Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015889

Physical Location & Seq

Genomic Coordinates Reverse (-)

23885441 .. 23886418

Gene Structure 978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGAAGGGCAAGAAGAGGTGCAGGCTGTGTTGAGTGATCATCAGCAAAGCCAGATGATGATCATCAAGGGCAAGAGGACCAAGCGCCAGAGGCCCATGTCTCCTTTCGGTCTGGCAGTCACTTCCAGCTCGTCGAGCGCTTGCGGCGGCGGACACGGCGGAGAAGAGTATGGGAACTCGTTCACTTCAGCTAGTTACGAGAGCACTGAGGAGGAAGAGGACATGGCCAACTGCCTGATTCTGTTGGCTCAGGGATGCGATGTGGTTCCTAAGCAACAGACTAGTCCCGTTCATGAAGCCACAGGTGTTTCTGGTCATGTGAGCAAAGCTGGGTTTTATGTCTACGAGTGCAAGACCTGCAACCGGACCTTCCCTTCTTTCCAAGCACTCGGCGGCCACCGAGCCAGTCACAAGAAGCCAAAGTCTGTTGCGGCGGCGATGGCTGATCAGGAGAAGAAACCGGCACCGATTCATTTCACCACCTCTGCATCCATGGATCAAGAAGTTGAAGACTCTAAGCAATTTGTTAAGAAGAGTAGCCCTCCTCCTCCTCCTCCTCCTCCTCCTTCAACTCAGCCTGCAGTTCCTATTCAGATAAAGGGGTTTCAGAGCAACAACAAGGCTAAGATTCATGAGTGTTCGATATGCGGGTCGGAGTTCTCATCGGGTCAAGCTCTTGGTGGGCATATGAGACGGCACAGAGCGATAGTGGCCAACAACAACACTACTACTCAGGTGGTGGGGATTGGTGCAGCCATTGATAATAACAGTACGAGGAGCAAGCAGGAGAGAAGTAATATTCTAGCACTGGATCTAAACCTTCCAGCACCAGAAGACCATGATCATCATCATCATCATCACCACCATCACCAACAGCATCAGATTCATCACCAGCGTGACTCGAAGTTCCAATTTGTGCCGACCCAACAGACTAGTCTTGTCTTCAACGCCCCTGCTTTGGTGGATTGTCATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

326

Amino Acids

35.48

Weight (kDa)

7.11

Isoelectric Point (pI)

70.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	114 - 140	6.2e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	211 - 235	1.8e-11	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28200
fragaria_vesca	FvH4_3g30610
malus_domestica	MD03G1128800.v1.1
prunus_persica	Prupe.6G113100_v2.0.a1
pyrus_communis	pycom11g12160
rosa_chinensis	RchiOBHm_Chr5g0056681
rosa_laevigata	RLG00000035120
rosa_multiflora	Rmu_sc0005086.1_g000004
rosa_roxburghii	Rroxscaffold_1G00023670
rosa_rugosa	Rorug05G0301300
rosa_samantha	Rh5AG371600 Rh5BG383500 Rh5CG406600 Rh5DG396500
rosa_wichuraiana	Rw5G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	8 cut(s)	144, 147, 150, 159, 393, 431, 434, 648
AclWI	GGATC	2 cut(s)	504, 819
AcoI	YGGCCR	3 cut(s)	225, 394, 711
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	772
AfeI	AGCGCT	1 cut(s)	139
AfiI	CCNNNNNNNGG	2 cut(s)	363, 958
AgsI	TTSAA	3 cut(s)	509, 570, 946
AhlI	ACTAGT	2 cut(s)	281, 932
AleI	CACNNNNGTG	1 cut(s)	894
AluBI	AGCT	4 cut(s)	129, 191, 329, 674
AluI	AGCT	4 cut(s)	129, 191, 329, 674
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	2 cut(s)	105, 685
AlwI	GGATC	2 cut(s)	504, 819
Aor51HI	AGCGCT	1 cut(s)	139
AoxI	GGCC	4 cut(s)	92, 225, 394, 711
ApeKI	GCWGC	1 cut(s)	752
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	2 cut(s)	87, 140
AspS9I	GGNCC	3 cut(s)	78, 93, 366
AsuHPI	GGTGA	4 cut(s)	469, 851, 860, 881
AvaII	GGWCC	2 cut(s)	78, 366
BalI	TGGCCA	2 cut(s)	227, 713
BanI	GGYRCC	1 cut(s)	463
BbsI	GAAGAC	3 cut(s)	516, 840, 934
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	764
BccI	CCATC	2 cut(s)	433, 873
BceAI	ACGGC	2 cut(s)	172, 710
BclI	TGATCA	4 cut(s)	37, 60, 445, 841
BcoDI	GTCTC	2 cut(s)	105, 685
BcuI	ACTAGT	2 cut(s)	281, 932
BfaI	CTAG	4 cut(s)	192, 282, 803, 933
BfmI	CTRYAG	1 cut(s)	579
BfoI	RGCGCY	2 cut(s)	88, 141
BfuAI	ACCTGC	1 cut(s)	365
BisI	GCNGC	6 cut(s)	145, 148, 394, 432, 435, 753
BlsI	GCNGC	6 cut(s)	146, 149, 395, 433, 436, 754
Bme18I	GGWCC	2 cut(s)	78, 366
BmgT120I	GGNCC	3 cut(s)	78, 93, 366
BmiI	GGNNCC	2 cut(s)	267, 465
BmsI	GCATC	3 cut(s)	245, 497, 886
BpiI	GAAGAC	3 cut(s)	516, 840, 934
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
Bpu10I	CCTNAGC	2 cut(s)	249, 270
BsaBI	GATNNNNATC	3 cut(s)	59, 62, 846
BsaJI	CCNNGG	1 cut(s)	492
BsaWI	WCCGGW	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	2 cut(s)	363, 958
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	2 cut(s)	405, 813
Bse8I	GATNNNNATC	3 cut(s)	59, 62, 846
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	2 cut(s)	260, 488
BseJI	GATNNNNATC	3 cut(s)	59, 62, 846
BseLI	CCNNNNNNNGG	2 cut(s)	363, 958
BseMII	CTCAG	4 cut(s)	198, 263, 587, 746
BseNI	ACTGG	2 cut(s)	405, 813
BseRI	GAGGAG	9 cut(s)	224, 534, 537, 540, 543, 546, 549, 552, 790
BseXI	GCAGC	1 cut(s)	764
BseYI	CCCAGC	1 cut(s)	329
BsgI	GTGCAG	2 cut(s)	41, 771
BshFI	GGCC	4 cut(s)	94, 227, 396, 713
BshNI	GGYRCC	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	206
BsiSI	CCGG	2 cut(s)	364, 461
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	2 cut(s)	363, 958
BsmAI	GTCTC	2 cut(s)	105, 685
BsmBI	CGTCTC	1 cut(s)	685
BsmFI	GGGAC	1 cut(s)	270
BsnI	GGCC	4 cut(s)	94, 227, 396, 713
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	6 cut(s)	37, 60, 445, 496, 811, 841
Bsp19I	CCATGG	1 cut(s)	492
BspACI	CCGC	8 cut(s)	144, 147, 150, 159, 393, 431, 434, 648
BspANI	GGCC	4 cut(s)	94, 227, 396, 713
BspCNI	CTCAG	4 cut(s)	199, 262, 586, 745
BspHI	TCATGA	2 cut(s)	292, 631
BspLI	GGNNCC	2 cut(s)	267, 465
BspMAI	CTGCAG	1 cut(s)	583
BspMI	ACCTGC	1 cut(s)	365
BspPI	GGATC	2 cut(s)	504, 819
BspT107I	GGYRCC	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	405, 813
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	6 cut(s)	37, 60, 445, 496, 811, 841
BssT1I	CCWWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	770
Bst6I	CTCTTC	4 cut(s)	9, 159, 210, 527
BstAPI	GCANNNNNTGC	1 cut(s)	357
BstC8I	GCNNGC	4 cut(s)	24, 142, 579, 782
BstDEI	CTNAG	7 cut(s)	207, 249, 270, 516, 573, 624, 732
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	2 cut(s)	260, 488
BstH2I	RGCGCY	2 cut(s)	88, 141
BstHHI	GCGC	2 cut(s)	87, 140
BstKTI	GATC	6 cut(s)	40, 63, 448, 499, 814, 844
BstMAI	GTCTC	2 cut(s)	105, 685
BstMBI	GATC	6 cut(s)	37, 60, 445, 496, 811, 841
BstMWI	GCNNNNNNNGC	7 cut(s)	91, 135, 144, 156, 357, 440, 710
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	1 cut(s)	764
BstV2I	GAAGAC	3 cut(s)	516, 840, 934
BstX2I	RGATCY	1 cut(s)	811
BstYI	RGATCY	1 cut(s)	811
BsuRI	GGCC	4 cut(s)	94, 227, 396, 713
BtgI	CCRYGG	1 cut(s)	492
BtgZI	GCGATG	2 cut(s)	273, 452
BtsCI	GGATG	2 cut(s)	260, 488
BtsIMutI	CAGTG	2 cut(s)	204, 806
BveI	ACCTGC	1 cut(s)	365
Cac8I	GCNNGC	4 cut(s)	24, 142, 579, 782
CciI	TCATGA	2 cut(s)	292, 631
CfoI	GCGC	2 cut(s)	87, 140
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	3 cut(s)	78, 93, 366
Csp6I	GTAC	1 cut(s)	771
CviAII	CATG	7 cut(s)	97, 223, 293, 317, 493, 632, 839
CviQI	GTAC	1 cut(s)	771
DdeI	CTNAG	7 cut(s)	207, 249, 270, 516, 573, 624, 732
DpnI	GATC	6 cut(s)	39, 62, 447, 498, 813, 843
DpnII	GATC	6 cut(s)	37, 60, 445, 496, 811, 841
EaeI	YGGCCR	3 cut(s)	225, 394, 711
Eam1104I	CTCTTC	4 cut(s)	9, 159, 210, 527
EarI	CTCTTC	4 cut(s)	9, 159, 210, 527
EciI	GGCGGA	2 cut(s)	165, 174
Eco130I	CCWWGG	1 cut(s)	492
Eco47I	GGWCC	2 cut(s)	78, 366
Eco47III	AGCGCT	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	492
ErhI	CCWWGG	1 cut(s)	492
Esp3I	CGTCTC	1 cut(s)	685
FaeI	CATG	7 cut(s)	100, 226, 296, 320, 496, 635, 842
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	7 cut(s)	96, 222, 292, 316, 492, 631, 838
FauI	CCCGC	1 cut(s)	641
FauNDI	CATATG	1 cut(s)	687
FbaI	TGATCA	4 cut(s)	37, 60, 445, 841
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	6 cut(s)	145, 148, 394, 432, 435, 753
FokI	GGATG	2 cut(s)	267, 475
Fsp4HI	GCNGC	6 cut(s)	145, 148, 394, 432, 435, 753
FspBI	CTAG	4 cut(s)	192, 282, 803, 933
GlaI	GCGC	2 cut(s)	86, 139
GluI	GCNGC	6 cut(s)	145, 148, 394, 432, 435, 753
GsaI	CCCAGC	1 cut(s)	333
HaeII	RGCGCY	2 cut(s)	88, 141
HaeIII	GGCC	4 cut(s)	94, 227, 396, 713
HapII	CCGG	2 cut(s)	364, 461
HhaI	GCGC	2 cut(s)	87, 140
Hin1II	CATG	7 cut(s)	100, 226, 296, 320, 496, 635, 842
Hin6I	GCGC	2 cut(s)	85, 138
HinP1I	GCGC	2 cut(s)	85, 138
HinfI	GANTC	6 cut(s)	238, 469, 512, 628, 883, 899
HpaII	CCGG	2 cut(s)	364, 461
HphI	GGTGA	4 cut(s)	469, 851, 860, 881
Hpy166II	GTNNAC	2 cut(s)	183, 343
Hpy188I	TCNGA	4 cut(s)	594, 609, 655, 882
Hpy188III	TCNNGA	4 cut(s)	293, 449, 500, 632
Hpy8I	GTNNAC	2 cut(s)	183, 343
Hpy99I	CGWCG	1 cut(s)	136
HpyAV	CCTTC	4 cut(s)	379, 384, 576, 830
HpyCH4III	ACNGT	1 cut(s)	770
HpyCH4V	TGCA	6 cut(s)	22, 351, 360, 488, 581, 752
HpyF10VI	GCNNNNNNNGC	7 cut(s)	91, 135, 144, 156, 357, 440, 710
HpyF3I	CTNAG	7 cut(s)	207, 249, 270, 516, 573, 624, 732
Hsp92II	CATG	7 cut(s)	100, 226, 296, 320, 496, 635, 842
HspAI	GCGC	2 cut(s)	85, 138
Ksp22I	TGATCA	4 cut(s)	37, 60, 445, 841
Kzo9I	GATC	6 cut(s)	37, 60, 445, 496, 811, 841
LmnI	GCTCC	1 cut(s)	777
Lsp1109I	GCAGC	1 cut(s)	764
LweI	GCATC	3 cut(s)	245, 497, 886
MaeI	CTAG	4 cut(s)	192, 282, 803, 933
MaeIII	GTNAC	4 cut(s)	118, 194, 407, 896
MalI	GATC	6 cut(s)	39, 62, 447, 498, 813, 843
MboI	GATC	6 cut(s)	37, 60, 445, 496, 811, 841
MboII	GAAGA	8 cut(s)	26, 176, 227, 466, 521, 544, 845, 934
MflI	RGATCY	1 cut(s)	811
MhlI	GDGCHC	1 cut(s)	206
MlsI	TGGCCA	2 cut(s)	227, 713
MluCI	AATT	2 cut(s)	521, 911
MluNI	TGGCCA	2 cut(s)	227, 713
MlyI	GAGTC	2 cut(s)	506, 893
MmeI	TCCRAC	1 cut(s)	633
Mox20I	TGGCCA	2 cut(s)	227, 713
MroXI	GAANNNNTTC	1 cut(s)	179
MscI	TGGCCA	2 cut(s)	227, 713
MseI	TTAA	2 cut(s)	528, 976
MslI	CAYNNNNRTG	1 cut(s)	894
Msp20I	TGGCCA	2 cut(s)	227, 713
MspI	CCGG	2 cut(s)	364, 461
MwoI	GCNNNNNNNGC	7 cut(s)	91, 135, 144, 156, 357, 440, 710
NcoI	CCATGG	1 cut(s)	492
NdeI	CATATG	1 cut(s)	687
NdeII	GATC	6 cut(s)	37, 60, 445, 496, 811, 841
NlaIII	CATG	7 cut(s)	100, 226, 296, 320, 496, 635, 842
NlaIV	GGNNCC	2 cut(s)	267, 465
NmeAIII	GCCGAG	1 cut(s)	369
NmuCI	GTSAC	3 cut(s)	118, 407, 896
OliI	CACNNNNGTG	1 cut(s)	894
PagI	TCATGA	2 cut(s)	292, 631
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	4 cut(s)	238, 469, 628, 883
PkrI	GCNGC	6 cut(s)	146, 149, 395, 433, 436, 754
PleI	GAGTC	2 cut(s)	506, 893
PpsI	GAGTC	2 cut(s)	506, 893
PspFI	CCCAGC	1 cut(s)	329
PspN4I	GGNNCC	2 cut(s)	267, 465
PspPI	GGNCC	3 cut(s)	78, 93, 366
PstI	CTGCAG	1 cut(s)	583
PsuI	RGATCY	1 cut(s)	811
RsaI	GTAC	1 cut(s)	772
RsaNI	GTAC	1 cut(s)	771
RseI	CAYNNNNRTG	1 cut(s)	894
SaqAI	TTAA	2 cut(s)	528, 976
SatI	GCNGC	6 cut(s)	145, 148, 394, 432, 435, 753
Sau3AI	GATC	6 cut(s)	37, 60, 445, 496, 811, 841
Sau96I	GGNCC	3 cut(s)	78, 93, 366
SchI	GAGTC	2 cut(s)	506, 893
SduI	GDGCHC	1 cut(s)	206
SfaNI	GCATC	3 cut(s)	245, 497, 886
SfcI	CTRYAG	1 cut(s)	579
SinI	GGWCC	2 cut(s)	78, 366
SmiMI	CAYNNNNRTG	1 cut(s)	894
SpeI	ACTAGT	2 cut(s)	281, 932
Sse9I	AATT	2 cut(s)	521, 911
SsiI	CCGC	8 cut(s)	144, 147, 150, 159, 393, 431, 434, 648
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	4 cut(s)	192, 282, 803, 933
StyI	CCWWGG	1 cut(s)	492
TaaI	ACNGT	1 cut(s)	770
TaqI	TCGA	3 cut(s)	134, 641, 902
TaqII	GACCGA	1 cut(s)	98
TasI	AATT	2 cut(s)	521, 911
TauI	GCSGC	5 cut(s)	147, 150, 396, 434, 437
TfiI	GAWTC	4 cut(s)	238, 469, 628, 883
Tru1I	TTAA	2 cut(s)	528, 976
Tru9I	TTAA	2 cut(s)	528, 976
TscAI	CASTG	2 cut(s)	211, 813
TseFI	GTSAC	3 cut(s)	118, 407, 896
TseI	GCWGC	1 cut(s)	752
Tsp45I	GTSAC	3 cut(s)	118, 407, 896
TspDTI	ATGAA	5 cut(s)	281, 309, 461, 620, 875
TspRI	CASTG	2 cut(s)	211, 813
VpaK11BI	GGWCC	2 cut(s)	78, 366
XmiI	GTMKAC	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	4 cut(s)	192, 282, 803, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.