACAAAGTACACGAGTGTTCCATCTGCGGTTCTGAGTTCACTTCCGGGCAAGCTCTCGGTGGTCACATGAGGCGGCACAGGACAGCCGTAACCACGATTAGCCCCGTTGCAGCCACCGCAGAAGTAAGCAGAAACAGTACAGAGGAAGAGATTGAGATCAATATAGGCCGTTCGATGGAACAGCAGAGGAAATATCTACCGTTGGATCTTAATCTACCAGCACCAGAAGATGATCTAAGAGAGTCAAAGTTTCAAGGGATAGTATTCTCAGCAACACCAGCGTTAATAGATTGTCATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

286

Amino Acids

31.05

Weight (kDa)

7.63

Isoelectric Point (pI)

67.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	114 - 140	1.1e-12	C2H2-type zinc finger
zf-C2H2_6	PF13912	189 - 214	3.9e-11	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28200
fragaria_vesca	FvH4_3g30610
malus_domestica	MD03G1128800.v1.1
prunus_persica	Prupe.6G113100_v2.0.a1
pyrus_communis	pycom11g12160
rosa_chinensis	RchiOBHm_Chr5g0056681
rosa_laevigata	RLG00000035120
rosa_multiflora	Rmu_sc0005086.1_g000004
rosa_roxburghii	Rroxscaffold_1G00023670
rosa_rugosa	Rorug05G0301300
rosa_samantha	Rh5AG371600 Rh5BG383500 Rh5CG406600 Rh5DG396500
rosa_wichuraiana	Rw5G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	373
AatII	GACGTC	1 cut(s)	428
AccI	GTMKAC	1 cut(s)	428
AciI	CCGC	5 cut(s)	101, 182, 585, 631, 675
AclWI	GGATC	2 cut(s)	288, 771
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	2 cut(s)	300, 325
AcyI	GRCGYC	1 cut(s)	425
AdeI	CACNNNGTG	1 cut(s)	392
AfaI	GTAC	5 cut(s)	61, 211, 344, 567, 697
AfiI	CCNNNNNNNGG	1 cut(s)	733
AflIII	ACRYGT	1 cut(s)	356
AgsI	TTSAA	3 cut(s)	120, 505, 812
AluBI	AGCT	4 cut(s)	158, 254, 527, 611
AluI	AGCT	4 cut(s)	158, 254, 527, 611
Alw26I	GTCTC	2 cut(s)	195, 245
AlwI	GGATC	2 cut(s)	288, 771
Ama87I	CYCGRG	1 cut(s)	292
AoxI	GGCC	2 cut(s)	132, 724
ApeKI	GCWGC	1 cut(s)	668
ApoI	RAATTY	2 cut(s)	300, 325
AsuC2I	CCSGG	1 cut(s)	604
AsuHPI	GGTGA	2 cut(s)	106, 208
AvaI	CYCGRG	1 cut(s)	292
BauI	CACGAG	2 cut(s)	255, 569
BbsI	GAAGAC	2 cut(s)	72, 231
BbvI	GCAGC	1 cut(s)	680
BccI	CCATC	3 cut(s)	280, 587, 727
BceAI	ACGGC	3 cut(s)	114, 629, 711
BclI	TGATCA	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	604
BcoDI	GTCTC	2 cut(s)	195, 245
BfaI	CTAG	5 cut(s)	330, 444, 471, 524, 859
BisI	GCNGC	3 cut(s)	102, 632, 669
BlpI	GCTNAGC	1 cut(s)	517
BlsI	GCNGC	3 cut(s)	103, 633, 670
Bme1390I	CCNGG	1 cut(s)	604
BmeT110I	CYCGRG	1 cut(s)	292
BmrFI	CCNGG	1 cut(s)	604
BmsI	GCATC	1 cut(s)	485
BpiI	GAAGAC	2 cut(s)	72, 231
Bpu1102I	GCTNAGC	1 cut(s)	517
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	604
BsaBI	GATNNNNATC	2 cut(s)	713, 768
BsaHI	GRCGYC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	419
BsaWI	WCCGGW	2 cut(s)	193, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	733
Bse118I	RCCGGY	1 cut(s)	134
Bse8I	GATNNNNATC	2 cut(s)	713, 768
BseDI	CCNNGG	1 cut(s)	419
BseJI	GATNNNNATC	2 cut(s)	713, 768
BseLI	CCNNNNNNNGG	1 cut(s)	733
BseMII	CTCAG	4 cut(s)	423, 531, 582, 840
BseRI	GAGGAG	1 cut(s)	162
BseX3I	CGGCCG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	680
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	134, 726
BsiEI	CGRYCG	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	6 cut(s)	135, 194, 278, 364, 513, 603
BsiWI	CGTACG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	733
BsmAI	GTCTC	2 cut(s)	195, 245
BsmBI	CGTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	2 cut(s)	134, 726
BsoBI	CYCGRG	1 cut(s)	292
Bsp143I	GATC	6 cut(s)	31, 74, 280, 714, 763, 790
Bsp1720I	GCTNAGC	1 cut(s)	517
BspACI	CCGC	5 cut(s)	101, 182, 585, 631, 675
BspANI	GGCC	2 cut(s)	134, 726
BspCNI	CTCAG	4 cut(s)	424, 530, 583, 839
BspPI	GGATC	2 cut(s)	288, 771
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	6 cut(s)	31, 74, 280, 714, 763, 790
BssNI	GRCGYC	1 cut(s)	425
BssSI	CACGAG	2 cut(s)	255, 569
Bst2BI	CACGAG	2 cut(s)	255, 569
Bst4CI	ACNGT	5 cut(s)	112, 265, 497, 695, 759
Bst6I	CTCTTC	1 cut(s)	699
BstACI	GRCGYC	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	406, 609
BstDEI	CTNAG	5 cut(s)	432, 517, 591, 794, 826
BstKTI	GATC	6 cut(s)	34, 77, 283, 717, 766, 793
BstMAI	GTCTC	2 cut(s)	195, 245
BstMBI	GATC	6 cut(s)	31, 74, 280, 714, 763, 790
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	3 cut(s)	533, 674, 836
BstSCI	CCNGG	1 cut(s)	602
BstV1I	GCAGC	1 cut(s)	680
BstV2I	GAAGAC	2 cut(s)	72, 231
BstX2I	RGATCY	2 cut(s)	280, 763
BstXI	CCANNNNNNTGG	1 cut(s)	389
BstYI	RGATCY	2 cut(s)	280, 763
BstZI	CGGCCG	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	134, 726
BtgZI	GCGATG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	2 cut(s)	406, 609
Cfr10I	RCCGGY	1 cut(s)	134
CseI	GACGC	2 cut(s)	46, 466
Csp6I	GTAC	5 cut(s)	60, 210, 343, 566, 696
CviAII	CATG	3 cut(s)	229, 247, 625
CviQI	GTAC	5 cut(s)	60, 210, 343, 566, 696
DdeI	CTNAG	5 cut(s)	432, 517, 591, 794, 826
DpnI	GATC	6 cut(s)	33, 76, 282, 716, 765, 792
DpnII	GATC	6 cut(s)	31, 74, 280, 714, 763, 790
DraIII	CACNNNGTG	1 cut(s)	392
DrdI	GACNNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	132
EagI	CGGCCG	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	699
EarI	CTCTTC	1 cut(s)	699
EclXI	CGGCCG	1 cut(s)	132
Eco52I	CGGCCG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	325
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	3 cut(s)	232, 250, 628
FaiI	YATR	6 cut(s)	47, 230, 248, 339, 626, 722
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	3 cut(s)	228, 246, 624
FbaI	TGATCA	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	428
Fnu4HI	GCNGC	3 cut(s)	102, 632, 669
Fsp4HI	GCNGC	3 cut(s)	102, 632, 669
FspBI	CTAG	5 cut(s)	330, 444, 471, 524, 859
GluI	GCNGC	3 cut(s)	102, 632, 669
HaeIII	GGCC	2 cut(s)	134, 726
HapII	CCGG	6 cut(s)	135, 194, 278, 364, 513, 603
HgaI	GACGC	2 cut(s)	46, 466
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	3 cut(s)	232, 250, 628
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HinfI	GANTC	1 cut(s)	800
HpaII	CCGG	6 cut(s)	135, 194, 278, 364, 513, 603
HphI	GGTGA	2 cut(s)	106, 208
Hpy166II	GTNNAC	5 cut(s)	343, 395, 429, 568, 597
Hpy188I	TCNGA	6 cut(s)	36, 166, 309, 322, 481, 592
Hpy188III	TCNNGA	3 cut(s)	14, 286, 294
Hpy8I	GTNNAC	5 cut(s)	343, 395, 429, 568, 597
Hpy99I	CGWCG	4 cut(s)	88, 322, 379, 430
HpyAV	CCTTC	1 cut(s)	479
HpyCH4III	ACNGT	5 cut(s)	112, 265, 497, 695, 759
HpyCH4IV	ACGT	5 cut(s)	58, 86, 356, 368, 425
HpyCH4V	TGCA	2 cut(s)	476, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	533, 674, 836
HpyF3I	CTNAG	5 cut(s)	432, 517, 591, 794, 826
HpySE526I	ACGT	5 cut(s)	58, 86, 356, 368, 425
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	3 cut(s)	232, 250, 628
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	6 cut(s)	31, 74, 280, 714, 763, 790
Lsp1109I	GCAGC	1 cut(s)	680
LweI	GCATC	1 cut(s)	485
MaeI	CTAG	5 cut(s)	330, 444, 471, 524, 859
MaeII	ACGT	5 cut(s)	58, 86, 356, 368, 425
MaeIII	GTNAC	7 cut(s)	94, 112, 196, 359, 539, 620, 646
MalI	GATC	6 cut(s)	33, 76, 282, 716, 765, 792
MboI	GATC	6 cut(s)	31, 74, 280, 714, 763, 790
MboII	GAAGA	9 cut(s)	72, 230, 233, 236, 260, 322, 494, 716, 797
MflI	RGATCY	2 cut(s)	280, 763
MluCI	AATT	2 cut(s)	300, 325
MlyI	GAGTC	1 cut(s)	809
MmeI	TCCRAC	2 cut(s)	300, 741
MnlI	CCTC	7 cut(s)	13, 140, 414, 427, 621, 694, 738
MseI	TTAA	2 cut(s)	768, 842
MspI	CCGG	6 cut(s)	135, 194, 278, 364, 513, 603
MspR9I	CCNGG	1 cut(s)	604
MwoI	GCNNNNNNNGC	3 cut(s)	533, 674, 836
NciI	CCSGG	1 cut(s)	604
NdeII	GATC	6 cut(s)	31, 74, 280, 714, 763, 790
NlaIII	CATG	3 cut(s)	232, 250, 628
NmeAIII	GCCGAG	2 cut(s)	158, 444
NmuCI	GTSAC	4 cut(s)	94, 112, 196, 620
PaeR7I	CTCGAG	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	4 cut(s)	64, 83, 185, 374
Pfl23II	CGTACG	1 cut(s)	59
PkrI	GCNGC	3 cut(s)	103, 633, 670
PleI	GAGTC	1 cut(s)	808
PpsI	GAGTC	1 cut(s)	808
PspLI	CGTACG	1 cut(s)	59
PsuI	RGATCY	2 cut(s)	280, 763
RsaI	GTAC	5 cut(s)	61, 211, 344, 567, 697
RsaNI	GTAC	5 cut(s)	60, 210, 343, 566, 696
SalI	GTCGAC	1 cut(s)	427
SaqAI	TTAA	2 cut(s)	768, 842
SatI	GCNGC	3 cut(s)	102, 632, 669
Sau3AI	GATC	6 cut(s)	31, 74, 280, 714, 763, 790
SchI	GAGTC	1 cut(s)	809
ScrFI	CCNGG	1 cut(s)	604
SfaNI	GCATC	1 cut(s)	485
Sfr274I	CTCGAG	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	292
SmlI	CTYRAG	2 cut(s)	284, 292
SmoI	CTYRAG	2 cut(s)	284, 292
Sse9I	AATT	2 cut(s)	300, 325
SsiI	CCGC	5 cut(s)	101, 182, 585, 631, 675
SspMI	CTAG	5 cut(s)	330, 444, 471, 524, 859
StyD4I	CCNGG	1 cut(s)	602
TaaI	ACNGT	5 cut(s)	112, 265, 497, 695, 759
TaiI	ACGT	5 cut(s)	61, 89, 359, 371, 428
TaqI	TCGA	4 cut(s)	83, 293, 428, 731
TasI	AATT	2 cut(s)	300, 325
TatI	WGTACW	2 cut(s)	565, 695
TauI	GCSGC	2 cut(s)	104, 634
Tru1I	TTAA	2 cut(s)	768, 842
Tru9I	TTAA	2 cut(s)	768, 842
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	4 cut(s)	94, 112, 196, 620
TseI	GCWGC	1 cut(s)	668
Tsp45I	GTSAC	4 cut(s)	94, 112, 196, 620
TspDTI	ATGAA	3 cut(s)	117, 183, 293
TspRI	CASTG	1 cut(s)	117
XapI	RAATTY	2 cut(s)	300, 325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	389
XhoI	CTCGAG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	428
XspI	CTAG	5 cut(s)	330, 444, 471, 524, 859
ZraI	GACGTC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.