Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015889

Physical Location & Seq

Genomic Coordinates Forward (+)

8158799 .. 8160139

Gene Structure 1341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G113100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAAGGCCAAGAAGAATTGGTTTTGAGCAGTGATCAAGCATCCCAGATGATCATGATCAAAGGCAAGCGCACCAAGCGCCCGAGGCCTCTGTCCCCGAACGGCGTCGTGGCTGCGGGGACGTCTAGCTCATCAAGCGCCTGTGGTGGTGGTGGTGCTATGGGAGGAGATCATGAGTATAATTATTATGGTAATTCGTTTACATCGCCCACAACTTCTGGTGAGATCTATGAGAGTACTGAGGAAGAAGAGGACATGGCAAATTGCCTAATTCTCTTGGCTCAAGGAGATCATGTGACTGTTAACCCAAAGCAGATCTTTGAGCAAAGACTAGAACAAACCAGTAACATGGGCAAGGCTGGTTTCTTTGTCTATGAGTGCAAAACATGTAACAGAAGCTTCCCTTCATTTCAAGCACTTGGTGGCCACAGAGCAAGTCACAAGAAGCCCAAGGCCATGAGCACAGAGGATAAAAAGCCAGCGCCAGCCCATTTTATCCCAGCCTCCACTTTTGAGGAATTTGAAGATCAAAGCAAGCAGTTCATCAAATATAAGAGCAGCCCACCTCCTGCAATTTCAAGCCAAATAGGAAGCAAGCCCAAAATTCATGAGTGTTCAATTTGTGGCTCTGAGTTCACATCTGGGCAAGCTCTTGGTGGACACATGAGAAGGCACAGAGCAGCAGCAGCAGCAGCCAACAACAGTACTAATCATGTGGCGGCTTTGCCTAGCAATATTGGCACAAGTACCAAACTGCAGAGAACTGTTCTTCCACTGGATCTCAACCTTCCTGCACCAGAAGATAATGATCATCATCACCACCAGCTTCATCATCATCATCAACACCGTGACTCTAAGTTTCAATTTGTGCCTACCCAACAAACAACTCTTGTCTTCAACGCCCCTGCTTTGGTGGATTGTCATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

310

Amino Acids

33.74

Weight (kDa)

6.83

Isoelectric Point (pI)

63.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28200
fragaria_vesca	FvH4_3g30610
malus_domestica	MD03G1128800.v1.1
prunus_persica	Prupe.6G113100_v2.0.a1
pyrus_communis	pycom11g12160
rosa_chinensis	RchiOBHm_Chr5g0056681
rosa_laevigata	RLG00000035120
rosa_multiflora	Rmu_sc0005086.1_g000004
rosa_roxburghii	Rroxscaffold_1G00023670
rosa_rugosa	Rorug05G0301300
rosa_samantha	Rh5AG371600 Rh5BG383500 Rh5CG406600 Rh5DG396500
rosa_wichuraiana	Rw5G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	125
AciI	CCGC	2 cut(s)	116, 719
AclWI	GGATC	1 cut(s)	786
AcoI	YGGCCR	1 cut(s)	424
AcsI	RAATTY	2 cut(s)	518, 603
AcyI	GRCGYC	2 cut(s)	105, 122
AdeI	CACNNNGTG	1 cut(s)	422
AfaI	GTAC	3 cut(s)	238, 706, 748
AfiI	CCNNNNNNNGG	1 cut(s)	910
AflIII	ACRYGT	1 cut(s)	386
AgsI	TTSAA	6 cut(s)	413, 524, 579, 618, 863, 898
AloI	GAACNNNNNNTCC	2 cut(s)	754, 786
AluBI	AGCT	4 cut(s)	129, 399, 650, 826
AluI	AGCT	4 cut(s)	129, 399, 650, 826
Alw21I	GWGCWC	1 cut(s)	464
AlwI	GGATC	1 cut(s)	786
Ama87I	CYCGRG	1 cut(s)	82
AoxI	GGCC	4 cut(s)	7, 86, 424, 453
ApeKI	GCWGC	7 cut(s)	113, 558, 680, 683, 686, 689, 692
ApoI	RAATTY	2 cut(s)	518, 603
AspLEI	GCGC	4 cut(s)	72, 81, 140, 484
AsuHPI	GGTGA	2 cut(s)	233, 809
AvaI	CYCGRG	1 cut(s)	82
BalI	TGGCCA	1 cut(s)	426
BbsI	GAAGAC	1 cut(s)	886
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	7 cut(s)	100, 570, 692, 695, 698, 701, 704
BceAI	ACGGC	1 cut(s)	118
BclI	TGATCA	4 cut(s)	34, 51, 57, 808
BfaI	CTAG	3 cut(s)	126, 332, 729
BfmI	CTRYAG	1 cut(s)	755
BfoI	RGCGCY	3 cut(s)	82, 141, 485
BglII	AGATCT	2 cut(s)	225, 315
BisI	GCNGC	8 cut(s)	114, 559, 681, 684, 687, 690, 693, 720
BlsI	GCNGC	8 cut(s)	115, 560, 682, 685, 688, 691, 694, 721
BmcAI	AGTACT	2 cut(s)	238, 706
BmeT110I	CYCGRG	1 cut(s)	82
BmsI	GCATC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	886
BpuEI	CTTGAG	1 cut(s)	267
BsaBI	GATNNNNATC	3 cut(s)	56, 807, 813
BsaHI	GRCGYC	2 cut(s)	105, 122
BsaJI	CCNNGG	2 cut(s)	83, 450
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	1 cut(s)	910
Bse1I	ACTGG	2 cut(s)	342, 780
Bse8I	GATNNNNATC	3 cut(s)	56, 807, 813
BseDI	CCNNGG	2 cut(s)	83, 450
BseGI	GGATG	1 cut(s)	41
BseJI	GATNNNNATC	3 cut(s)	56, 807, 813
BseLI	CCNNNNNNNGG	1 cut(s)	910
BseMII	CTCAG	2 cut(s)	231, 621
BseNI	ACTGG	2 cut(s)	342, 780
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	7 cut(s)	100, 570, 692, 695, 698, 701, 704
BseYI	CCCAGC	1 cut(s)	499
BsgI	GTGCAG	1 cut(s)	777
BshFI	GGCC	4 cut(s)	9, 88, 426, 455
BsiHKAI	GWGCWC	1 cut(s)	464
BsiHKCI	CYCGRG	1 cut(s)	82
BslFI	GGGAC	2 cut(s)	79, 133
BslI	CCNNNNNNNGG	1 cut(s)	910
BsmFI	GGGAC	2 cut(s)	79, 133
BsnI	GGCC	4 cut(s)	9, 88, 426, 455
BsoBI	CYCGRG	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	464
BspACI	CCGC	2 cut(s)	116, 719
BspANI	GGCC	4 cut(s)	9, 88, 426, 455
BspCNI	CTCAG	2 cut(s)	232, 622
BspHI	TCATGA	3 cut(s)	54, 172, 607
BspMAI	CTGCAG	1 cut(s)	759
BspPI	GGATC	1 cut(s)	786
BsrI	ACTGG	2 cut(s)	342, 780
BssECI	CCNNGG	2 cut(s)	83, 450
BssNI	GRCGYC	2 cut(s)	105, 122
BssT1I	CCWWGG	1 cut(s)	450
Bst4CI	ACNGT	4 cut(s)	301, 704, 766, 848
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	2 cut(s)	105, 122
BstC8I	GCNNGC	6 cut(s)	68, 480, 486, 536, 596, 648
BstDEI	CTNAG	3 cut(s)	240, 630, 855
BstF5I	GGATG	1 cut(s)	41
BstH2I	RGCGCY	3 cut(s)	82, 141, 485
BstHHI	GCGC	4 cut(s)	72, 81, 140, 484
BstMWI	GCNNNNNNNGC	8 cut(s)	76, 78, 85, 135, 686, 689, 692, 738
BstNSI	RCATGY	1 cut(s)	390
BstSFI	CTRYAG	1 cut(s)	755
BstV1I	GCAGC	7 cut(s)	100, 570, 692, 695, 698, 701, 704
BstV2I	GAAGAC	1 cut(s)	886
BstX2I	RGATCY	3 cut(s)	225, 315, 778
BstXI	CCANNNNNNTGG	1 cut(s)	349
BstYI	RGATCY	3 cut(s)	225, 315, 778
BsuRI	GGCC	4 cut(s)	9, 88, 426, 455
BtgZI	GCGATG	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	41
BtsI	GCAGTG	1 cut(s)	37
BtsIMutI	CAGTG	2 cut(s)	37, 773
Cac8I	GCNNGC	6 cut(s)	68, 480, 486, 536, 596, 648
CciI	TCATGA	3 cut(s)	54, 172, 607
CfoI	GCGC	4 cut(s)	72, 81, 140, 484
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	3 cut(s)	237, 705, 747
CviQI	GTAC	3 cut(s)	237, 705, 747
DdeI	CTNAG	3 cut(s)	240, 630, 855
DraIII	CACNNNGTG	1 cut(s)	422
EaeI	YGGCCR	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco130I	CCWWGG	1 cut(s)	450
Eco147I	AGGCCT	1 cut(s)	88
Eco88I	CYCGRG	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	450
FalI	AAGNNNNNCTT	4 cut(s)	302, 334, 388, 420
FaqI	GGGAC	2 cut(s)	79, 133
FauI	CCCGC	1 cut(s)	109
FbaI	TGATCA	4 cut(s)	34, 51, 57, 808
Fnu4HI	GCNGC	8 cut(s)	114, 559, 681, 684, 687, 690, 693, 720
FokI	GGATG	1 cut(s)	28
Fsp4HI	GCNGC	8 cut(s)	114, 559, 681, 684, 687, 690, 693, 720
FspBI	CTAG	3 cut(s)	126, 332, 729
GlaI	GCGC	4 cut(s)	71, 80, 139, 483
GluI	GCNGC	8 cut(s)	114, 559, 681, 684, 687, 690, 693, 720
GsaI	CCCAGC	1 cut(s)	503
HaeII	RGCGCY	3 cut(s)	82, 141, 485
HaeIII	GGCC	4 cut(s)	9, 88, 426, 455
HgaI	GACGC	1 cut(s)	94
HhaI	GCGC	4 cut(s)	72, 81, 140, 484
Hin1I	GRCGYC	2 cut(s)	105, 122
Hin6I	GCGC	4 cut(s)	70, 79, 138, 482
HinP1I	GCGC	4 cut(s)	70, 79, 138, 482
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	397
HinfI	GANTC	1 cut(s)	851
HpaI	GTTAAC	1 cut(s)	304
HphI	GGTGA	2 cut(s)	233, 809
Hpy166II	GTNNAC	4 cut(s)	201, 304, 636, 659
Hpy188I	TCNGA	1 cut(s)	631
Hpy188III	TCNNGA	3 cut(s)	55, 173, 608
Hpy8I	GTNNAC	4 cut(s)	201, 304, 636, 659
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	414, 663, 797
HpyCH4III	ACNGT	4 cut(s)	301, 704, 766, 848
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	4 cut(s)	381, 572, 757, 794
HpyF10VI	GCNNNNNNNGC	8 cut(s)	76, 78, 85, 135, 686, 689, 692, 738
HpyF3I	CTNAG	3 cut(s)	240, 630, 855
HpySE526I	ACGT	1 cut(s)	122
Hsp92I	GRCGYC	2 cut(s)	105, 122
HspAI	GCGC	4 cut(s)	70, 79, 138, 482
Ksp22I	TGATCA	4 cut(s)	34, 51, 57, 808
KspAI	GTTAAC	1 cut(s)	304
Lsp1109I	GCAGC	7 cut(s)	100, 570, 692, 695, 698, 701, 704
LweI	GCATC	1 cut(s)	50
MaeI	CTAG	3 cut(s)	126, 332, 729
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	5 cut(s)	295, 344, 389, 437, 848
MboII	GAAGA	7 cut(s)	26, 257, 260, 536, 761, 812, 886
MflI	RGATCY	3 cut(s)	225, 315, 778
MhlI	GDGCHC	1 cut(s)	464
MlsI	TGGCCA	1 cut(s)	426
MluNI	TGGCCA	1 cut(s)	426
MlyI	GAGTC	1 cut(s)	845
MnlI	CCTC	9 cut(s)	78, 99, 158, 235, 244, 460, 508, 514, 576
Mox20I	TGGCCA	1 cut(s)	426
MscI	TGGCCA	1 cut(s)	426
MseI	TTAA	2 cut(s)	303, 928
Msp20I	TGGCCA	1 cut(s)	426
MwoI	GCNNNNNNNGC	8 cut(s)	76, 78, 85, 135, 686, 689, 692, 738
NmuCI	GTSAC	3 cut(s)	295, 437, 848
NspI	RCATGY	1 cut(s)	390
PagI	TCATGA	3 cut(s)	54, 172, 607
PceI	AGGCCT	1 cut(s)	88
PciI	ACATGT	1 cut(s)	386
PkrI	GCNGC	8 cut(s)	115, 560, 682, 685, 688, 691, 694, 721
PleI	GAGTC	1 cut(s)	845
PpsI	GAGTC	1 cut(s)	845
PscI	ACATGT	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	499
PstI	CTGCAG	1 cut(s)	759
PsuI	RGATCY	3 cut(s)	225, 315, 778
RsaI	GTAC	3 cut(s)	238, 706, 748
RsaNI	GTAC	3 cut(s)	237, 705, 747
SaqAI	TTAA	2 cut(s)	303, 928
SatI	GCNGC	8 cut(s)	114, 559, 681, 684, 687, 690, 693, 720
ScaI	AGTACT	2 cut(s)	238, 706
SchI	GAGTC	1 cut(s)	845
SduI	GDGCHC	1 cut(s)	464
SetI	ASST	7 cut(s)	125, 131, 401, 568, 652, 789, 828
SfaNI	GCATC	1 cut(s)	50
SfcI	CTRYAG	1 cut(s)	755
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	2 cut(s)	116, 719
SspI	AATATT	1 cut(s)	736
SspMI	CTAG	3 cut(s)	126, 332, 729
StuI	AGGCCT	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	4 cut(s)	301, 704, 766, 848
TaiI	ACGT	1 cut(s)	125
TatI	WGTACW	2 cut(s)	236, 704
TauI	GCSGC	1 cut(s)	722
Tru1I	TTAA	2 cut(s)	303, 928
Tru9I	TTAA	2 cut(s)	303, 928
TscAI	CASTG	2 cut(s)	37, 780
TseFI	GTSAC	3 cut(s)	295, 437, 848
TseI	GCWGC	7 cut(s)	113, 558, 680, 683, 686, 689, 692
Tsp45I	GTSAC	3 cut(s)	295, 437, 848
TspDTI	ATGAA	4 cut(s)	396, 532, 596, 818
TspRI	CASTG	2 cut(s)	37, 780
XapI	RAATTY	2 cut(s)	518, 603
XceI	RCATGY	1 cut(s)	390
XspI	CTAG	3 cut(s)	126, 332, 729
ZraI	GACGTC	1 cut(s)	123
ZrmI	AGTACT	2 cut(s)	238, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.