AT2G28250

Receptor-like serine threonine-protein kinase NCRK

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
12042348 .. 12046616
4269 bp
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UTR
Exon/CDS
Intron
AT2G28250.3

Sequence Viewer

Length: 1698 bp
ATGAAGATGAGAGTGGAAACCGCACTTGCGATCCTTTTGGTTCTCATATCAATTCAACAATGTTATGGAGGTGTAAGCAACTATACATGTACGTGTTTCTCTTCGGGCAATCGAAGTGATATCCTGGAATCTAACTGTTCCACATCATGTAATTGCAGACCAGACAGAGATCAATGGGTATGTTTGTGTCCTGCAAATGGATTTCCGGTTATAGCCATTGGTGGTTCAAATTCGTCATGCTTCACTTCATGCAACTGCTCTGCTGGTGCTACAAAATCTTCAAAGAAGCAATATTTATCGAGGAAACTCGTTATAGTTATACTACTCTTCTGCGGTGTACTCATTTCACTAGCATTCCTTGCCTCTATGATTTGTTACATTTGTAGAAAGGACAAGTTTTCTGGACAAACCCCTTCAGTCTCTTCAGATAGAGAATCTAGCTGGCATAGCTCTGCTAACTTAATAAACCGTAAAAGCTCGGTTTCACAATCGAAAATTAGCATCAGCTCCTCAGTGGCAGGTTGCTTCTTTCAGAATGCTTCTTTGTTTTGTGTGAGCAAACCTGAAACAATCCATGGAGCTATCTTTCAGTTCTCATACACAGAATTAGAGCAAGCAACCAATAAATTCTCAAGTAACAGTGTAATAGGACATGGAGGAAGTAGTTGTGTTTACCGTGGACAGCTCAAAGACGGTAAAACCGCTGCGATCAAACGTCTAAATACCCCTAAAGGAGACGACACTGACACTCTATTCTCAACAGAGGTAGAGTTATTATCAAGACTCCATCATTACCATGTGGTACCGTTAATTGGATATTGTTCGGAGTTTCATGGCAAACATGCAGAGAGGCTTCTGGTTTTTGAGTACATGTCTTATGGAAGTCTAAGAGATTGCTTAGATGGAGAGTTAGGGGAGAAAATGACATGGAACATCCGAATCTCTGTCGCTCTTGGAGCTGCAAGAGGACTTGAGTATCTTCATGAAGCTGCCGCTCCAAGAATCTTACACCGAGATGTGAAATCCACAAATATTCTCCTTGATGAGAATTGGCATGCAAAAATAACAGATCTTGGGATGGCTAAGTGTTTGAGTAGCGATGGTTTACAAAGCGGTTCAAGCTCTCCAACCACAGGACTACAAGGAACATTTGGCTACTTTGCACCTGAATACGCAATTGCAGGATGTGCTTCACAGATGTCAGATGTTTTCAGCTTTGGTGTTGTTCTACTCGAGCTTATAACCGGAAGGAAACCGATACAGAAACCAAGCAACAACAAAGGCGAAGAAAGCCTAGTTATATGGGCTGTGCCACGGTTACAAGATAGTAAGCGGGTGATCGAGGAACTGCCTGATCCGCGGCTAAACGGGAAGTTTGCGGAAGAAGAGATGCAGATAATGGCGTATCTTGCTAAAGAGTGTTTGCTTTTGGATCCAGAAAGTAGACCAACAATGAGAGAAGTTGTTCAGATTCTTTCAACCATCACACCAGACACATCATCCAGACGTAGAAATTTCCCCATTAATTATCTTTTCCAGAGTAACGAGAAGAAGAAAGAAAGCAAAGTGGGATGGTCAAGAGGAGGGAGCAAGAGTGGACAGGAAGAGGAAACAGTGGATCTGACTGAGCCACGGTTCGAGTCATTCTGCTTGCCGAATGTGAAGCCGGTCTTGCTTGAACCATCTGCACATATTTAA

Protein Analysis

565

Amino Acids

62.19

Weight (kDa)

7.94

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 211 - 490 9e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 213 - 492 7.6e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1241
Acc36I ACCTGC 1 cut(s) 509
Acc65I GGTACC 1 cut(s) 802
AccB1I GGYRCC 1 cut(s) 802
AccBSI CCGCTC 1 cut(s) 995
AccI GTMKAC 1 cut(s) 1444
AccII CGCG 1 cut(s) 1360
AciI CCGC 9 cut(s) 21, 333, 702, 993, 1113, 1333, 1358, 1360, 1379
AclWI GGATC 5 cut(s) 25, 1349, 1427, 1440, 1626
AcsI RAATTY 3 cut(s) 229, 626, 1513
AcuI CTGAAG 2 cut(s) 399, 408
AfaI GTAC 4 cut(s) 91, 339, 804, 869
AfiI CCNNNNNNNGG 3 cut(s) 197, 812, 1133
AflIII ACRYGT 3 cut(s) 86, 92, 870
AgsI TTSAA 6 cut(s) 56, 228, 282, 1119, 1479, 1679
AjnI CCWGG 1 cut(s) 123
Alw26I GTCTC 2 cut(s) 424, 729
AlwI GGATC 5 cut(s) 25, 1349, 1427, 1440, 1626
Ama87I CYCGRG 1 cut(s) 1232
ApeKI GCWGC 3 cut(s) 704, 959, 989
ApoI RAATTY 3 cut(s) 229, 626, 1513
AseI ATTAAT 1 cut(s) 1524
Asp700I GAANNNNTTC 1 cut(s) 1464
Asp718I GGTACC 1 cut(s) 802
AsuHPI GGTGA 1 cut(s) 1348
AvaI CYCGRG 1 cut(s) 1232
BaeI ACNNNNGTAYC 2 cut(s) 959, 992
BamHI GGATCC 1 cut(s) 1432
BanI GGYRCC 1 cut(s) 802
BbvI GCAGC 3 cut(s) 691, 946, 976
BccI CCATC 7 cut(s) 795, 896, 1072, 1094, 1490, 1566, 1690
BciT130I CCWGG 1 cut(s) 125
BcoDI GTCTC 2 cut(s) 424, 729
BfaI CTAG 3 cut(s) 350, 438, 1295
BfuAI ACCTGC 1 cut(s) 509
BglII AGATCT 1 cut(s) 1069
BisI GCNGC 5 cut(s) 705, 960, 990, 993, 1361
BlsI GCNGC 5 cut(s) 706, 961, 991, 994, 1362
Bme1390I CCNGG 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 1232
BmiI GGNNCC 2 cut(s) 804, 1434
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 2 cut(s) 510, 1380
BpuEI CTTGAG 2 cut(s) 616, 992
BsaAI YACGTR 1 cut(s) 93
BsaJI CCNNGG 5 cut(s) 574, 676, 1313, 1358, 1631
BsaWI WCCGGW 2 cut(s) 205, 1244
BsaXI ACNNNNNCTCC 2 cut(s) 1579, 1609
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 812, 1133
Bse118I RCCGGY 1 cut(s) 1666
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 5 cut(s) 574, 676, 1313, 1358, 1631
BseGI GGATG 5 cut(s) 933, 1083, 1190, 1499, 1577
BseLI CCNNNNNNNGG 3 cut(s) 197, 812, 1133
BseMII CTCAG 2 cut(s) 525, 1617
BseRI GAGGAG 2 cut(s) 499, 1596
BseXI GCAGC 3 cut(s) 691, 946, 976
BsgI GTGCAG 1 cut(s) 1671
Bsh1236I CGCG 1 cut(s) 1360
BshNI GGYRCC 1 cut(s) 802
BsiHKCI CYCGRG 1 cut(s) 1232
BsiSI CCGG 3 cut(s) 206, 1245, 1667
BslI CCNNNNNNNGG 3 cut(s) 197, 812, 1133
BsmAI GTCTC 2 cut(s) 424, 729
BsmBI CGTCTC 1 cut(s) 729
BsmI GAATGC 2 cut(s) 353, 541
BsoBI CYCGRG 1 cut(s) 1232
Bsp143I GATC 8 cut(s) 30, 169, 708, 1069, 1338, 1354, 1432, 1618
Bsp19I CCATGG 1 cut(s) 574
BspACI CCGC 9 cut(s) 21, 333, 702, 993, 1113, 1333, 1358, 1360, 1379
BspCNI CTCAG 2 cut(s) 524, 1618
BspFNI CGCG 1 cut(s) 1360
BspHI TCATGA 1 cut(s) 982
BspLI GGNNCC 2 cut(s) 804, 1434
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 5 cut(s) 25, 1349, 1427, 1440, 1626
BspT107I GGYRCC 1 cut(s) 802
BsrBI CCGCTC 1 cut(s) 995
BsrFI RCCGGY 1 cut(s) 1666
BssAI RCCGGY 1 cut(s) 1666
BssECI CCNNGG 5 cut(s) 574, 676, 1313, 1358, 1631
BssMI GATC 8 cut(s) 30, 169, 708, 1069, 1338, 1354, 1432, 1618
BssT1I CCWWGG 1 cut(s) 574
Bst2UI CCWGG 1 cut(s) 125
Bst4CI ACNGT 9 cut(s) 137, 470, 641, 677, 695, 807, 1317, 1615, 1635
Bst6I CTCTTC 5 cut(s) 106, 332, 427, 1380, 1599
BstAPI GCANNNNNTGC 2 cut(s) 359, 1187
BstBAI YACGTR 1 cut(s) 93
BstC8I GCNNGC 4 cut(s) 443, 615, 1056, 1652
BstDEI CTNAG 5 cut(s) 511, 887, 898, 1083, 1626
BstDSI CCRYGG 5 cut(s) 574, 676, 1313, 1358, 1631
BstF5I GGATG 5 cut(s) 933, 1083, 1190, 1499, 1577
BstFNI CGCG 1 cut(s) 1360
BstKTI GATC 8 cut(s) 33, 172, 711, 1072, 1341, 1357, 1435, 1621
BstMAI GTCTC 2 cut(s) 424, 729
BstMBI GATC 8 cut(s) 30, 169, 708, 1069, 1338, 1354, 1432, 1618
BstMWI GCNNNNNNNGC 9 cut(s) 359, 447, 956, 1119, 1187, 1290, 1357, 1409, 1672
BstNI CCWGG 1 cut(s) 125
BstNSI RCATGY 4 cut(s) 90, 845, 874, 1058
BstSCI CCNGG 1 cut(s) 123
BstUI CGCG 1 cut(s) 1360
BstV1I GCAGC 3 cut(s) 691, 946, 976
BstX2I RGATCY 3 cut(s) 1069, 1432, 1618
BstYI RGATCY 3 cut(s) 1069, 1432, 1618
BtgI CCRYGG 5 cut(s) 574, 676, 1313, 1358, 1631
BtgZI GCGATG 1 cut(s) 1113
BtsCI GGATG 5 cut(s) 933, 1083, 1190, 1499, 1577
BtsIMutI CAGTG 4 cut(s) 519, 646, 741, 1620
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 4 cut(s) 443, 615, 1056, 1652
CciI TCATGA 1 cut(s) 982
Cfr10I RCCGGY 1 cut(s) 1666
Cfr42I CCGCGG 1 cut(s) 1361
Csp6I GTAC 4 cut(s) 90, 338, 803, 868
CviQI GTAC 4 cut(s) 90, 338, 803, 868
DdeI CTNAG 5 cut(s) 511, 887, 898, 1083, 1626
DpnI GATC 8 cut(s) 32, 171, 710, 1071, 1340, 1356, 1434, 1620
DpnII GATC 8 cut(s) 30, 169, 708, 1069, 1338, 1354, 1432, 1618
Eam1104I CTCTTC 5 cut(s) 106, 332, 427, 1380, 1599
EarI CTCTTC 5 cut(s) 106, 332, 427, 1380, 1599
Eco130I CCWWGG 1 cut(s) 574
Eco32I GATATC 1 cut(s) 121
Eco57I CTGAAG 2 cut(s) 399, 408
Eco88I CYCGRG 1 cut(s) 1232
EcoRII CCWGG 1 cut(s) 123
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 574
Esp3I CGTCTC 1 cut(s) 729
FalI AAGNNNNNCTT 2 cut(s) 1655, 1687
FauI CCCGC 1 cut(s) 1326
FblI GTMKAC 1 cut(s) 1444
Fnu4HI GCNGC 5 cut(s) 705, 960, 990, 993, 1361
FokI GGATG 5 cut(s) 920, 1090, 1197, 1486, 1584
Fsp4HI GCNGC 5 cut(s) 705, 960, 990, 993, 1361
FspBI CTAG 3 cut(s) 350, 438, 1295
GluI GCNGC 5 cut(s) 705, 960, 990, 993, 1361
HapII CCGG 3 cut(s) 206, 1245, 1667
HinfI GANTC 7 cut(s) 128, 434, 783, 939, 1002, 1471, 1640
HpaII CCGG 3 cut(s) 206, 1245, 1667
HphI GGTGA 1 cut(s) 1348
Hpy166II GTNNAC 6 cut(s) 338, 673, 680, 1106, 1445, 1598
Hpy188I TCNGA 7 cut(s) 427, 534, 826, 938, 1204, 1470, 1623
Hpy188III TCNNGA 7 cut(s) 402, 780, 983, 1436, 1503, 1537, 1578
Hpy8I GTNNAC 6 cut(s) 338, 673, 680, 1106, 1445, 1598
HpyAV CCTTC 2 cut(s) 423, 1242
HpyCH4III ACNGT 9 cut(s) 137, 470, 641, 677, 695, 807, 1317, 1615, 1635
HpyCH4IV ACGT 3 cut(s) 92, 715, 1507
HpyF10VI GCNNNNNNNGC 9 cut(s) 359, 447, 956, 1119, 1187, 1290, 1357, 1409, 1672
HpyF3I CTNAG 5 cut(s) 511, 887, 898, 1083, 1626
HpySE526I ACGT 3 cut(s) 92, 715, 1507
KpnI GGTACC 1 cut(s) 806
KspI CCGCGG 1 cut(s) 1361
Kzo9I GATC 8 cut(s) 30, 169, 708, 1069, 1338, 1354, 1432, 1618
LmnI GCTCC 5 cut(s) 512, 578, 956, 1000, 1587
Lsp1109I GCAGC 3 cut(s) 691, 946, 976
LweI GCATC 2 cut(s) 510, 1380
MaeI CTAG 3 cut(s) 350, 438, 1295
MaeII ACGT 3 cut(s) 92, 715, 1507
MaeIII GTNAC 4 cut(s) 374, 635, 1317, 1541
MalI GATC 8 cut(s) 32, 171, 710, 1071, 1340, 1356, 1434, 1620
MbiI CCGCTC 1 cut(s) 995
MboI GATC 8 cut(s) 30, 169, 708, 1069, 1338, 1354, 1432, 1618
MfeI CAATTG 1 cut(s) 1176
MflI RGATCY 3 cut(s) 1069, 1432, 1618
MlyI GAGTC 2 cut(s) 777, 1649
MmeI TCCRAC 1 cut(s) 1151
MroXI GAANNNNTTC 1 cut(s) 1464
MseI TTAA 4 cut(s) 461, 809, 1524, 1696
MslI CAYNNNNRTG 3 cut(s) 91, 795, 1014
MspA1I CMGCKG 2 cut(s) 704, 1360
MspI CCGG 3 cut(s) 206, 1245, 1667
MspR9I CCNGG 1 cut(s) 125
MunI CAATTG 1 cut(s) 1176
Mva1269I GAATGC 2 cut(s) 353, 541
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 1 cut(s) 1360
MwoI GCNNNNNNNGC 9 cut(s) 359, 447, 956, 1119, 1187, 1290, 1357, 1409, 1672
NcoI CCATGG 1 cut(s) 574
NdeII GATC 8 cut(s) 30, 169, 708, 1069, 1338, 1354, 1432, 1618
NlaIV GGNNCC 2 cut(s) 804, 1434
NspI RCATGY 4 cut(s) 90, 845, 874, 1058
PaeI GCATGC 1 cut(s) 1058
PaeR7I CTCGAG 1 cut(s) 1232
PagI TCATGA 1 cut(s) 982
PciI ACATGT 2 cut(s) 86, 870
PctI GAATGC 2 cut(s) 353, 541
PdmI GAANNNNTTC 1 cut(s) 1464
PfeI GAWTC 5 cut(s) 128, 434, 939, 1002, 1471
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 5 cut(s) 706, 961, 991, 994, 1362
PleI GAGTC 2 cut(s) 777, 1648
PpsI GAGTC 2 cut(s) 777, 1648
Ppu21I YACGTR 1 cut(s) 93
PscI ACATGT 2 cut(s) 86, 870
PshBI ATTAAT 1 cut(s) 1524
PsiI TTATAA 1 cut(s) 1241
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 804, 1434
PspXI VCTCGAGB 1 cut(s) 1232
PsuI RGATCY 3 cut(s) 1069, 1432, 1618
RsaI GTAC 4 cut(s) 91, 339, 804, 869
RsaNI GTAC 4 cut(s) 90, 338, 803, 868
RseI CAYNNNNRTG 3 cut(s) 91, 795, 1014
SacII CCGCGG 1 cut(s) 1361
SaqAI TTAA 4 cut(s) 461, 809, 1524, 1696
SatI GCNGC 5 cut(s) 705, 960, 990, 993, 1361
Sau3AI GATC 8 cut(s) 30, 169, 708, 1069, 1338, 1354, 1432, 1618
SchI GAGTC 2 cut(s) 777, 1649
ScrFI CCNGG 1 cut(s) 125
SfaNI GCATC 2 cut(s) 510, 1380
Sfr274I CTCGAG 1 cut(s) 1232
Sfr303I CCGCGG 1 cut(s) 1361
SgrBI CCGCGG 1 cut(s) 1361
SlaI CTCGAG 1 cut(s) 1232
SmiMI CAYNNNNRTG 3 cut(s) 91, 795, 1014
SmlI CTYRAG 3 cut(s) 631, 971, 1232
SmoI CTYRAG 3 cut(s) 631, 971, 1232
SphI GCATGC 1 cut(s) 1058
SsiI CCGC 9 cut(s) 21, 333, 702, 993, 1113, 1333, 1358, 1360, 1379
SspI AATATT 2 cut(s) 293, 1033
SspMI CTAG 3 cut(s) 350, 438, 1295
StyD4I CCNGG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 574
TaaI ACNGT 9 cut(s) 137, 470, 641, 677, 695, 807, 1317, 1615, 1635
TaiI ACGT 3 cut(s) 95, 718, 1510
TaqI TCGA 6 cut(s) 112, 299, 491, 1233, 1341, 1638
TatI WGTACW 2 cut(s) 337, 867
TauI GCSGC 2 cut(s) 995, 1363
TfiI GAWTC 5 cut(s) 128, 434, 939, 1002, 1471
Tru1I TTAA 4 cut(s) 461, 809, 1524, 1696
Tru9I TTAA 4 cut(s) 461, 809, 1524, 1696
TscAI CASTG 4 cut(s) 519, 646, 748, 1620
TseI GCWGC 3 cut(s) 704, 959, 989
TspDTI ATGAA 5 cut(s) 17, 237, 821, 971, 999
TspRI CASTG 4 cut(s) 519, 646, 748, 1620
VspI ATTAAT 1 cut(s) 1524
XapI RAATTY 3 cut(s) 229, 626, 1513
XceI RCATGY 4 cut(s) 90, 845, 874, 1058
XhoI CTCGAG 1 cut(s) 1232
XmiI GTMKAC 1 cut(s) 1444
XmnI GAANNNNTTC 1 cut(s) 1464
XspI CTAG 3 cut(s) 350, 438, 1295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.