Rh5CG406600

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015889
Physical Location & Seq
Reverse (-)
54481498 .. 54482800
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG406600.1

Sequence Viewer

Length: 945 bp
ATGGAAGGGCAAGAAGAGCTGGTTTTGAGTGATCATCAGCAAACCCAGATGATCATCAAGGGCAAGAGGACCAAGCGCCAGAGGCCCATGTCTCCTTTCGGTCTGGCAGTGACTTCGAGCTCGTCGAGCGCTTGTGGCGGCGCTCATGGTGGAGAAGAGTATGGGAACTCCTTCACTTCAGCCAGTTATGACAGCACTGAGGAGGAAGAGGACATGGCCAACTGCCTGATTCTGTTGGCTCAGGGTTGCCATGTGATTCCCAAGCAAGAGACTAGCAGTACTCTTCATGAAGCTACCGCTGTTTCTAGTCATGTGGGCAAAGCTGGGTTTTATGTCTATGAGTGCAAGACCTGCAACCGGACCTTCCCTTCTTTTCAAGCACTCGGTGGCCACCGAGCCAGTCACAAAAAGCCAAAGTCCTCCACCGCGGCGATGGCCGATCAGGAGAAGAAACCGGCATCGACCCATTTCACCTCTGCATCCATGGATCAAGAAGTTGAAGATTCTAAGCAATTTATCAAGAAGAGTAGTCCTCCTCCAACCCATCCTACAGTTCCTATTCAGATAAAGGGGTTTCAGAGCAACAACAACAAGGCTAAGATTCATGAGTGTTCGATATGCGGGTCGGAGTTCACATCGGGTCAAGCTCTTGGTGGGCATATGAGACGGCACAGAGCAGCAGTAGCCAACAACAACACTACTACTAGTACTACTCAGGTGGTGGGTATTGGTGCAGCCATTGATAACAGTATGAGGAGCAAGCAGGAGAGAACTATTCTAGCACTGGATCTAAATCTTCCAGCACCAGAAGACCATGATCATCACCACCACCATCACCAACAGCATCAGATTCATCACCAGCGTGACTCGAAGTTCCAATTTGTGCCGACCCAACAGACTAGTCTTGTCTTCAACGCTCCTGCTTTGGTGGATTGTCATTATTAA

Protein Analysis

314

Amino Acids

34.39

Weight (kDa)

7.1

Isoelectric Point (pI)

59.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 112 - 138 5.9e-13 C2H2-type zinc finger
zf-C2H2_6 PF13912 202 - 226 5.3e-11 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015889)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28200
fragaria_vesca FvH4_3g30610
malus_domestica MD03G1128800.v1.1
prunus_persica Prupe.6G113100_v2.0.a1
pyrus_communis pycom11g12160
rosa_chinensis RchiOBHm_Chr5g0056681
rosa_laevigata RLG00000035120
rosa_multiflora Rmu_sc0005086.1_g000004
rosa_roxburghii Rroxscaffold_1G00023670
rosa_rugosa Rorug05G0301300
rosa_samantha Rh5AG371600 Rh5BG383500 Rh5CG406600 Rh5DG396500
rosa_wichuraiana Rw5G034860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 359
AccII CGCG 1 cut(s) 428
AciI CCGC 5 cut(s) 138, 297, 426, 428, 621
AclWI GGATC 2 cut(s) 495, 795
AcoI YGGCCR 3 cut(s) 216, 388, 435
AcuI CTGAAG 1 cut(s) 162
AdeI CACNNNGTG 1 cut(s) 386
AfaI GTAC 2 cut(s) 280, 709
AfeI AGCGCT 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 357
AgsI TTSAA 3 cut(s) 377, 500, 913
AhlI ACTAGT 2 cut(s) 704, 899
AleI CACNNNNGTG 1 cut(s) 861
AluBI AGCT 5 cut(s) 19, 120, 293, 323, 647
AluI AGCT 5 cut(s) 19, 120, 293, 323, 647
Alw21I GWGCWC 1 cut(s) 122
Alw26I GTCTC 3 cut(s) 96, 263, 658
AlwI GGATC 2 cut(s) 495, 795
Aor51HI AGCGCT 1 cut(s) 130
AoxI GGCC 4 cut(s) 83, 216, 388, 435
ApeKI GCWGC 2 cut(s) 677, 734
Asp700I GAANNNNTTC 1 cut(s) 170
AspLEI GCGC 3 cut(s) 78, 131, 143
AspS9I GGNCC 3 cut(s) 69, 84, 360
AsuHPI GGTGA 4 cut(s) 463, 815, 827, 848
AvaII GGWCC 2 cut(s) 69, 360
BalI TGGCCA 2 cut(s) 218, 390
BanII GRGCYC 1 cut(s) 122
BbsI GAAGAC 2 cut(s) 816, 901
Bbv12I GWGCWC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 689, 746
BccI CCATC 3 cut(s) 427, 552, 840
BceAI ACGGC 1 cut(s) 683
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BclI TGATCA 3 cut(s) 31, 51, 817
BcoDI GTCTC 3 cut(s) 96, 263, 658
BcuI ACTAGT 2 cut(s) 704, 899
BfaI CTAG 5 cut(s) 273, 306, 705, 779, 900
BfmI CTRYAG 1 cut(s) 549
BfoI RGCGCY 3 cut(s) 79, 132, 144
BfuAI ACCTGC 1 cut(s) 359
BisI GCNGC 4 cut(s) 139, 429, 678, 735
BlsI GCNGC 4 cut(s) 140, 430, 679, 736
BmcAI AGTACT 2 cut(s) 280, 709
Bme18I GGWCC 2 cut(s) 69, 360
BmgT120I GGNCC 3 cut(s) 69, 84, 360
BmsI GCATC 3 cut(s) 467, 488, 853
BpiI GAAGAC 2 cut(s) 816, 901
BplI GAGNNNNNCTC 2 cut(s) 517, 549
Bpu10I CCTNAGC 1 cut(s) 240
BsaBI GATNNNNATC 2 cut(s) 53, 792
BsaJI CCNNGG 2 cut(s) 426, 483
BsaWI WCCGGW 1 cut(s) 357
Bsc4I CCNNNNNNNGG 1 cut(s) 357
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 3 cut(s) 183, 399, 789
Bse8I GATNNNNATC 2 cut(s) 53, 792
BseDI CCNNGG 2 cut(s) 426, 483
BseGI GGATG 2 cut(s) 479, 544
BseJI GATNNNNATC 2 cut(s) 53, 792
BseLI CCNNNNNNNGG 1 cut(s) 357
BseMII CTCAG 3 cut(s) 189, 254, 728
BseNI ACTGG 3 cut(s) 183, 399, 789
BseRI GAGGAG 3 cut(s) 215, 525, 769
BseXI GCAGC 2 cut(s) 689, 746
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 753
Bsh1236I CGCG 1 cut(s) 428
BshFI GGCC 4 cut(s) 85, 218, 390, 437
BsiHKAI GWGCWC 1 cut(s) 122
BsiSI CCGG 2 cut(s) 358, 455
BslI CCNNNNNNNGG 1 cut(s) 357
BsmAI GTCTC 3 cut(s) 96, 263, 658
BsmBI CGTCTC 1 cut(s) 658
BsnI GGCC 4 cut(s) 85, 218, 390, 437
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 6 cut(s) 31, 51, 439, 487, 787, 817
Bsp19I CCATGG 1 cut(s) 483
BspACI CCGC 5 cut(s) 138, 297, 426, 428, 621
BspANI GGCC 4 cut(s) 85, 218, 390, 437
BspCNI CTCAG 3 cut(s) 190, 253, 727
BspFNI CGCG 1 cut(s) 428
BspHI TCATGA 2 cut(s) 286, 604
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 2 cut(s) 495, 795
BspQI GCTCTTC 1 cut(s) 9
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 3 cut(s) 183, 399, 789
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 2 cut(s) 426, 483
BssMI GATC 6 cut(s) 31, 51, 439, 487, 787, 817
BssT1I CCWWGG 1 cut(s) 483
Bst4CI ACNGT 2 cut(s) 553, 749
Bst6I CTCTTC 5 cut(s) 9, 150, 201, 288, 518
BstAPI GCANNNNNTGC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 761
BstDEI CTNAG 5 cut(s) 198, 240, 507, 597, 714
BstDSI CCRYGG 2 cut(s) 426, 483
BstF5I GGATG 2 cut(s) 479, 544
BstFNI CGCG 1 cut(s) 428
BstH2I RGCGCY 3 cut(s) 79, 132, 144
BstHHI GCGC 3 cut(s) 78, 131, 143
BstKTI GATC 6 cut(s) 34, 54, 442, 490, 790, 820
BstMAI GTCTC 3 cut(s) 96, 263, 658
BstMBI GATC 6 cut(s) 31, 51, 439, 487, 787, 817
BstMWI GCNNNNNNNGC 7 cut(s) 16, 82, 126, 135, 351, 434, 683
BstSFI CTRYAG 1 cut(s) 549
BstUI CGCG 1 cut(s) 428
BstV1I GCAGC 2 cut(s) 689, 746
BstV2I GAAGAC 2 cut(s) 816, 901
BstX2I RGATCY 1 cut(s) 787
BstYI RGATCY 1 cut(s) 787
BsuRI GGCC 4 cut(s) 85, 218, 390, 437
BtgI CCRYGG 2 cut(s) 426, 483
BtgZI GCGATG 1 cut(s) 446
BtsCI GGATG 2 cut(s) 479, 544
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 3 cut(s) 114, 195, 782
BveI ACCTGC 1 cut(s) 359
Cac8I GCNNGC 1 cut(s) 761
CciI TCATGA 2 cut(s) 286, 604
CfoI GCGC 3 cut(s) 78, 131, 143
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 3 cut(s) 69, 84, 360
Cfr42I CCGCGG 1 cut(s) 429
Csp6I GTAC 2 cut(s) 279, 708
CviAII CATG 9 cut(s) 88, 146, 214, 251, 287, 311, 484, 605, 815
CviQI GTAC 2 cut(s) 279, 708
DdeI CTNAG 5 cut(s) 198, 240, 507, 597, 714
DpnI GATC 6 cut(s) 33, 53, 441, 489, 789, 819
DpnII GATC 6 cut(s) 31, 51, 439, 487, 787, 817
DraIII CACNNNGTG 1 cut(s) 386
EaeI YGGCCR 3 cut(s) 216, 388, 435
Eam1104I CTCTTC 5 cut(s) 9, 150, 201, 288, 518
EarI CTCTTC 5 cut(s) 9, 150, 201, 288, 518
Ecl136II GAGCTC 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 483
Eco24I GRGCYC 1 cut(s) 122
Eco47I GGWCC 2 cut(s) 69, 360
Eco47III AGCGCT 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 162
EcoICRI GAGCTC 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 483
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 483
Esp3I CGTCTC 1 cut(s) 658
FaeI CATG 9 cut(s) 91, 149, 217, 254, 290, 314, 487, 608, 818
FatI CATG 9 cut(s) 87, 145, 213, 250, 286, 310, 483, 604, 814
FauI CCCGC 1 cut(s) 614
FauNDI CATATG 1 cut(s) 660
FbaI TGATCA 3 cut(s) 31, 51, 817
Fnu4HI GCNGC 4 cut(s) 139, 429, 678, 735
FokI GGATG 2 cut(s) 466, 531
FriOI GRGCYC 1 cut(s) 122
Fsp4HI GCNGC 4 cut(s) 139, 429, 678, 735
FspBI CTAG 5 cut(s) 273, 306, 705, 779, 900
GlaI GCGC 3 cut(s) 77, 130, 142
GluI GCNGC 4 cut(s) 139, 429, 678, 735
GsaI CCCAGC 1 cut(s) 327
HaeII RGCGCY 3 cut(s) 79, 132, 144
HaeIII GGCC 4 cut(s) 85, 218, 390, 437
HapII CCGG 2 cut(s) 358, 455
HhaI GCGC 3 cut(s) 78, 131, 143
Hin1II CATG 9 cut(s) 91, 149, 217, 254, 290, 314, 487, 608, 818
Hin6I GCGC 3 cut(s) 76, 129, 141
HinP1I GCGC 3 cut(s) 76, 129, 141
HinfI GANTC 6 cut(s) 229, 256, 503, 601, 850, 866
HpaII CCGG 2 cut(s) 358, 455
HphI GGTGA 4 cut(s) 463, 815, 827, 848
Hpy166II GTNNAC 1 cut(s) 633
Hpy188I TCNGA 4 cut(s) 564, 579, 628, 849
Hpy188III TCNNGA 5 cut(s) 287, 443, 491, 520, 605
Hpy8I GTNNAC 1 cut(s) 633
Hpy99I CGWCG 1 cut(s) 127
HpyAV CCTTC 3 cut(s) 181, 373, 378
HpyCH4III ACNGT 2 cut(s) 553, 749
HpyCH4V TGCA 4 cut(s) 345, 354, 479, 734
HpyF10VI GCNNNNNNNGC 7 cut(s) 16, 82, 126, 135, 351, 434, 683
HpyF3I CTNAG 5 cut(s) 198, 240, 507, 597, 714
Hsp92II CATG 9 cut(s) 91, 149, 217, 254, 290, 314, 487, 608, 818
HspAI GCGC 3 cut(s) 76, 129, 141
Ksp22I TGATCA 3 cut(s) 31, 51, 817
KspI CCGCGG 1 cut(s) 429
Kzo9I GATC 6 cut(s) 31, 51, 439, 487, 787, 817
LguI GCTCTTC 1 cut(s) 9
LmnI GCTCC 2 cut(s) 756, 922
Lsp1109I GCAGC 2 cut(s) 689, 746
LweI GCATC 3 cut(s) 467, 488, 853
MaeI CTAG 5 cut(s) 273, 306, 705, 779, 900
MaeIII GTNAC 3 cut(s) 109, 401, 863
MalI GATC 6 cut(s) 33, 53, 441, 489, 789, 819
MboI GATC 6 cut(s) 31, 51, 439, 487, 787, 817
MflI RGATCY 1 cut(s) 787
MhlI GDGCHC 1 cut(s) 122
MlsI TGGCCA 2 cut(s) 218, 390
MluCI AATT 2 cut(s) 512, 878
MluNI TGGCCA 2 cut(s) 218, 390
MlyI GAGTC 1 cut(s) 860
MmeI TCCRAC 2 cut(s) 563, 606
Mox20I TGGCCA 2 cut(s) 218, 390
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 2 cut(s) 218, 390
MseI TTAA 1 cut(s) 943
MslI CAYNNNNRTG 1 cut(s) 861
Msp20I TGGCCA 2 cut(s) 218, 390
MspA1I CMGCKG 2 cut(s) 299, 428
MspI CCGG 2 cut(s) 358, 455
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 7 cut(s) 16, 82, 126, 135, 351, 434, 683
NcoI CCATGG 1 cut(s) 483
NdeI CATATG 1 cut(s) 660
NdeII GATC 6 cut(s) 31, 51, 439, 487, 787, 817
NlaIII CATG 9 cut(s) 91, 149, 217, 254, 290, 314, 487, 608, 818
NmuCI GTSAC 3 cut(s) 109, 401, 863
OliI CACNNNNGTG 1 cut(s) 861
PagI TCATGA 2 cut(s) 286, 604
PciSI GCTCTTC 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 122
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 5 cut(s) 229, 256, 503, 601, 850
PkrI GCNGC 4 cut(s) 140, 430, 679, 736
PleI GAGTC 1 cut(s) 860
PpsI GAGTC 1 cut(s) 860
Psp124BI GAGCTC 1 cut(s) 122
PspFI CCCAGC 1 cut(s) 323
PspPI GGNCC 3 cut(s) 69, 84, 360
PsuI RGATCY 1 cut(s) 787
RsaI GTAC 2 cut(s) 280, 709
RsaNI GTAC 2 cut(s) 279, 708
RseI CAYNNNNRTG 1 cut(s) 861
SacI GAGCTC 1 cut(s) 122
SacII CCGCGG 1 cut(s) 429
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 943
SatI GCNGC 4 cut(s) 139, 429, 678, 735
Sau3AI GATC 6 cut(s) 31, 51, 439, 487, 787, 817
Sau96I GGNCC 3 cut(s) 69, 84, 360
ScaI AGTACT 2 cut(s) 280, 709
SchI GAGTC 1 cut(s) 860
SduI GDGCHC 1 cut(s) 122
SetI ASST 9 cut(s) 21, 122, 295, 325, 353, 365, 476, 649, 720
SfaNI GCATC 3 cut(s) 467, 488, 853
SfcI CTRYAG 1 cut(s) 549
Sfr303I CCGCGG 1 cut(s) 429
SgrBI CCGCGG 1 cut(s) 429
SinI GGWCC 2 cut(s) 69, 360
SmiMI CAYNNNNRTG 1 cut(s) 861
SpeI ACTAGT 2 cut(s) 704, 899
Sse9I AATT 2 cut(s) 512, 878
SsiI CCGC 5 cut(s) 138, 297, 426, 428, 621
SspMI CTAG 5 cut(s) 273, 306, 705, 779, 900
SstI GAGCTC 1 cut(s) 122
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 2 cut(s) 553, 749
TaqI TCGA 5 cut(s) 116, 125, 461, 614, 869
TaqII GACCGA 1 cut(s) 89
TasI AATT 2 cut(s) 512, 878
TatI WGTACW 2 cut(s) 278, 707
TauI GCSGC 2 cut(s) 141, 431
TfiI GAWTC 5 cut(s) 229, 256, 503, 601, 850
Tru1I TTAA 1 cut(s) 943
Tru9I TTAA 1 cut(s) 943
TscAI CASTG 3 cut(s) 114, 202, 789
TseFI GTSAC 3 cut(s) 109, 401, 863
TseI GCWGC 2 cut(s) 677, 734
Tsp45I GTSAC 3 cut(s) 109, 401, 863
TspDTI ATGAA 4 cut(s) 275, 303, 593, 842
TspRI CASTG 3 cut(s) 114, 202, 789
VpaK11BI GGWCC 2 cut(s) 69, 360
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 5 cut(s) 273, 306, 705, 779, 900
ZrmI AGTACT 2 cut(s) 280, 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.