AT2G28305
NAC Family

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
12081023 .. 12084678
3656 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28305.3

Sequence Viewer

Length: 642 bp
ATGGAGATAGAATCAAAGTTCAAGAGAATATGTGTGTTTTGTGGAAGTAGTGCTGGTAATAAAGTCAGTTACAAAGATGCTGCTATCGAACTCGGAACCGAACTGGTATCGAGAAATATCGATCTTGTCTATGGTGGAGGGAGCATTGGTTTAATGGGTTTGATTTCTCAAGCTGTTTTCAATGGAGGTCGCCATGTCATTGGGGTTATCCCCAAGACACTAATGCCAAGAGAGATAACAGGAGAGACAGTGGGAGAAGTGAAGGCAGTAGCAGACATGCACCAAAGGAAAGCTGAAATGGCTAAGCACTCTGATGCTTTTATCGCTTTACCTGGTGGGTATGGGACACTTGAAGAGCTTCTTGAAGTTATCACTTGGGCACAGCTAGGCATCCATGATAAACCAGTGGGACTGTTGAATGTGGAAGGATACTACAATTCATTGTTATCATTCATAGACAAAGCAGTGGAAGAAGGTTTCATTTCACCAACTGCTCGTCATATCATTGTATCTGCTCCTTCTGCTAAAGAACTTGTCAAGAAACTTGAGGATTATGTACCAAGGCATGAGAAGGTAGCCTCAAAGAAAAGCTGGGAGATGGAGCAAATAGGGCTAAGTCCCACTTGTGAAATCTCAAGATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

213

Amino Acids

23.2

Weight (kDa)

6.09

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 15 - 140 7.1e-13 SLOG cluster4 family
Lysine_decarbox PF03641 52 - 182 8.7e-50 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010650)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 558
AgsI TTSAA 5 cut(s) 22, 181, 353, 365, 418
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 5 cut(s) 173, 293, 358, 385, 591
AluI AGCT 5 cut(s) 173, 293, 358, 385, 591
Alw26I GTCTC 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 477
BaeGI GKGCMC 1 cut(s) 382
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 592
BciT130I CCWGG 1 cut(s) 333
BciVI GTATCC 1 cut(s) 422
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 1 cut(s) 386
BfuI GTATCC 1 cut(s) 422
BisI GCNGC 1 cut(s) 81
BlpI GCTNAGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 3 cut(s) 67, 304, 399
Bpu1102I GCTNAGC 1 cut(s) 303
BpuEI CTTGAG 3 cut(s) 153, 566, 619
Bsa29I ATCGAT 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 560
BsaXI ACNNNNNCTCC 4 cut(s) 133, 163, 234, 264
Bse1I ACTGG 2 cut(s) 108, 404
BseBI CCWGG 1 cut(s) 333
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 560
BseGI GGATG 1 cut(s) 390
BseNI ACTGG 2 cut(s) 108, 404
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 591
BshVI ATCGAT 1 cut(s) 120
BslFI GGGAC 3 cut(s) 358, 423, 603
BsmAI GTCTC 1 cut(s) 239
BsmFI GGGAC 3 cut(s) 358, 423, 603
Bsp1286I GDGCHC 1 cut(s) 382
Bsp143I GATC 1 cut(s) 121
Bsp1720I GCTNAGC 1 cut(s) 303
BspDI ATCGAT 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 97
BspQI GCTCTTC 1 cut(s) 348
BsrI ACTGG 2 cut(s) 108, 404
BssECI CCNNGG 1 cut(s) 560
BssMI GATC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 560
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 250, 414
Bst6I CTCTTC 1 cut(s) 348
BstDEI CTNAG 2 cut(s) 303, 614
BstF5I GGATG 1 cut(s) 390
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 4 cut(s) 299, 323, 521, 610
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 331
BstSLI GKGCMC 1 cut(s) 382
BstV1I GCAGC 1 cut(s) 67
BstXI CCANNNNNNTGG 1 cut(s) 200
Bsu15I ATCGAT 1 cut(s) 120
BsuI GTATCC 1 cut(s) 422
BsuTUI ATCGAT 1 cut(s) 120
BtsCI GGATG 1 cut(s) 390
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 3 cut(s) 255, 411, 471
ClaI ATCGAT 1 cut(s) 120
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 1 cut(s) 557
CviAII CATG 4 cut(s) 194, 277, 395, 566
CviJI RGCY 8 cut(s) 173, 293, 302, 358, 385, 578, 591, 613
CviKI_1 RGCY 8 cut(s) 173, 293, 302, 358, 385, 578, 591, 613
CviQI GTAC 1 cut(s) 557
DdeI CTNAG 2 cut(s) 303, 614
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 560
EcoRII CCWGG 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 560
ErhI CCWWGG 1 cut(s) 560
FaeI CATG 4 cut(s) 197, 280, 398, 569
FalI AAGNNNNNCTT 4 cut(s) 345, 377, 607, 639
FaqI GGGAC 3 cut(s) 358, 423, 603
FatI CATG 4 cut(s) 193, 276, 394, 565
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 386
GluI GCNGC 1 cut(s) 81
GsaI CCCAGC 1 cut(s) 595
Hin1II CATG 4 cut(s) 197, 280, 398, 569
HinfI GANTC 1 cut(s) 11
HphI GGTGA 1 cut(s) 477
Hpy188I TCNGA 2 cut(s) 95, 313
Hpy188III TCNNGA 5 cut(s) 22, 111, 362, 538, 636
HpyAV CCTTC 5 cut(s) 256, 419, 467, 528, 565
HpyCH4III ACNGT 2 cut(s) 250, 414
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 323, 521, 610
HpyF3I CTNAG 2 cut(s) 303, 614
Hsp92II CATG 4 cut(s) 197, 280, 398, 569
Kzo9I GATC 1 cut(s) 121
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 3 cut(s) 141, 520, 601
LpnPI CCDG 7 cut(s) 39, 89, 225, 318, 345, 417, 577
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 3 cut(s) 67, 304, 399
MabI ACCWGGT 1 cut(s) 331
MaeI CTAG 1 cut(s) 386
MaeIII GTNAC 1 cut(s) 68
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 2 cut(s) 365, 482
MhlI GDGCHC 1 cut(s) 382
MluCI AATT 1 cut(s) 436
MnlI CCTC 4 cut(s) 131, 179, 541, 589
MroXI GAANNNNTTC 1 cut(s) 357
MseI TTAA 1 cut(s) 152
MslI CAYNNNNRTG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
MwoI GCNNNNNNNGC 4 cut(s) 299, 323, 521, 610
NdeII GATC 1 cut(s) 121
NlaIII CATG 4 cut(s) 197, 280, 398, 569
NlaIV GGNNCC 1 cut(s) 97
NspI RCATGY 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 357
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 82
Psp6I CCWGG 1 cut(s) 331
PspFI CCCAGC 1 cut(s) 591
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 97
RsaI GTAC 1 cut(s) 558
RsaNI GTAC 1 cut(s) 557
RseI CAYNNNNRTG 1 cut(s) 312
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 382
SetI ASST 9 cut(s) 175, 190, 295, 334, 360, 387, 478, 576, 593
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 3 cut(s) 67, 304, 399
SmiMI CAYNNNNRTG 1 cut(s) 312
SmlI CTYRAG 3 cut(s) 168, 545, 634
SmoI CTYRAG 3 cut(s) 168, 545, 634
Sse9I AATT 1 cut(s) 436
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 2 cut(s) 250, 414
TaqI TCGA 3 cut(s) 87, 110, 120
TasI AATT 1 cut(s) 436
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TscAI CASTG 3 cut(s) 255, 411, 471
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 3 cut(s) 429, 442, 469
TspRI CASTG 3 cut(s) 255, 411, 471
XceI RCATGY 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 357
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.