Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015889

Physical Location & Seq

Genomic Coordinates Reverse (-)

61207916 .. 61208860

Gene Structure 945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035120

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAAGGGCAAGAAGAGTTGGTTGTGAGTGATCATCAGCAAACCCAGATGATCATCAAGGGAAAAAGGACCAAGCGCCAGAGGCCCATGTCTCCTTTCGGTCTGGCAGTGACTTCGAGCTCGTCGAGCGCTTGTGGCGGCTCTCATGGTGGAGAAGAGTATGGGAACTCCTTCACTTCAGCCAGTTATGACAGCACTGAGGAGGAAGAGGACATGGCCAACTGCCTGATTCTGTTGGCTCAGGGTTGCCATGTGGTTCCCAAGCAAGAGACTAGCAGTACTCTTCATGAAGCTACCGCTGTTTCTAGTCATGTGGGCAAAGCTGGGTTTTATGTCTATGAGTGTAAGACCTGCAACCGGACCTTCCCTTCTTTTCAAGCACTCGGTGGCCACCGAGCCAGTCACAAAAAGCCAAAGTCCTCCACCTCGGCGATGGCCGATCAGGAGAAGAAACCGGCATCGACCCATTTCACCTCTGCATCCATGGATCAAGAAGTTGAAGATTCTAAGGAATTTATCAAGAAGAGTAGTCCTCCTCCAACCCATCCTACAGTTCCTATTCAGATAAAGGGGTTTCAGAGCAACAACAACAAGGCTAAGATTCATGAGTGTTCGATATGCGGGTCGGAGTTCACATCGGGTCAAGCTCTTGGTGGGCATATGAGACGGCACAGAGCAGCAGTAGCCAACAACAACACTACTACTAATACCACTCAGGTGGTGGGTATTGGTGCAGCCATTGATAACAGTATGAGGAGCAAGCAGGAGAGAAGTATTCTAGCACTGGATCTAAATCTTCCAGCACCAGAAGACCATGATCATCATCACCACCATCACCAACAGCATCAGATTCATCACCAGCGTGACTCGAAGTTCCAATTTGTGCCGACCCAACAGACTAGTCTTGTCTTCAACGCTCCTGCTTTGGTGGATTGTCATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

315

Amino Acids

34.41

Weight (kDa)

6.91

Isoelectric Point (pI)

61.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	112 - 138	5.9e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	202 - 226	5.3e-11	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28200
fragaria_vesca	FvH4_3g30610
malus_domestica	MD03G1128800.v1.1
prunus_persica	Prupe.6G113100_v2.0.a1
pyrus_communis	pycom11g12160
rosa_chinensis	RchiOBHm_Chr5g0056681
rosa_laevigata	RLG00000035120
rosa_multiflora	Rmu_sc0005086.1_g000004
rosa_roxburghii	Rroxscaffold_1G00023670
rosa_rugosa	Rorug05G0301300
rosa_samantha	Rh5AG371600 Rh5BG383500 Rh5CG406600 Rh5DG396500
rosa_wichuraiana	Rw5G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	359
AciI	CCGC	3 cut(s)	138, 297, 621
AclWI	GGATC	2 cut(s)	495, 795
AcoI	YGGCCR	3 cut(s)	216, 388, 435
AcsI	RAATTY	1 cut(s)	512
AcuI	CTGAAG	1 cut(s)	162
AdeI	CACNNNGTG	1 cut(s)	386
AfaI	GTAC	1 cut(s)	280
AfeI	AGCGCT	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgsI	TTSAA	3 cut(s)	377, 500, 913
AhlI	ACTAGT	1 cut(s)	899
AleI	CACNNNNGTG	2 cut(s)	716, 861
AluBI	AGCT	4 cut(s)	120, 293, 323, 647
AluI	AGCT	4 cut(s)	120, 293, 323, 647
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	3 cut(s)	96, 263, 658
AlwI	GGATC	2 cut(s)	495, 795
Aor51HI	AGCGCT	1 cut(s)	130
AoxI	GGCC	4 cut(s)	83, 216, 388, 435
ApeKI	GCWGC	2 cut(s)	677, 734
ApoI	RAATTY	1 cut(s)	512
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	2 cut(s)	78, 131
AspS9I	GGNCC	3 cut(s)	69, 84, 360
AsuHPI	GGTGA	4 cut(s)	463, 818, 827, 848
AvaII	GGWCC	2 cut(s)	69, 360
BalI	TGGCCA	2 cut(s)	218, 390
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	816, 901
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	689, 746
BccI	CCATC	3 cut(s)	427, 552, 840
BceAI	ACGGC	1 cut(s)	683
BcgI	CGANNNNNNTGC	2 cut(s)	96, 130
BclI	TGATCA	3 cut(s)	31, 51, 817
BcoDI	GTCTC	3 cut(s)	96, 263, 658
BcuI	ACTAGT	1 cut(s)	899
BfaI	CTAG	4 cut(s)	273, 306, 779, 900
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	2 cut(s)	79, 132
BfuAI	ACCTGC	1 cut(s)	359
BisI	GCNGC	3 cut(s)	139, 678, 735
BlsI	GCNGC	3 cut(s)	140, 679, 736
BmcAI	AGTACT	1 cut(s)	280
Bme18I	GGWCC	2 cut(s)	69, 360
BmgT120I	GGNCC	3 cut(s)	69, 84, 360
BmiI	GGNNCC	1 cut(s)	258
BmsI	GCATC	3 cut(s)	467, 488, 853
BpiI	GAAGAC	2 cut(s)	816, 901
BplI	GAGNNNNNCTC	2 cut(s)	517, 549
Bpu10I	CCTNAGC	1 cut(s)	240
BsaBI	GATNNNNATC	3 cut(s)	53, 792, 822
BsaJI	CCNNGG	2 cut(s)	426, 483
BsaWI	WCCGGW	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse118I	RCCGGY	1 cut(s)	454
Bse1I	ACTGG	3 cut(s)	183, 399, 789
Bse8I	GATNNNNATC	3 cut(s)	53, 792, 822
BseDI	CCNNGG	2 cut(s)	426, 483
BseGI	GGATG	2 cut(s)	479, 544
BseJI	GATNNNNATC	3 cut(s)	53, 792, 822
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMII	CTCAG	3 cut(s)	189, 254, 728
BseNI	ACTGG	3 cut(s)	183, 399, 789
BseRI	GAGGAG	3 cut(s)	215, 525, 769
BseXI	GCAGC	2 cut(s)	689, 746
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	753
BshFI	GGCC	4 cut(s)	85, 218, 390, 437
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	358, 455
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	3 cut(s)	96, 263, 658
BsmBI	CGTCTC	1 cut(s)	658
BsnI	GGCC	4 cut(s)	85, 218, 390, 437
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	3 cut(s)	138, 297, 621
BspANI	GGCC	4 cut(s)	85, 218, 390, 437
BspCNI	CTCAG	3 cut(s)	190, 253, 727
BspHI	TCATGA	2 cut(s)	286, 604
BspLI	GGNNCC	1 cut(s)	258
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	495, 795
BsrFI	RCCGGY	1 cut(s)	454
BsrI	ACTGG	3 cut(s)	183, 399, 789
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	426, 483
BssMI	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
BssT1I	CCWWGG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	553, 749
Bst6I	CTCTTC	5 cut(s)	9, 150, 201, 288, 518
BstC8I	GCNNGC	1 cut(s)	761
BstDEI	CTNAG	5 cut(s)	198, 240, 507, 597, 714
BstDSI	CCRYGG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	479, 544
BstH2I	RGCGCY	2 cut(s)	79, 132
BstHHI	GCGC	2 cut(s)	78, 131
BstKTI	GATC	6 cut(s)	34, 54, 442, 490, 790, 820
BstMAI	GTCTC	3 cut(s)	96, 263, 658
BstMBI	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 126, 135, 683
BstSFI	CTRYAG	1 cut(s)	549
BstV1I	GCAGC	2 cut(s)	689, 746
BstV2I	GAAGAC	2 cut(s)	816, 901
BstX2I	RGATCY	1 cut(s)	787
BstXI	CCANNNNNNTGG	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	787
BsuRI	GGCC	4 cut(s)	85, 218, 390, 437
BtgI	CCRYGG	1 cut(s)	483
BtgZI	GCGATG	1 cut(s)	446
BtsCI	GGATG	2 cut(s)	479, 544
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	3 cut(s)	114, 195, 782
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	761
CciI	TCATGA	2 cut(s)	286, 604
CfoI	GCGC	2 cut(s)	78, 131
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	3 cut(s)	69, 84, 360
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	9 cut(s)	88, 146, 214, 251, 287, 311, 484, 605, 815
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	5 cut(s)	198, 240, 507, 597, 714
DpnI	GATC	6 cut(s)	33, 53, 441, 489, 789, 819
DpnII	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
DraIII	CACNNNGTG	1 cut(s)	386
EaeI	YGGCCR	3 cut(s)	216, 388, 435
Eam1104I	CTCTTC	5 cut(s)	9, 150, 201, 288, 518
EarI	CTCTTC	5 cut(s)	9, 150, 201, 288, 518
Ecl136II	GAGCTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	2 cut(s)	69, 360
Eco47III	AGCGCT	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	658
FaeI	CATG	9 cut(s)	91, 149, 217, 254, 290, 314, 487, 608, 818
FatI	CATG	9 cut(s)	87, 145, 213, 250, 286, 310, 483, 604, 814
FauI	CCCGC	1 cut(s)	614
FauNDI	CATATG	1 cut(s)	660
FbaI	TGATCA	3 cut(s)	31, 51, 817
Fnu4HI	GCNGC	3 cut(s)	139, 678, 735
FokI	GGATG	2 cut(s)	466, 531
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	3 cut(s)	139, 678, 735
FspBI	CTAG	4 cut(s)	273, 306, 779, 900
GlaI	GCGC	2 cut(s)	77, 130
GluI	GCNGC	3 cut(s)	139, 678, 735
GsaI	CCCAGC	1 cut(s)	327
HaeII	RGCGCY	2 cut(s)	79, 132
HaeIII	GGCC	4 cut(s)	85, 218, 390, 437
HapII	CCGG	2 cut(s)	358, 455
HhaI	GCGC	2 cut(s)	78, 131
Hin1II	CATG	9 cut(s)	91, 149, 217, 254, 290, 314, 487, 608, 818
Hin6I	GCGC	2 cut(s)	76, 129
HinP1I	GCGC	2 cut(s)	76, 129
HinfI	GANTC	5 cut(s)	229, 503, 601, 850, 866
HpaII	CCGG	2 cut(s)	358, 455
HphI	GGTGA	4 cut(s)	463, 818, 827, 848
Hpy166II	GTNNAC	1 cut(s)	633
Hpy188I	TCNGA	4 cut(s)	564, 579, 628, 849
Hpy188III	TCNNGA	5 cut(s)	287, 443, 491, 520, 605
Hpy8I	GTNNAC	1 cut(s)	633
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	3 cut(s)	181, 373, 378
HpyCH4III	ACNGT	2 cut(s)	553, 749
HpyCH4V	TGCA	3 cut(s)	354, 479, 734
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 126, 135, 683
HpyF3I	CTNAG	5 cut(s)	198, 240, 507, 597, 714
Hsp92II	CATG	9 cut(s)	91, 149, 217, 254, 290, 314, 487, 608, 818
HspAI	GCGC	2 cut(s)	76, 129
Ksp22I	TGATCA	3 cut(s)	31, 51, 817
Kzo9I	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
LmnI	GCTCC	2 cut(s)	756, 922
Lsp1109I	GCAGC	2 cut(s)	689, 746
LweI	GCATC	3 cut(s)	467, 488, 853
MaeI	CTAG	4 cut(s)	273, 306, 779, 900
MaeIII	GTNAC	3 cut(s)	109, 401, 863
MalI	GATC	6 cut(s)	33, 53, 441, 489, 789, 819
MboI	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	1 cut(s)	122
MlsI	TGGCCA	2 cut(s)	218, 390
MluCI	AATT	2 cut(s)	512, 878
MluNI	TGGCCA	2 cut(s)	218, 390
MlyI	GAGTC	1 cut(s)	860
MmeI	TCCRAC	2 cut(s)	563, 606
Mox20I	TGGCCA	2 cut(s)	218, 390
MroXI	GAANNNNTTC	1 cut(s)	170
MscI	TGGCCA	2 cut(s)	218, 390
MseI	TTAA	1 cut(s)	943
MslI	CAYNNNNRTG	2 cut(s)	716, 861
Msp20I	TGGCCA	2 cut(s)	218, 390
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	2 cut(s)	358, 455
MwoI	GCNNNNNNNGC	4 cut(s)	82, 126, 135, 683
NcoI	CCATGG	1 cut(s)	483
NdeI	CATATG	1 cut(s)	660
NdeII	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
NlaIII	CATG	9 cut(s)	91, 149, 217, 254, 290, 314, 487, 608, 818
NlaIV	GGNNCC	1 cut(s)	258
NmeAIII	GCCGAG	1 cut(s)	407
NmuCI	GTSAC	3 cut(s)	109, 401, 863
OliI	CACNNNNGTG	2 cut(s)	716, 861
PagI	TCATGA	2 cut(s)	286, 604
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	4 cut(s)	229, 503, 601, 850
PkrI	GCNGC	3 cut(s)	140, 679, 736
PleI	GAGTC	1 cut(s)	860
PpsI	GAGTC	1 cut(s)	860
Psp124BI	GAGCTC	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	3 cut(s)	69, 84, 360
PsuI	RGATCY	1 cut(s)	787
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	2 cut(s)	716, 861
SacI	GAGCTC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	943
SatI	GCNGC	3 cut(s)	139, 678, 735
Sau3AI	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
Sau96I	GGNCC	3 cut(s)	69, 84, 360
ScaI	AGTACT	1 cut(s)	280
SchI	GAGTC	1 cut(s)	860
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	9 cut(s)	122, 295, 325, 353, 365, 428, 476, 649, 720
SfaNI	GCATC	3 cut(s)	467, 488, 853
SfcI	CTRYAG	1 cut(s)	549
SinI	GGWCC	2 cut(s)	69, 360
SmiMI	CAYNNNNRTG	2 cut(s)	716, 861
SpeI	ACTAGT	1 cut(s)	899
Sse9I	AATT	2 cut(s)	512, 878
SsiI	CCGC	3 cut(s)	138, 297, 621
SspMI	CTAG	4 cut(s)	273, 306, 779, 900
SstI	GAGCTC	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	2 cut(s)	553, 749
TaqI	TCGA	5 cut(s)	116, 125, 461, 614, 869
TaqII	GACCGA	1 cut(s)	89
TasI	AATT	2 cut(s)	512, 878
TatI	WGTACW	1 cut(s)	278
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	4 cut(s)	229, 503, 601, 850
Tru1I	TTAA	1 cut(s)	943
Tru9I	TTAA	1 cut(s)	943
TscAI	CASTG	3 cut(s)	114, 202, 789
TseFI	GTSAC	3 cut(s)	109, 401, 863
TseI	GCWGC	2 cut(s)	677, 734
Tsp45I	GTSAC	3 cut(s)	109, 401, 863
TspDTI	ATGAA	4 cut(s)	275, 303, 593, 842
TspRI	CASTG	3 cut(s)	114, 202, 789
VpaK11BI	GGWCC	2 cut(s)	69, 360
XapI	RAATTY	1 cut(s)	512
XcmI	CCANNNNNNNNNTGG	2 cut(s)	430, 718
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	4 cut(s)	273, 306, 779, 900
ZrmI	AGTACT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.