Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002472

Physical Location & Seq

Genomic Coordinates Reverse (-)

37477968 .. 37478762

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0315500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCAGCCAGGGGGCTGTGGTACAAGATTCGGCCTTCATCCGGCTAAACATACTGGATGGTCTATGGCGGCACCGGATTTTCCGACGATCGGGCTGACAAGGACCCGGGAGGAGTGGGAGGAGAATTCCGGCCAACTGGGACCTAGAGATGAGAATGACATGGAGGTAGTGGTAGAGAGTACAGAGGAGGGGCGCACCAGTGAGCCAAACCATAAGAGGAGGAAGCTAGAGGTGGAGCGGGGGACGACGACGGCGGAGGGGCTCACGGAAGTTACTATTATGGATTGTTCTTCTTTGAGGGAGGCAGTATTGTCGAGCTCGGTGATAGCACAATCATCACTTAAGGTCCCACTTCCGGATATTCATCCATTGTTTGTGGATCAGGTTTTAATTCAAAAGCAGTCACAGTCGGCTGATCCCTTAATTAAGGAGTTGATTAGGAAGGGGAGTAAGGGTACAGCTGGAAAGTCAAAGGAAGTGGGGTCGGGTAATTATCAATCCATGCAAAAGCCTTTGAAGGATGGCCAGAAATGTTCCATGATTGATGACCATAATGAAGTCCAAAATGGGATTCGACCAAGTGGGGGACAGGGAGGGGCCAACCTGTCTCCATCAACCAAGAGGCCTATTGGGAAGATTCTAGAATGTTCCAAGAAGTCCAAGAAGGCTAGTAAGAAGGGGTTCTTGGTGCGAAAACTCCCTAGCTCTCCGAGTCGGAATTTACCTTTGAGTCTTGGACGTACTCTAAAACGTTCCTCCGTGATGGGTCCGGCACTGACCCATCACGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009888 GO:0009987 GO:0010008 GO:0010087 GO:0010089 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0031090 GO:0031410 GO:0031982 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

264

Amino Acids

28.67

Weight (kDa)

9.49

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28250 AT2G28250 AT2G28250 AT2G28250 AT2G28250 AT2G28250
fragaria_vesca	FvH4_3g31760 FvH4_3g31760 FvH4_3g31760 FvH4_3g31760 FvH4_3g31760 FvH4_3g31760 FvH4_3g31760 FvH4_3g31760 FvH4_3g31760 FvH4_3g31760 FvH4_3g31760 FvH4_3g31760 FvH4_3g31760 FvH4_3g31760 FvH4_3g31760 FvH4_3g31760
malus_domestica	MD03G1120900.v1.1 MD11G1139700.v1.1
prunus_persica	Prupe.6G104400_v2.0.a1
pyrus_communis	pycom11g11530
rosa_chinensis	RchiOBHm_Chr5g0058481
rosa_laevigata	RLG00000035227
rosa_multiflora	Rmu_sc0000367.1_g000133
rosa_roxburghii	Rroxscaffold_1G00022020
rosa_rugosa	Rorug05G0315400 Rorug05G0315400 Rorug05G0315400 Rorug05G0315500 Rorug05G0315600 Rorug05G0315700
rosa_samantha	Rh5AG381600 Rh5BG393200 Rh5CG417400 Rh5DG408600
rosa_wichuraiana	Rw5G035960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	70
AccBSI	CCGCTC	1 cut(s)	238
AccIII	TCCGGA	1 cut(s)	355
AciI	CCGC	3 cut(s)	68, 238, 254
AclI	AACGTT	1 cut(s)	751
AclWI	GGATC	2 cut(s)	387, 410
AcoI	YGGCCR	2 cut(s)	130, 523
AcsI	RAATTY	2 cut(s)	124, 718
AfaI	GTAC	4 cut(s)	22, 181, 457, 742
AfiI	CCNNNNNNNGG	4 cut(s)	40, 89, 355, 584
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	395, 517
AjnI	CCWGG	1 cut(s)	7
AjuI	GAANNNNNNNTTGG	4 cut(s)	555, 587, 668, 700
AluBI	AGCT	4 cut(s)	226, 318, 461, 705
AluI	AGCT	4 cut(s)	226, 318, 461, 705
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	612
AlwI	GGATC	2 cut(s)	387, 410
Ama87I	CYCGRG	1 cut(s)	105
Aor13HI	TCCGGA	1 cut(s)	355
AoxI	GGCC	5 cut(s)	31, 130, 523, 597, 623
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	2 cut(s)	124, 718
Asp700I	GAANNNNTTC	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	5 cut(s)	102, 140, 346, 597, 767
AsuC2I	CCSGG	2 cut(s)	106, 107
AsuHPI	GGTGA	1 cut(s)	334
AvaI	CYCGRG	1 cut(s)	105
AvaII	GGWCC	4 cut(s)	102, 140, 346, 767
BalI	TGGCCA	1 cut(s)	525
BanI	GGYRCC	1 cut(s)	70
BanII	GRGCYC	2 cut(s)	264, 320
BauI	CACGAG	1 cut(s)	785
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	5 cut(s)	51, 515, 619, 757, 789
BceAI	ACGGC	1 cut(s)	267
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BciT130I	CCWGG	1 cut(s)	9
BcnI	CCSGG	2 cut(s)	106, 107
BcoDI	GTCTC	1 cut(s)	612
BfaI	CTAG	5 cut(s)	144, 227, 641, 669, 702
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	2 cut(s)	5, 69
BlsI	GCNGC	2 cut(s)	6, 70
Bme1390I	CCNGG	3 cut(s)	9, 106, 107
Bme18I	GGWCC	4 cut(s)	102, 140, 346, 767
BmeT110I	CYCGRG	1 cut(s)	105
BmgT120I	GGNCC	5 cut(s)	102, 140, 346, 597, 767
BmiI	GGNNCC	6 cut(s)	72, 104, 141, 348, 598, 768
BmrFI	CCNGG	3 cut(s)	9, 106, 107
BmrI	ACTGGG	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	146
BpuMI	CCSGG	2 cut(s)	106, 107
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	8, 105
BsaWI	WCCGGW	2 cut(s)	73, 355
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 89, 355, 584
Bse1I	ACTGG	3 cut(s)	58, 141, 198
Bse8I	GATNNNNATC	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	8, 105
BseGI	GGATG	4 cut(s)	37, 62, 364, 526
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	4 cut(s)	40, 89, 355, 584
BseNI	ACTGG	3 cut(s)	58, 141, 198
BseRI	GAGGAG	4 cut(s)	125, 134, 200, 232
BseXI	GCAGC	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	5 cut(s)	33, 132, 525, 599, 625
BshNI	GGYRCC	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	6 cut(s)	41, 74, 106, 129, 356, 770
BslFI	GGGAC	4 cut(s)	153, 256, 332, 600
BslI	CCNNNNNNNGG	4 cut(s)	40, 89, 355, 584
BsmAI	GTCTC	1 cut(s)	612
BsmFI	GGGAC	4 cut(s)	153, 256, 332, 600
BsnI	GGCC	5 cut(s)	33, 132, 525, 599, 625
BsoBI	CYCGRG	1 cut(s)	105
Bsp1286I	GDGCHC	2 cut(s)	264, 320
Bsp13I	TCCGGA	1 cut(s)	355
Bsp143I	GATC	3 cut(s)	87, 379, 415
BspACI	CCGC	3 cut(s)	68, 238, 254
BspANI	GGCC	5 cut(s)	33, 132, 525, 599, 625
BspEI	TCCGGA	1 cut(s)	355
BspLI	GGNNCC	6 cut(s)	72, 104, 141, 348, 598, 768
BspPI	GGATC	2 cut(s)	387, 410
BspT107I	GGYRCC	1 cut(s)	70
BspTI	CTTAAG	1 cut(s)	341
BsrBI	CCGCTC	1 cut(s)	238
BsrI	ACTGG	3 cut(s)	58, 141, 198
BssECI	CCNNGG	2 cut(s)	8, 105
BssMI	GATC	3 cut(s)	87, 379, 415
BssSI	CACGAG	1 cut(s)	785
Bst2BI	CACGAG	1 cut(s)	785
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	408
BstAFI	CTTAAG	1 cut(s)	341
BstF5I	GGATG	4 cut(s)	37, 62, 364, 526
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	3 cut(s)	90, 382, 418
BstMAI	GTCTC	1 cut(s)	612
BstMBI	GATC	3 cut(s)	87, 379, 415
BstMCI	CGRYCG	1 cut(s)	90
BstNI	CCWGG	1 cut(s)	9
BstSCI	CCNGG	3 cut(s)	7, 104, 105
BstV1I	GCAGC	1 cut(s)	16
BsuRI	GGCC	5 cut(s)	33, 132, 525, 599, 625
BtsCI	GGATG	4 cut(s)	37, 62, 364, 526
BtsIMutI	CAGTG	2 cut(s)	205, 773
CfoI	GCGC	1 cut(s)	195
Cfr13I	GGNCC	5 cut(s)	102, 140, 346, 597, 767
Cfr9I	CCCGGG	1 cut(s)	105
Csp6I	GTAC	4 cut(s)	21, 180, 456, 741
CspCI	CAANNNNNGTGG	2 cut(s)	459, 494
CviAII	CATG	3 cut(s)	160, 502, 538
CviQI	GTAC	4 cut(s)	21, 180, 456, 741
DpnI	GATC	3 cut(s)	89, 381, 417
DpnII	GATC	3 cut(s)	87, 379, 415
EaeI	YGGCCR	2 cut(s)	130, 523
EciI	GGCGGA	1 cut(s)	269
Ecl136II	GAGCTC	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	625
Eco24I	GRGCYC	2 cut(s)	264, 320
Eco47I	GGWCC	4 cut(s)	102, 140, 346, 767
Eco53kI	GAGCTC	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	318
EcoO109I	RGGNCCY	3 cut(s)	102, 140, 346
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	7
EcoT38I	GRGCYC	2 cut(s)	264, 320
FaeI	CATG	3 cut(s)	163, 505, 541
FaiI	YATR	8 cut(s)	51, 65, 161, 213, 281, 503, 539, 552
FalI	AAGNNNNNCTT	2 cut(s)	668, 700
FaqI	GGGAC	4 cut(s)	153, 256, 332, 600
FatI	CATG	3 cut(s)	159, 501, 537
FauI	CCCGC	1 cut(s)	231
Fnu4HI	GCNGC	2 cut(s)	5, 69
FokI	GGATG	4 cut(s)	24, 69, 351, 533
FriOI	GRGCYC	2 cut(s)	264, 320
Fsp4HI	GCNGC	2 cut(s)	5, 69
FspBI	CTAG	5 cut(s)	144, 227, 641, 669, 702
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	2 cut(s)	5, 69
HaeIII	GGCC	5 cut(s)	33, 132, 525, 599, 625
HapII	CCGG	6 cut(s)	41, 74, 106, 129, 356, 770
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	3 cut(s)	163, 505, 541
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HinfI	GANTC	5 cut(s)	27, 571, 637, 712, 730
HpaII	CCGG	6 cut(s)	41, 74, 106, 129, 356, 770
HphI	GGTGA	1 cut(s)	334
Hpy188I	TCNGA	3 cut(s)	84, 711, 717
Hpy188III	TCNNGA	3 cut(s)	356, 641, 785
Hpy99I	CGWCG	3 cut(s)	88, 250, 253
HpyAV	CCTTC	5 cut(s)	44, 436, 511, 658, 670
HpyCH4III	ACNGT	1 cut(s)	408
HpyCH4IV	ACGT	2 cut(s)	739, 751
HpyCH4V	TGCA	2 cut(s)	4, 505
HpySE526I	ACGT	2 cut(s)	739, 751
Hsp92II	CATG	3 cut(s)	163, 505, 541
HspAI	GCGC	1 cut(s)	193
Kpn2I	TCCGGA	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	87, 379, 415
LmnI	GCTCC	1 cut(s)	235
Lsp1109I	GCAGC	1 cut(s)	16
MaeI	CTAG	5 cut(s)	144, 227, 641, 669, 702
MaeII	ACGT	2 cut(s)	739, 751
MaeIII	GTNAC	2 cut(s)	271, 402
MalI	GATC	3 cut(s)	89, 381, 417
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	3 cut(s)	87, 379, 415
MboII	GAAGA	2 cut(s)	282, 646
MhlI	GDGCHC	2 cut(s)	264, 320
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	5 cut(s)	124, 390, 423, 490, 718
MluNI	TGGCCA	1 cut(s)	525
MlyI	GAGTC	2 cut(s)	721, 739
MmeI	TCCRAC	2 cut(s)	107, 695
Mox20I	TGGCCA	1 cut(s)	525
MroI	TCCGGA	1 cut(s)	355
MroXI	GAANNNNTTC	1 cut(s)	680
MscI	TGGCCA	1 cut(s)	525
MseI	TTAA	4 cut(s)	342, 389, 422, 426
Msp20I	TGGCCA	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	461
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	6 cut(s)	41, 74, 106, 129, 356, 770
MspR9I	CCNGG	3 cut(s)	9, 106, 107
MvaI	CCWGG	1 cut(s)	9
NciI	CCSGG	2 cut(s)	106, 107
NdeII	GATC	3 cut(s)	87, 379, 415
NlaIII	CATG	3 cut(s)	163, 505, 541
NlaIV	GGNNCC	6 cut(s)	72, 104, 141, 348, 598, 768
NmuCI	GTSAC	1 cut(s)	402
PacI	TTAATTAA	1 cut(s)	426
PceI	AGGCCT	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	680
PfeI	GAWTC	3 cut(s)	27, 571, 637
PkrI	GCNGC	2 cut(s)	6, 70
Ple19I	CGATCG	1 cut(s)	90
PleI	GAGTC	2 cut(s)	720, 738
PpsI	GAGTC	2 cut(s)	720, 738
PpuMI	RGGWCCY	3 cut(s)	102, 140, 346
Psp124BI	GAGCTC	1 cut(s)	320
Psp1406I	AACGTT	1 cut(s)	751
Psp5II	RGGWCCY	3 cut(s)	102, 140, 346
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	6 cut(s)	72, 104, 141, 348, 598, 768
PspPI	GGNCC	5 cut(s)	102, 140, 346, 597, 767
PspPPI	RGGWCCY	3 cut(s)	102, 140, 346
PvuI	CGATCG	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	4 cut(s)	22, 181, 457, 742
RsaNI	GTAC	4 cut(s)	21, 180, 456, 741
SacI	GAGCTC	1 cut(s)	320
SaqAI	TTAA	4 cut(s)	342, 389, 422, 426
SatI	GCNGC	2 cut(s)	5, 69
Sau3AI	GATC	3 cut(s)	87, 379, 415
Sau96I	GGNCC	5 cut(s)	102, 140, 346, 597, 767
SchI	GAGTC	2 cut(s)	721, 739
ScrFI	CCNGG	3 cut(s)	9, 106, 107
SduI	GDGCHC	2 cut(s)	264, 320
SinI	GGWCC	4 cut(s)	102, 140, 346, 767
SmaI	CCCGGG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	5 cut(s)	124, 390, 423, 490, 718
SseBI	AGGCCT	1 cut(s)	625
SsiI	CCGC	3 cut(s)	68, 238, 254
SspMI	CTAG	5 cut(s)	144, 227, 641, 669, 702
SstI	GAGCTC	1 cut(s)	320
StuI	AGGCCT	1 cut(s)	625
StyD4I	CCNGG	3 cut(s)	7, 104, 105
TaaI	ACNGT	1 cut(s)	408
TaiI	ACGT	2 cut(s)	742, 754
TaqI	TCGA	2 cut(s)	314, 574
TasI	AATT	5 cut(s)	124, 390, 423, 490, 718
TatI	WGTACW	1 cut(s)	179
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	3 cut(s)	27, 571, 637
Tru1I	TTAA	4 cut(s)	342, 389, 422, 426
Tru9I	TTAA	4 cut(s)	342, 389, 422, 426
TscAI	CASTG	2 cut(s)	205, 780
TseFI	GTSAC	1 cut(s)	402
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	402
TspDTI	ATGAA	3 cut(s)	26, 353, 570
TspGWI	ACGGA	2 cut(s)	281, 748
TspMI	CCCGGG	1 cut(s)	105
TspRI	CASTG	2 cut(s)	205, 780
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	4 cut(s)	102, 140, 346, 767
XapI	RAATTY	2 cut(s)	124, 718
XbaI	TCTAGA	1 cut(s)	640
XmaI	CCCGGG	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	680
XspI	CTAG	5 cut(s)	144, 227, 641, 669, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.