Rorug05G0315600

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
37490104 .. 37492851
2748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0315600.1

Sequence Viewer

Length: 1272 bp
ATGGCTTTGGAAGTGGCGTTTGGAGCTGTTCTTACTGTTCTGGTTGATAGACTTGCTTCCCGCCGCGTTGTTGCCTTTATCCGTGGAAAGAAAGTCAATAATGTCGGGTTGATCAGGAAGTTGAAACAGATGTTACTTTCAGCTAATGCAGGGCTAGGTGATGCTGAAGAGAAGCAGACCAGAAACAAAGCGGTGAGGGCATGGCTTGGTGAGCTTAAAGATGCTCTTAATGAAGCAGACAGCTTGCTCAATGAGATAGGCTCCGAAGCTCTGCGACGCAGGCTGGAAGAAGCTGAATTTGGAAGCAGCAGCACAAGTGAGGTACAAAACTTGATCGATTCTAGTGATGAATTTGACGAAAGTCTTAAGCCCAAGATACTTGATATTCTTGATAACTTAGAGTACATTGTAGATGAAAAGAAAGTGCTTGGTTTGAGAGATGAGTTAACATTTGGTCTAGAAGAAATCTTACCCACAACATCTTTGCAAGAGGACTCTGGTGTGTTGTATGGAAGGGACGAAGACAAGGAGATCATTGTCAAGTTACTATTATCAGACGATGCGTCGACATCCACCTCAAATCGTGTAAGGGTGATTCCAATTCTGGGCAGGACTGGGATTGGGAAGACAGAGCTTGCTCGGTCGGTAAACAATGATATTAGAGTGAAGAACCATTTTGACCTCCAAGCATGGATTTGGGTTTCAAAAGATTTTGATATTGTTGGAATTACACAAACAATTTATGGGTCAATCACTTCACAAAGGTGTGATATTGAGGACCTTAATCTGCTGCAGATTAAGCTCAAGGAGGCATTAACGGGGACGAGGTTTCTCTTGGTCCTTGATGATGTCTGGGACTTAAGTTACATTTCTTGGGATTTATTAAGGCGTCCCTTTGAGAATGAAGCATGTCAAAGTAAGATCATCATCACTACACGCGATAAACACATTGCATCCATGATGGGTACTCTTCCTGCTCATTATCTAATGGAAATATCCGATGAAGATTGCTGGTTGTTGTTTGTGAAGCACGCCTTTGAAAACGCAGGTACCACTGCACATTCAAATCCTGAAGTGATTCGAAGACAAATTGTTAGGAAATGTAAAGGCAGTCCTTTAGTTGCGAAAACACTCGGGGGTCTCATGCGCTCTGAAAGAAATCTAGATAAGTGGGAACTAATATTGGGCCAAGATCAGCCAGAGATTGCTCACACCGCTCGCATAGAGGGCGGTTGGGAACTCAATGAGTCCTACGCAAATCCTTGCTTGTAA

Protein Analysis

423

Amino Acids

47.56

Weight (kDa)

5.12

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 35 - 99 4.6e-12 Rx N-terminal domain
NB-ARC PF00931 193 - 348 2.7e-33 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1037
Acc65I GGTACC 1 cut(s) 1049
AccB1I GGYRCC 1 cut(s) 1049
AccBSI CCGCTC 1 cut(s) 1217
AccI GTMKAC 1 cut(s) 566
AccII CGCG 2 cut(s) 66, 939
AciI CCGC 5 cut(s) 61, 64, 191, 1215, 1230
AcsI RAATTY 2 cut(s) 296, 350
AcuI CTGAAG 2 cut(s) 186, 1092
AcyI GRCGYC 1 cut(s) 889
AfaI GTAC 4 cut(s) 324, 404, 967, 1051
AfiI CCNNNNNNNGG 1 cut(s) 605
AflII CTTAAG 2 cut(s) 365, 859
AgsI TTSAA 4 cut(s) 124, 705, 1040, 1065
AhdI GACNNNNNGTC 1 cut(s) 562
AjuI GAANNNNNNNTTGG 3 cut(s) 35, 282, 314
AleI CACNNNNGTG 1 cut(s) 763
AluBI AGCT 8 cut(s) 26, 143, 214, 243, 269, 293, 634, 802
AluI AGCT 8 cut(s) 26, 143, 214, 243, 269, 293, 634, 802
Alw26I GTCTC 1 cut(s) 1145
Ama87I CYCGRG 1 cut(s) 1133
AoxI GGCC 1 cut(s) 1186
ApeKI GCWGC 3 cut(s) 306, 309, 790
ApoI RAATTY 2 cut(s) 296, 350
Asp700I GAANNNNTTC 1 cut(s) 1077
Asp718I GGTACC 1 cut(s) 1049
AspLEI GCGC 1 cut(s) 1149
AspS9I GGNCC 3 cut(s) 778, 838, 1186
AsuHPI GGTGA 4 cut(s) 170, 205, 221, 604
AsuII TTCGAA 1 cut(s) 1081
AvaI CYCGRG 1 cut(s) 1133
AvaII GGWCC 2 cut(s) 778, 838
BaeI ACNNNNGTAYC 2 cut(s) 1033, 1066
BanI GGYRCC 1 cut(s) 1049
BarI GAAGNNNNNNTAC 2 cut(s) 453, 485
BbsI GAAGAC 3 cut(s) 528, 632, 1090
BbvI GCAGC 3 cut(s) 318, 321, 777
BccI CCATC 1 cut(s) 955
BclI TGATCA 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 1145
BfaI CTAG 4 cut(s) 155, 342, 458, 1163
BfmI CTRYAG 1 cut(s) 791
BfrI CTTAAG 2 cut(s) 365, 859
BfuAI ACCTGC 1 cut(s) 1037
BisI GCNGC 4 cut(s) 64, 307, 310, 791
BlsI GCNGC 4 cut(s) 65, 308, 311, 792
Bme18I GGWCC 2 cut(s) 778, 838
BmeRI GACNNNNNGTC 1 cut(s) 562
BmeT110I CYCGRG 1 cut(s) 1133
BmgT120I GGNCC 3 cut(s) 778, 838, 1186
BmiI GGNNCC 2 cut(s) 262, 1051
BmrI ACTGGG 1 cut(s) 624
BmsI GCATC 4 cut(s) 151, 211, 550, 962
BmuI ACTGGG 1 cut(s) 624
BoxI GACNNNNGTC 1 cut(s) 360
BpiI GAAGAC 3 cut(s) 528, 632, 1090
BplI GAGNNNNNCTC 2 cut(s) 245, 277
Bpu14I TTCGAA 1 cut(s) 1081
BpuEI CTTGAG 1 cut(s) 788
Bsa29I ATCGAT 1 cut(s) 336
BsaBI GATNNNNATC 1 cut(s) 926
BsaHI GRCGYC 1 cut(s) 889
BsaI GGTCTC 1 cut(s) 1145
BsaJI CCNNGG 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse1I ACTGG 1 cut(s) 619
Bse3DI GCAATG 1 cut(s) 948
Bse8I GATNNNNATC 1 cut(s) 926
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 2 cut(s) 569, 953
BseJI GATNNNNATC 1 cut(s) 926
BseLI CCNNNNNNNGG 1 cut(s) 605
BseMI GCAATG 1 cut(s) 948
BseNI ACTGG 1 cut(s) 619
BseXI GCAGC 3 cut(s) 318, 321, 777
BsgI GTGCAG 1 cut(s) 1041
Bsh1236I CGCG 2 cut(s) 66, 939
Bsh1285I CGRYCG 1 cut(s) 644
BshFI GGCC 1 cut(s) 1188
BshNI GGYRCC 1 cut(s) 1049
BshVI ATCGAT 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 644
BsiHKCI CYCGRG 1 cut(s) 1133
BslFI GGGAC 4 cut(s) 530, 835, 869, 876
BslI CCNNNNNNNGG 1 cut(s) 605
BsmAI GTCTC 1 cut(s) 1145
BsmFI GGGAC 4 cut(s) 530, 835, 869, 876
BsnI GGCC 1 cut(s) 1188
Bso31I GGTCTC 1 cut(s) 1145
BsoBI CYCGRG 1 cut(s) 1133
Bsp119I TTCGAA 1 cut(s) 1081
Bsp143I GATC 5 cut(s) 111, 333, 531, 921, 1192
BspACI CCGC 5 cut(s) 61, 64, 191, 1215, 1230
BspANI GGCC 1 cut(s) 1188
BspDI ATCGAT 1 cut(s) 336
BspFNI CGCG 2 cut(s) 66, 939
BspLI GGNNCC 2 cut(s) 262, 1051
BspMAI CTGCAG 1 cut(s) 795
BspMI ACCTGC 1 cut(s) 1037
BspT104I TTCGAA 1 cut(s) 1081
BspT107I GGYRCC 1 cut(s) 1049
BspTI CTTAAG 2 cut(s) 365, 859
BspTNI GGTCTC 1 cut(s) 1145
BsrBI CCGCTC 1 cut(s) 1217
BsrDI GCAATG 1 cut(s) 948
BsrI ACTGG 1 cut(s) 619
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 5 cut(s) 111, 333, 531, 921, 1192
BssNI GRCGYC 1 cut(s) 889
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 2 cut(s) 162, 975
BstACI GRCGYC 1 cut(s) 889
BstAFI CTTAAG 2 cut(s) 365, 859
BstBI TTCGAA 1 cut(s) 1081
BstC8I GCNNGC 5 cut(s) 245, 281, 636, 1032, 1219
BstDEI CTNAG 1 cut(s) 397
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 2 cut(s) 569, 953
BstFNI CGCG 2 cut(s) 66, 939
BstHHI GCGC 1 cut(s) 1149
BstKTI GATC 5 cut(s) 114, 336, 534, 924, 1195
BstMAI GTCTC 1 cut(s) 1145
BstMBI GATC 5 cut(s) 111, 333, 531, 921, 1192
BstMCI CGRYCG 1 cut(s) 644
BstMWI GCNNNNNNNGC 7 cut(s) 23, 197, 211, 280, 799, 1214, 1227
BstNSI RCATGY 1 cut(s) 912
BstPAI GACNNNNGTC 1 cut(s) 360
BstSFI CTRYAG 1 cut(s) 791
BstUI CGCG 2 cut(s) 66, 939
BstV1I GCAGC 3 cut(s) 318, 321, 777
BstV2I GAAGAC 3 cut(s) 528, 632, 1090
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 1 cut(s) 1188
BsuTUI ATCGAT 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 2 cut(s) 569, 953
BtsI GCAGTG 1 cut(s) 1053
BtsIMutI CAGTG 1 cut(s) 1053
BveI ACCTGC 1 cut(s) 1037
Cac8I GCNNGC 5 cut(s) 245, 281, 636, 1032, 1219
CfoI GCGC 1 cut(s) 1149
Cfr13I GGNCC 3 cut(s) 778, 838, 1186
ClaI ATCGAT 1 cut(s) 336
CseI GACGC 3 cut(s) 285, 552, 878
Csp6I GTAC 4 cut(s) 323, 403, 966, 1050
CviAII CATG 5 cut(s) 201, 690, 909, 958, 1144
CviQI GTAC 4 cut(s) 323, 403, 966, 1050
DdeI CTNAG 1 cut(s) 397
DpnI GATC 5 cut(s) 113, 335, 533, 923, 1194
DpnII GATC 5 cut(s) 111, 333, 531, 921, 1192
DriI GACNNNNNGTC 1 cut(s) 562
Eam1104I CTCTTC 2 cut(s) 162, 975
Eam1105I GACNNNNNGTC 1 cut(s) 562
EarI CTCTTC 2 cut(s) 162, 975
Eco31I GGTCTC 1 cut(s) 1145
Eco47I GGWCC 2 cut(s) 778, 838
Eco57I CTGAAG 2 cut(s) 186, 1092
Eco88I CYCGRG 1 cut(s) 1133
EcoO109I RGGNCCY 1 cut(s) 778
FaeI CATG 5 cut(s) 204, 693, 912, 961, 1147
FaiI YATR 8 cut(s) 202, 510, 691, 744, 910, 959, 1145, 1223
FalI AAGNNNNNCTT 4 cut(s) 210, 242, 1019, 1051
FaqI GGGAC 4 cut(s) 530, 835, 869, 876
FatI CATG 5 cut(s) 200, 689, 908, 957, 1143
FauI CCCGC 1 cut(s) 68
FbaI TGATCA 1 cut(s) 111
FblI GTMKAC 1 cut(s) 566
Fnu4HI GCNGC 4 cut(s) 64, 307, 310, 791
FokI GGATG 2 cut(s) 556, 940
Fsp4HI GCNGC 4 cut(s) 64, 307, 310, 791
FspBI CTAG 4 cut(s) 155, 342, 458, 1163
GlaI GCGC 1 cut(s) 1148
GluI GCNGC 4 cut(s) 64, 307, 310, 791
HaeIII GGCC 1 cut(s) 1188
HgaI GACGC 3 cut(s) 285, 552, 878
HhaI GCGC 1 cut(s) 1149
Hin1I GRCGYC 1 cut(s) 889
Hin1II CATG 5 cut(s) 204, 693, 912, 961, 1147
Hin6I GCGC 1 cut(s) 1147
HinP1I GCGC 1 cut(s) 1147
HincII GTYRAC 2 cut(s) 447, 567
HindII GTYRAC 2 cut(s) 447, 567
HinfI GANTC 5 cut(s) 338, 494, 595, 1078, 1247
HpaI GTTAAC 1 cut(s) 447
HphI GGTGA 4 cut(s) 170, 205, 221, 604
Hpy166II GTNNAC 3 cut(s) 447, 567, 649
Hpy188I TCNGA 4 cut(s) 265, 556, 1000, 1153
Hpy188III TCNNGA 5 cut(s) 115, 389, 458, 1070, 1163
Hpy8I GTNNAC 3 cut(s) 447, 567, 649
Hpy99I CGWCG 2 cut(s) 279, 568
HpyAV CCTTC 1 cut(s) 507
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 5 cut(s) 149, 487, 793, 953, 1058
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 197, 211, 280, 799, 1214, 1227
HpyF3I CTNAG 1 cut(s) 397
Hsp92I GRCGYC 1 cut(s) 889
Hsp92II CATG 5 cut(s) 204, 693, 912, 961, 1147
HspAI GCGC 1 cut(s) 1147
KpnI GGTACC 1 cut(s) 1053
Ksp22I TGATCA 1 cut(s) 111
KspAI GTTAAC 1 cut(s) 447
Kzo9I GATC 5 cut(s) 111, 333, 531, 921, 1192
LmnI GCTCC 2 cut(s) 23, 266
Lsp1109I GCAGC 3 cut(s) 318, 321, 777
LweI GCATC 4 cut(s) 151, 211, 550, 962
MaeI CTAG 4 cut(s) 155, 342, 458, 1163
MaeIII GTNAC 3 cut(s) 132, 543, 863
MalI GATC 5 cut(s) 113, 335, 533, 923, 1194
MbiI CCGCTC 1 cut(s) 1217
MboI GATC 5 cut(s) 111, 333, 531, 921, 1192
MboII GAAGA 9 cut(s) 179, 299, 473, 533, 637, 679, 962, 1016, 1095
MluCI AATT 6 cut(s) 296, 350, 600, 726, 738, 1089
MlyI GAGTC 2 cut(s) 488, 1256
MmeI TCCRAC 1 cut(s) 703
MnlI CCTC 9 cut(s) 189, 313, 484, 586, 692, 769, 802, 819, 1219
MroXI GAANNNNTTC 1 cut(s) 1077
MseI TTAA 9 cut(s) 216, 228, 366, 446, 783, 798, 815, 860, 884
MslI CAYNNNNRTG 1 cut(s) 763
MspCI CTTAAG 2 cut(s) 365, 859
MvnI CGCG 2 cut(s) 66, 939
MwoI GCNNNNNNNGC 7 cut(s) 23, 197, 211, 280, 799, 1214, 1227
NdeII GATC 5 cut(s) 111, 333, 531, 921, 1192
NlaIII CATG 5 cut(s) 204, 693, 912, 961, 1147
NlaIV GGNNCC 2 cut(s) 262, 1051
NspI RCATGY 1 cut(s) 912
NspV TTCGAA 1 cut(s) 1081
OliI CACNNNNGTG 1 cut(s) 763
PdmI GAANNNNTTC 1 cut(s) 1077
PfeI GAWTC 3 cut(s) 338, 595, 1078
PkrI GCNGC 4 cut(s) 65, 308, 311, 792
PleI GAGTC 2 cut(s) 488, 1255
PpsI GAGTC 2 cut(s) 488, 1255
PpuMI RGGWCCY 1 cut(s) 778
PshAI GACNNNNGTC 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 778
PspN4I GGNNCC 2 cut(s) 262, 1051
PspPI GGNCC 3 cut(s) 778, 838, 1186
PspPPI RGGWCCY 1 cut(s) 778
PstI CTGCAG 1 cut(s) 795
RsaI GTAC 4 cut(s) 324, 404, 967, 1051
RsaNI GTAC 4 cut(s) 323, 403, 966, 1050
RseI CAYNNNNRTG 1 cut(s) 763
SalI GTCGAC 1 cut(s) 565
SaqAI TTAA 9 cut(s) 216, 228, 366, 446, 783, 798, 815, 860, 884
SatI GCNGC 4 cut(s) 64, 307, 310, 791
Sau3AI GATC 5 cut(s) 111, 333, 531, 921, 1192
Sau96I GGNCC 3 cut(s) 778, 838, 1186
SchI GAGTC 2 cut(s) 488, 1256
SfaNI GCATC 4 cut(s) 151, 211, 550, 962
SfcI CTRYAG 1 cut(s) 791
SfuI TTCGAA 1 cut(s) 1081
SinI GGWCC 2 cut(s) 778, 838
SmiMI CAYNNNNRTG 1 cut(s) 763
SmlI CTYRAG 3 cut(s) 365, 803, 859
SmoI CTYRAG 3 cut(s) 365, 803, 859
Sse9I AATT 6 cut(s) 296, 350, 600, 726, 738, 1089
SsiI CCGC 5 cut(s) 61, 64, 191, 1215, 1230
SspI AATATT 1 cut(s) 1182
SspMI CTAG 4 cut(s) 155, 342, 458, 1163
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 3 cut(s) 336, 566, 1081
TaqII GACCGA 1 cut(s) 630
TasI AATT 6 cut(s) 296, 350, 600, 726, 738, 1089
TatI WGTACW 1 cut(s) 402
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 3 cut(s) 338, 595, 1078
Tru1I TTAA 9 cut(s) 216, 228, 366, 446, 783, 798, 815, 860, 884
Tru9I TTAA 9 cut(s) 216, 228, 366, 446, 783, 798, 815, 860, 884
TscAI CASTG 1 cut(s) 1060
TseI GCWGC 3 cut(s) 306, 309, 790
TspDTI ATGAA 5 cut(s) 246, 363, 429, 918, 1017
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 1060
Vha464I CTTAAG 2 cut(s) 365, 859
VpaK11BI GGWCC 2 cut(s) 778, 838
XapI RAATTY 2 cut(s) 296, 350
XbaI TCTAGA 2 cut(s) 457, 1162
XceI RCATGY 1 cut(s) 912
XmiI GTMKAC 1 cut(s) 566
XmnI GAANNNNTTC 1 cut(s) 1077
XspI CTAG 4 cut(s) 155, 342, 458, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.