Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0015889

Physical Location & Seq

Genomic Coordinates Reverse (-)

12502836 .. 12503846

Gene Structure 1011 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1128800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAAGGCCAAGAAGAACTAGTCGTGACCAATGATCAAGCGTCACAGATGATCATGATCAAGGGCAAGCGTACCAAGCGACAGAGGCCTCAGTCCCCAAACGGGTTGGTCACCGCGGCAGTCACCTCTAGCTCATCCAGCGCCTGTGGCGCTGGTACTATTGGAGGAGGAGATCACGATTACAATTATTATGGAAATTCATTCACATCTCCCACAACTTCTGGTGAGATTTATGAGAGCACGGAAGAAGAAGAGGACATGGCAAATTGCCTAATCCTCTTGGCTCAGGGTTATCATGTTAATCCAAAGCAGACCATTGAAGAAAGATTAGCACAAAATACTAACATGGGCAAGGCTGGTTTTTTTGTCTATGAGTGCAAAACATGCAACAGAACTTTCCCTTCATTTCAAGCACTGGGTGGCCACAGAGCAAGTCACAAGAAACCGAAGTCCATGAGTAGCACGGAGGAGATGATAAAAAAATCACCACCAGCGGCGGCTCCACCAACCCACCATTTCATCACAGCCACAACTTTTGAGGAATTTGAAGATCAAAGCAAGCAGTTAATCAAATATAAGAGCAGCCCACCTCCTGCAATTCCAATCCAAGTAGGTAATAAGCCTAAGATTCATGAGTGTTCGATCTGCCGGTCTGAGTTCACATCTGGTCAAGCACTTGGGGGCCACATGAGAAGGCACAGAACAGCATCTGCAGCAACCAATAGTAACACTATTAGTGGTAGTGCTACTGCTACACATGTGGCTGTGAATAATAGTAGCAATAATATGATTGGCTCAAGTACCAAACTGCAGAGAAATGTTCTCCCACTGGATCTAAACCTTCCTGCACCAGAAGATCATGATCATCACCACCATCACCATCATCGTGAGTCTAAGTTTCAGTTTGTGCCTACCCAACAAACTACCCTTGTCTTCAACGCCCCTGCTTTGGTGGATTGTCATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

323

Amino Acids

35.27

Weight (kDa)

7.32

Isoelectric Point (pI)

62.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	123 - 149	6.1e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	211 - 235	1e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28200
fragaria_vesca	FvH4_3g30610
malus_domestica	MD03G1128800.v1.1
prunus_persica	Prupe.6G113100_v2.0.a1
pyrus_communis	pycom11g12160
rosa_chinensis	RchiOBHm_Chr5g0056681
rosa_laevigata	RLG00000035120
rosa_multiflora	Rmu_sc0005086.1_g000004
rosa_roxburghii	Rroxscaffold_1G00023670
rosa_rugosa	Rorug05G0301300
rosa_samantha	Rh5AG371600 Rh5BG383500 Rh5CG406600 Rh5DG396500
rosa_wichuraiana	Rw5G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	116
AciI	CCGC	4 cut(s)	114, 116, 494, 497
AclWI	GGATC	1 cut(s)	840
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	2 cut(s)	196, 542
AdeI	CACNNNGTG	1 cut(s)	419
AfaI	GTAC	3 cut(s)	73, 157, 802
AfiI	CCNNNNNNNGG	2 cut(s)	102, 949
AflIII	ACRYGT	1 cut(s)	757
AgsI	TTSAA	4 cut(s)	320, 410, 548, 937
AhlI	ACTAGT	1 cut(s)	19
AluBI	AGCT	1 cut(s)	132
AluI	AGCT	1 cut(s)	132
Alw21I	GWGCWC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	840
AlwNI	CAGNNNCTG	2 cut(s)	144, 710
AoxI	GGCC	4 cut(s)	7, 86, 421, 682
ApeKI	GCWGC	2 cut(s)	582, 713
ApoI	RAATTY	2 cut(s)	196, 542
AspLEI	GCGC	2 cut(s)	143, 152
AspS9I	GGNCC	1 cut(s)	682
AsuHPI	GGTGA	6 cut(s)	103, 115, 236, 477, 860, 869
BalI	TGGCCA	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	925
Bbv12I	GWGCWC	1 cut(s)	242
BbvI	GCAGC	2 cut(s)	594, 725
BccI	CCATC	2 cut(s)	882, 888
BclI	TGATCA	4 cut(s)	34, 51, 57, 862
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	2 cut(s)	20, 129
BfmI	CTRYAG	2 cut(s)	711, 809
BfoI	RGCGCY	2 cut(s)	144, 153
BisI	GCNGC	5 cut(s)	117, 495, 498, 583, 714
BlsI	GCNGC	5 cut(s)	118, 496, 499, 584, 715
BmgT120I	GGNCC	1 cut(s)	682
BmiI	GGNNCC	2 cut(s)	501, 683
BmrI	ACTGGG	1 cut(s)	425
BmsI	GCATC	1 cut(s)	716
BmuI	ACTGGG	1 cut(s)	425
BpiI	GAAGAC	1 cut(s)	925
Bpu10I	CCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	781
BsaBI	GATNNNNATC	2 cut(s)	56, 861
BsaJI	CCNNGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 949
Bse118I	RCCGGY	1 cut(s)	648
Bse1I	ACTGG	2 cut(s)	420, 834
Bse8I	GATNNNNATC	2 cut(s)	56, 861
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	134
BseJI	GATNNNNATC	2 cut(s)	56, 861
BseLI	CCNNNNNNNGG	2 cut(s)	102, 949
BseMII	CTCAG	3 cut(s)	104, 299, 645
BseNI	ACTGG	2 cut(s)	420, 834
BseRI	GAGGAG	3 cut(s)	180, 183, 482
BseXI	GCAGC	2 cut(s)	594, 725
BsgI	GTGCAG	1 cut(s)	831
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	4 cut(s)	9, 88, 423, 684
BsiHKAI	GWGCWC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	649
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	102, 949
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	4 cut(s)	9, 88, 423, 684
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	9 cut(s)	34, 51, 57, 172, 550, 642, 832, 856, 862
BspACI	CCGC	4 cut(s)	114, 116, 494, 497
BspANI	GGCC	4 cut(s)	9, 88, 423, 684
BspCNI	CTCAG	3 cut(s)	103, 298, 646
BspFNI	CGCG	1 cut(s)	116
BspHI	TCATGA	3 cut(s)	54, 631, 859
BspLI	GGNNCC	2 cut(s)	501, 683
BspMAI	CTGCAG	2 cut(s)	715, 813
BspPI	GGATC	1 cut(s)	840
BsrFI	RCCGGY	1 cut(s)	648
BsrI	ACTGG	2 cut(s)	420, 834
BssAI	RCCGGY	1 cut(s)	648
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	9 cut(s)	34, 51, 57, 172, 550, 642, 832, 856, 862
Bst6I	CTCTTC	1 cut(s)	246
BstAPI	GCANNNNNTGC	1 cut(s)	384
BstC8I	GCNNGC	2 cut(s)	68, 560
BstDEI	CTNAG	5 cut(s)	90, 285, 624, 654, 894
BstDSI	CCRYGG	1 cut(s)	114
BstEII	GGTNACC	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	134
BstFNI	CGCG	1 cut(s)	116
BstH2I	RGCGCY	2 cut(s)	144, 153
BstHHI	GCGC	2 cut(s)	143, 152
BstKTI	GATC	9 cut(s)	37, 54, 60, 175, 553, 645, 835, 859, 865
BstMBI	GATC	9 cut(s)	34, 51, 57, 172, 550, 642, 832, 856, 862
BstMWI	GCNNNNNNNGC	7 cut(s)	76, 85, 138, 147, 149, 384, 713
BstNSI	RCATGY	2 cut(s)	387, 761
BstPI	GGTNACC	1 cut(s)	109
BstSFI	CTRYAG	2 cut(s)	711, 809
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	594, 725
BstV2I	GAAGAC	1 cut(s)	925
BstX2I	RGATCY	1 cut(s)	832
BstYI	RGATCY	1 cut(s)	832
BsuRI	GGCC	4 cut(s)	9, 88, 423, 684
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	134
BtsIMutI	CAGTG	2 cut(s)	413, 827
Cac8I	GCNNGC	2 cut(s)	68, 560
CaiI	CAGNNNCTG	2 cut(s)	144, 710
CciI	TCATGA	3 cut(s)	54, 631, 859
CfoI	GCGC	2 cut(s)	143, 152
Cfr10I	RCCGGY	1 cut(s)	648
Cfr13I	GGNCC	1 cut(s)	682
Cfr42I	CCGCGG	1 cut(s)	117
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	3 cut(s)	72, 156, 801
CspCI	CAANNNNNGTGG	2 cut(s)	517, 552
CviQI	GTAC	3 cut(s)	72, 156, 801
DdeI	CTNAG	5 cut(s)	90, 285, 624, 654, 894
DpnI	GATC	9 cut(s)	36, 53, 59, 174, 552, 644, 834, 858, 864
DpnII	GATC	9 cut(s)	34, 51, 57, 172, 550, 642, 832, 856, 862
DraIII	CACNNNGTG	1 cut(s)	419
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco147I	AGGCCT	1 cut(s)	88
Eco91I	GGTNACC	1 cut(s)	109
EcoO65I	GGTNACC	1 cut(s)	109
FaqI	GGGAC	1 cut(s)	79
FbaI	TGATCA	4 cut(s)	34, 51, 57, 862
Fnu4HI	GCNGC	5 cut(s)	117, 495, 498, 583, 714
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	5 cut(s)	117, 495, 498, 583, 714
FspBI	CTAG	2 cut(s)	20, 129
GlaI	GCGC	2 cut(s)	142, 151
GluI	GCNGC	5 cut(s)	117, 495, 498, 583, 714
HaeII	RGCGCY	2 cut(s)	144, 153
HaeIII	GGCC	4 cut(s)	9, 88, 423, 684
HapII	CCGG	1 cut(s)	649
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	2 cut(s)	143, 152
Hin6I	GCGC	2 cut(s)	141, 150
HinP1I	GCGC	2 cut(s)	141, 150
HinfI	GANTC	2 cut(s)	628, 890
HpaII	CCGG	1 cut(s)	649
HphI	GGTGA	6 cut(s)	103, 115, 236, 477, 860, 869
Hpy166II	GTNNAC	1 cut(s)	660
Hpy188I	TCNGA	1 cut(s)	655
Hpy188III	TCNNGA	6 cut(s)	25, 55, 176, 632, 860, 887
Hpy8I	GTNNAC	1 cut(s)	660
HpyAV	CCTTC	3 cut(s)	411, 687, 851
HpyCH4V	TGCA	6 cut(s)	378, 387, 596, 713, 811, 848
HpyF10VI	GCNNNNNNNGC	7 cut(s)	76, 85, 138, 147, 149, 384, 713
HpyF3I	CTNAG	5 cut(s)	90, 285, 624, 654, 894
HspAI	GCGC	2 cut(s)	141, 150
Ksp22I	TGATCA	4 cut(s)	34, 51, 57, 862
KspI	CCGCGG	1 cut(s)	117
Kzo9I	GATC	9 cut(s)	34, 51, 57, 172, 550, 642, 832, 856, 862
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	2 cut(s)	594, 725
LweI	GCATC	1 cut(s)	716
MaeI	CTAG	2 cut(s)	20, 129
MaeIII	GTNAC	6 cut(s)	25, 42, 109, 121, 434, 725
MalI	GATC	9 cut(s)	36, 53, 59, 174, 552, 644, 834, 858, 864
MboI	GATC	9 cut(s)	34, 51, 57, 172, 550, 642, 832, 856, 862
MboII	GAAGA	8 cut(s)	26, 257, 260, 263, 332, 560, 866, 925
MflI	RGATCY	1 cut(s)	832
MhlI	GDGCHC	1 cut(s)	242
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	5 cut(s)	184, 196, 265, 542, 597
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	899
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	3 cut(s)	300, 566, 967
MslI	CAYNNNNRTG	1 cut(s)	885
Msp20I	TGGCCA	1 cut(s)	423
MspA1I	CMGCKG	2 cut(s)	116, 494
MspI	CCGG	1 cut(s)	649
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	7 cut(s)	76, 85, 138, 147, 149, 384, 713
NdeII	GATC	9 cut(s)	34, 51, 57, 172, 550, 642, 832, 856, 862
NlaIV	GGNNCC	2 cut(s)	501, 683
NmuCI	GTSAC	5 cut(s)	25, 42, 109, 121, 434
NspI	RCATGY	2 cut(s)	387, 761
PagI	TCATGA	3 cut(s)	54, 631, 859
PceI	AGGCCT	1 cut(s)	88
PciI	ACATGT	1 cut(s)	757
PfeI	GAWTC	1 cut(s)	628
PkrI	GCNGC	5 cut(s)	118, 496, 499, 584, 715
PleI	GAGTC	1 cut(s)	898
PpsI	GAGTC	1 cut(s)	898
PscI	ACATGT	1 cut(s)	757
PspEI	GGTNACC	1 cut(s)	109
PspN4I	GGNNCC	2 cut(s)	501, 683
PspPI	GGNCC	1 cut(s)	682
PstI	CTGCAG	2 cut(s)	715, 813
PstNI	CAGNNNCTG	2 cut(s)	144, 710
PsuI	RGATCY	1 cut(s)	832
RsaI	GTAC	3 cut(s)	73, 157, 802
RsaNI	GTAC	3 cut(s)	72, 156, 801
RseI	CAYNNNNRTG	1 cut(s)	885
SacII	CCGCGG	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	300, 566, 967
SatI	GCNGC	5 cut(s)	117, 495, 498, 583, 714
Sau3AI	GATC	9 cut(s)	34, 51, 57, 172, 550, 642, 832, 856, 862
Sau96I	GGNCC	1 cut(s)	682
SchI	GAGTC	1 cut(s)	899
SduI	GDGCHC	1 cut(s)	242
SetI	ASST	5 cut(s)	128, 134, 592, 616, 843
SfaNI	GCATC	1 cut(s)	716
SfcI	CTRYAG	2 cut(s)	711, 809
Sfr303I	CCGCGG	1 cut(s)	117
SgrBI	CCGCGG	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	885
SmlI	CTYRAG	1 cut(s)	796
SmoI	CTYRAG	1 cut(s)	796
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	5 cut(s)	184, 196, 265, 542, 597
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	4 cut(s)	114, 116, 494, 497
SspMI	CTAG	2 cut(s)	20, 129
StuI	AGGCCT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	641
TasI	AATT	5 cut(s)	184, 196, 265, 542, 597
TauI	GCSGC	3 cut(s)	119, 497, 500
TfiI	GAWTC	1 cut(s)	628
Tru1I	TTAA	3 cut(s)	300, 566, 967
Tru9I	TTAA	3 cut(s)	300, 566, 967
TscAI	CASTG	2 cut(s)	420, 834
TseFI	GTSAC	5 cut(s)	25, 42, 109, 121, 434
TseI	GCWGC	2 cut(s)	582, 713
Tsp45I	GTSAC	5 cut(s)	25, 42, 109, 121, 434
TspDTI	ATGAA	4 cut(s)	189, 393, 508, 620
TspGWI	ACGGA	2 cut(s)	257, 479
TspRI	CASTG	2 cut(s)	420, 834
XapI	RAATTY	2 cut(s)	196, 542
XceI	RCATGY	2 cut(s)	387, 761
XspI	CTAG	2 cut(s)	20, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.