Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005086.1

Orthogroup ID

OG0015889

Physical Location & Seq

Genomic Coordinates Reverse (-)

24538 .. 25482

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005086.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atggaagggcaagaagagctggttgtgagtgatcatcagcaaacccagatgatcatcaagggcaagaggaccaagcgccagaggcccatgtctcctttcggtctggcagtgacttcgagctcgtcgagcgcttgtggcggcgctcatggtggcgaagagtatgggaactccttcacttcagccagttatgacagcactgaggaggaagaggacatggccaactgcctgattctgttggctcagggttgccatgtggttcccaaacaagagactagcagtactcttcatgaagctaccgctgtttctagtcatgtgggcaaagctgggttttatgtctatgagtgcaagacctgcaaccggaccttcccttcttttcaagcactcggtggccaccgagccagtcacaaaaagccaaagtcctccaccgcggcgatggccgatcaggagaagaaaccggcatcgacccatttcacctctgcatccatggatcaagaagttgaagattctaagcaatttatcaagaagagtagtcctcctccaacccatcctacagttcctattcagataaaggggtttcagagcaacaacaacaaggctaagattcatgagtgttcgatatgtgggtcggagttcacatcgggtcaagctcttggtgggcatatgagacggcacagagcagcagtagccaacaacaacactactactggtactactcaggtggtgggtattggtgcagccattgataacagtatgaggagcaagcaggagagaagtattctagcactggatctaaatcttccagcaccagaagaccatgatcatcaccaccaccatcaccaacagcatcagattcatcaccagcgtgactcgaagttccaatttgtgccgacccaacagactagtcttgtcttcaacgctcctgctttggtggattgtcattattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

314

Amino Acids

34.32

Weight (kDa)

7.1

Isoelectric Point (pI)

61.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28200
fragaria_vesca	FvH4_3g30610
malus_domestica	MD03G1128800.v1.1
prunus_persica	Prupe.6G113100_v2.0.a1
pyrus_communis	pycom11g12160
rosa_chinensis	RchiOBHm_Chr5g0056681
rosa_laevigata	RLG00000035120
rosa_multiflora	Rmu_sc0005086.1_g000004
rosa_roxburghii	Rroxscaffold_1G00023670
rosa_rugosa	Rorug05G0301300
rosa_samantha	Rh5AG371600 Rh5BG383500 Rh5CG406600 Rh5DG396500
rosa_wichuraiana	Rw5G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	359
AccII	CGCG	1 cut(s)	428
AciI	CCGC	4 cut(s)	138, 297, 426, 428
AclWI	GGATC	2 cut(s)	495, 795
AcoI	YGGCCR	3 cut(s)	216, 388, 435
AcuI	CTGAAG	1 cut(s)	162
AdeI	CACNNNGTG	1 cut(s)	386
AfaI	GTAC	2 cut(s)	280, 709
AfeI	AGCGCT	1 cut(s)	130
AfiI	CCNNNNNNNGG	1 cut(s)	357
AgsI	TTSAA	3 cut(s)	377, 500, 913
AhlI	ACTAGT	1 cut(s)	899
AleI	CACNNNNGTG	1 cut(s)	861
AluBI	AGCT	5 cut(s)	19, 120, 293, 323, 647
AluI	AGCT	5 cut(s)	19, 120, 293, 323, 647
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	3 cut(s)	96, 263, 658
AlwI	GGATC	2 cut(s)	495, 795
Aor51HI	AGCGCT	1 cut(s)	130
AoxI	GGCC	4 cut(s)	83, 216, 388, 435
ApeKI	GCWGC	2 cut(s)	677, 734
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	3 cut(s)	78, 131, 143
AspS9I	GGNCC	3 cut(s)	69, 84, 360
AsuHPI	GGTGA	4 cut(s)	463, 815, 827, 848
AvaII	GGWCC	2 cut(s)	69, 360
BalI	TGGCCA	2 cut(s)	218, 390
BanII	GRGCYC	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	816, 901
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	689, 746
BccI	CCATC	3 cut(s)	427, 552, 840
BceAI	ACGGC	1 cut(s)	683
BcgI	CGANNNNNNTGC	2 cut(s)	96, 130
BclI	TGATCA	3 cut(s)	31, 51, 817
BcoDI	GTCTC	3 cut(s)	96, 263, 658
BcuI	ACTAGT	1 cut(s)	899
BfaI	CTAG	4 cut(s)	273, 306, 779, 900
BfmI	CTRYAG	1 cut(s)	549
BfoI	RGCGCY	3 cut(s)	79, 132, 144
BfuAI	ACCTGC	1 cut(s)	359
BisI	GCNGC	4 cut(s)	139, 429, 678, 735
BlsI	GCNGC	4 cut(s)	140, 430, 679, 736
BmcAI	AGTACT	1 cut(s)	280
Bme18I	GGWCC	2 cut(s)	69, 360
BmgT120I	GGNCC	3 cut(s)	69, 84, 360
BmiI	GGNNCC	1 cut(s)	258
BmsI	GCATC	3 cut(s)	467, 488, 853
BpiI	GAAGAC	2 cut(s)	816, 901
BplI	GAGNNNNNCTC	2 cut(s)	517, 549
Bpu10I	CCTNAGC	1 cut(s)	240
BsaBI	GATNNNNATC	2 cut(s)	53, 792
BsaJI	CCNNGG	2 cut(s)	426, 483
BsaWI	WCCGGW	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse118I	RCCGGY	1 cut(s)	454
Bse1I	ACTGG	4 cut(s)	183, 399, 709, 789
Bse8I	GATNNNNATC	2 cut(s)	53, 792
BseDI	CCNNGG	2 cut(s)	426, 483
BseGI	GGATG	2 cut(s)	479, 544
BseJI	GATNNNNATC	2 cut(s)	53, 792
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMII	CTCAG	3 cut(s)	189, 254, 728
BseNI	ACTGG	4 cut(s)	183, 399, 709, 789
BseRI	GAGGAG	3 cut(s)	215, 525, 769
BseXI	GCAGC	2 cut(s)	689, 746
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	753
Bsh1236I	CGCG	1 cut(s)	428
BshFI	GGCC	4 cut(s)	85, 218, 390, 437
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	2 cut(s)	358, 455
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	3 cut(s)	96, 263, 658
BsmBI	CGTCTC	1 cut(s)	658
BsnI	GGCC	4 cut(s)	85, 218, 390, 437
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
Bsp19I	CCATGG	1 cut(s)	483
BspACI	CCGC	4 cut(s)	138, 297, 426, 428
BspANI	GGCC	4 cut(s)	85, 218, 390, 437
BspCNI	CTCAG	3 cut(s)	190, 253, 727
BspFNI	CGCG	1 cut(s)	428
BspHI	TCATGA	2 cut(s)	286, 604
BspLI	GGNNCC	1 cut(s)	258
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	495, 795
BspQI	GCTCTTC	1 cut(s)	9
BsrFI	RCCGGY	1 cut(s)	454
BsrI	ACTGG	4 cut(s)	183, 399, 709, 789
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	426, 483
BssMI	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
BssT1I	CCWWGG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	553, 749
Bst6I	CTCTTC	5 cut(s)	9, 150, 201, 288, 518
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	761
BstDEI	CTNAG	5 cut(s)	198, 240, 507, 597, 714
BstDSI	CCRYGG	2 cut(s)	426, 483
BstF5I	GGATG	2 cut(s)	479, 544
BstFNI	CGCG	1 cut(s)	428
BstH2I	RGCGCY	3 cut(s)	79, 132, 144
BstHHI	GCGC	3 cut(s)	78, 131, 143
BstKTI	GATC	6 cut(s)	34, 54, 442, 490, 790, 820
BstMAI	GTCTC	3 cut(s)	96, 263, 658
BstMBI	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
BstMWI	GCNNNNNNNGC	7 cut(s)	16, 82, 126, 135, 351, 434, 683
BstSFI	CTRYAG	1 cut(s)	549
BstUI	CGCG	1 cut(s)	428
BstV1I	GCAGC	2 cut(s)	689, 746
BstV2I	GAAGAC	2 cut(s)	816, 901
BstX2I	RGATCY	1 cut(s)	787
BstYI	RGATCY	1 cut(s)	787
BsuRI	GGCC	4 cut(s)	85, 218, 390, 437
BtgI	CCRYGG	2 cut(s)	426, 483
BtgZI	GCGATG	1 cut(s)	446
BtsCI	GGATG	2 cut(s)	479, 544
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	3 cut(s)	114, 195, 782
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	761
CciI	TCATGA	2 cut(s)	286, 604
CfoI	GCGC	3 cut(s)	78, 131, 143
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	3 cut(s)	69, 84, 360
Cfr42I	CCGCGG	1 cut(s)	429
Csp6I	GTAC	2 cut(s)	279, 708
CviAII	CATG	9 cut(s)	88, 146, 214, 251, 287, 311, 484, 605, 815
CviQI	GTAC	2 cut(s)	279, 708
DdeI	CTNAG	5 cut(s)	198, 240, 507, 597, 714
DpnI	GATC	6 cut(s)	33, 53, 441, 489, 789, 819
DpnII	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
DraIII	CACNNNGTG	1 cut(s)	386
EaeI	YGGCCR	3 cut(s)	216, 388, 435
Eam1104I	CTCTTC	5 cut(s)	9, 150, 201, 288, 518
EarI	CTCTTC	5 cut(s)	9, 150, 201, 288, 518
Ecl136II	GAGCTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	483
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	2 cut(s)	69, 360
Eco47III	AGCGCT	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	162
EcoICRI	GAGCTC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	483
Esp3I	CGTCTC	1 cut(s)	658
FaeI	CATG	9 cut(s)	91, 149, 217, 254, 290, 314, 487, 608, 818
FatI	CATG	9 cut(s)	87, 145, 213, 250, 286, 310, 483, 604, 814
FauNDI	CATATG	1 cut(s)	660
FbaI	TGATCA	3 cut(s)	31, 51, 817
Fnu4HI	GCNGC	4 cut(s)	139, 429, 678, 735
FokI	GGATG	2 cut(s)	466, 531
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	4 cut(s)	139, 429, 678, 735
FspBI	CTAG	4 cut(s)	273, 306, 779, 900
GlaI	GCGC	3 cut(s)	77, 130, 142
GluI	GCNGC	4 cut(s)	139, 429, 678, 735
GsaI	CCCAGC	1 cut(s)	327
HaeII	RGCGCY	3 cut(s)	79, 132, 144
HaeIII	GGCC	4 cut(s)	85, 218, 390, 437
HapII	CCGG	2 cut(s)	358, 455
HhaI	GCGC	3 cut(s)	78, 131, 143
Hin1II	CATG	9 cut(s)	91, 149, 217, 254, 290, 314, 487, 608, 818
Hin6I	GCGC	3 cut(s)	76, 129, 141
HinP1I	GCGC	3 cut(s)	76, 129, 141
HinfI	GANTC	5 cut(s)	229, 503, 601, 850, 866
HpaII	CCGG	2 cut(s)	358, 455
HphI	GGTGA	4 cut(s)	463, 815, 827, 848
Hpy166II	GTNNAC	1 cut(s)	633
Hpy188I	TCNGA	4 cut(s)	564, 579, 628, 849
Hpy188III	TCNNGA	5 cut(s)	287, 443, 491, 520, 605
Hpy8I	GTNNAC	1 cut(s)	633
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	3 cut(s)	181, 373, 378
HpyCH4III	ACNGT	2 cut(s)	553, 749
HpyCH4V	TGCA	4 cut(s)	345, 354, 479, 734
HpyF10VI	GCNNNNNNNGC	7 cut(s)	16, 82, 126, 135, 351, 434, 683
HpyF3I	CTNAG	5 cut(s)	198, 240, 507, 597, 714
Hsp92II	CATG	9 cut(s)	91, 149, 217, 254, 290, 314, 487, 608, 818
HspAI	GCGC	3 cut(s)	76, 129, 141
Ksp22I	TGATCA	3 cut(s)	31, 51, 817
KspI	CCGCGG	1 cut(s)	429
Kzo9I	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
LguI	GCTCTTC	1 cut(s)	9
LmnI	GCTCC	2 cut(s)	756, 922
Lsp1109I	GCAGC	2 cut(s)	689, 746
LweI	GCATC	3 cut(s)	467, 488, 853
MaeI	CTAG	4 cut(s)	273, 306, 779, 900
MaeIII	GTNAC	3 cut(s)	109, 401, 863
MalI	GATC	6 cut(s)	33, 53, 441, 489, 789, 819
MboI	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
MflI	RGATCY	1 cut(s)	787
MhlI	GDGCHC	1 cut(s)	122
MlsI	TGGCCA	2 cut(s)	218, 390
MluCI	AATT	2 cut(s)	512, 878
MluNI	TGGCCA	2 cut(s)	218, 390
MlyI	GAGTC	1 cut(s)	860
MmeI	TCCRAC	2 cut(s)	563, 606
Mox20I	TGGCCA	2 cut(s)	218, 390
MroXI	GAANNNNTTC	1 cut(s)	170
MscI	TGGCCA	2 cut(s)	218, 390
MseI	TTAA	1 cut(s)	943
MslI	CAYNNNNRTG	1 cut(s)	861
Msp20I	TGGCCA	2 cut(s)	218, 390
MspA1I	CMGCKG	2 cut(s)	299, 428
MspI	CCGG	2 cut(s)	358, 455
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	7 cut(s)	16, 82, 126, 135, 351, 434, 683
NcoI	CCATGG	1 cut(s)	483
NdeI	CATATG	1 cut(s)	660
NdeII	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
NlaIII	CATG	9 cut(s)	91, 149, 217, 254, 290, 314, 487, 608, 818
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	3 cut(s)	109, 401, 863
OliI	CACNNNNGTG	1 cut(s)	861
PagI	TCATGA	2 cut(s)	286, 604
PciSI	GCTCTTC	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	4 cut(s)	229, 503, 601, 850
PkrI	GCNGC	4 cut(s)	140, 430, 679, 736
PleI	GAGTC	1 cut(s)	860
PpsI	GAGTC	1 cut(s)	860
Psp124BI	GAGCTC	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	258
PspPI	GGNCC	3 cut(s)	69, 84, 360
PsuI	RGATCY	1 cut(s)	787
RsaI	GTAC	2 cut(s)	280, 709
RsaNI	GTAC	2 cut(s)	279, 708
RseI	CAYNNNNRTG	1 cut(s)	861
SacI	GAGCTC	1 cut(s)	122
SacII	CCGCGG	1 cut(s)	429
SapI	GCTCTTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	943
SatI	GCNGC	4 cut(s)	139, 429, 678, 735
Sau3AI	GATC	6 cut(s)	31, 51, 439, 487, 787, 817
Sau96I	GGNCC	3 cut(s)	69, 84, 360
ScaI	AGTACT	1 cut(s)	280
SchI	GAGTC	1 cut(s)	860
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	9 cut(s)	21, 122, 295, 325, 353, 365, 476, 649, 720
SfaNI	GCATC	3 cut(s)	467, 488, 853
SfcI	CTRYAG	1 cut(s)	549
Sfr303I	CCGCGG	1 cut(s)	429
SgrBI	CCGCGG	1 cut(s)	429
SinI	GGWCC	2 cut(s)	69, 360
SmiMI	CAYNNNNRTG	1 cut(s)	861
SpeI	ACTAGT	1 cut(s)	899
Sse9I	AATT	2 cut(s)	512, 878
SsiI	CCGC	4 cut(s)	138, 297, 426, 428
SspMI	CTAG	4 cut(s)	273, 306, 779, 900
SstI	GAGCTC	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	483
TaaI	ACNGT	2 cut(s)	553, 749
TaqI	TCGA	5 cut(s)	116, 125, 461, 614, 869
TaqII	GACCGA	1 cut(s)	89
TasI	AATT	2 cut(s)	512, 878
TatI	WGTACW	1 cut(s)	278
TauI	GCSGC	2 cut(s)	141, 431
TfiI	GAWTC	4 cut(s)	229, 503, 601, 850
Tru1I	TTAA	1 cut(s)	943
Tru9I	TTAA	1 cut(s)	943
TscAI	CASTG	3 cut(s)	114, 202, 789
TseFI	GTSAC	3 cut(s)	109, 401, 863
TseI	GCWGC	2 cut(s)	677, 734
Tsp45I	GTSAC	3 cut(s)	109, 401, 863
TspDTI	ATGAA	4 cut(s)	275, 303, 593, 842
TspRI	CASTG	3 cut(s)	114, 202, 789
VpaK11BI	GGWCC	2 cut(s)	69, 360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	4 cut(s)	273, 306, 779, 900
ZrmI	AGTACT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.