FvH4_3g03400
NAC Family

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
1838900 .. 1842240
3341 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03400.t2

Sequence Viewer

Length: 651 bp
ATGGAGATGAAAATGATGCAATCCAGATTCAAGAGGATTTGTGTGTTCTGTGGGAGTAGTTTGGGAAAGAAGAGCGGTTACCAGGAGGCTGCTATCGAGCTTGGGGAAGAATTGGTTTCTAAGGATATTGATTTGGTTTATGGAGGAGGGAGTATTGGCTTGATGGGTTTGATTTCCCAAGCTGTTCATGATGGTGGAAGACATGTCCTTGGAGTTATCCCCAAGACTCTCATGCCTAAAGAGCTTACTGGTGAAACAGTGGGAGAAGTGAAAGAAGTACGAGACATGCACTCAAGGAAAGCAGAAATGGCTAAGCACTCTGATGCCTTCATTGCCTTACCTGGTGGATATGGAACACTTGAAGAGCTGCTAGAAGTGATTGCATGGGCGCAGCTTGGCATTCATGATAAACCAGTTGGATTGTTGAATGTTGACGGGTACTACGACTCGTTATTGTTGTTCATCGACATGGCTGTGGGAGAAGGTTTCATCAGTCCAGATGCGCGTCACATAATTGTTTCTGCTCCTACTGCCAAGGAGTTGGTGAAGAAAATGGAGGAATATGTCCCGCTCCATGAGAGAGTTGCTTCCAAGCTATGCTGGGAAAAGGAGCAGTTGGGCAACTCCCCATTGTGTGATATTTCAAGGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

217

Amino Acids

23.69

Weight (kDa)

5.53

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 19 - 143 1.9e-11 SLOG cluster4 family
Lysine_decarbox PF03641 55 - 185 6.9e-48 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010650)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 75, 571
AccII CGCG 1 cut(s) 505
AciI CCGC 2 cut(s) 75, 569
AfaI GTAC 2 cut(s) 279, 440
AflIII ACRYGT 1 cut(s) 202
AgsI TTSAA 4 cut(s) 31, 362, 427, 645
AjnI CCWGG 2 cut(s) 81, 340
AluBI AGCT 6 cut(s) 100, 182, 244, 367, 394, 595
AluI AGCT 6 cut(s) 100, 182, 244, 367, 394, 595
Alw26I GTCTC 1 cut(s) 276
ApeKI GCWGC 3 cut(s) 89, 367, 391
AspLEI GCGC 2 cut(s) 391, 505
AsuHPI GGTGA 2 cut(s) 263, 556
BarI GAAGNNNNNNTAC 2 cut(s) 62, 94
BbsI GAAGAC 1 cut(s) 205
BbvI GCAGC 3 cut(s) 76, 354, 403
BccI CCATC 2 cut(s) 157, 185
BciT130I CCWGG 2 cut(s) 83, 342
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 1 cut(s) 371
BisI GCNGC 3 cut(s) 90, 368, 392
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 3 cut(s) 91, 369, 393
Bme1390I CCNGG 2 cut(s) 83, 342
BmrFI CCNGG 2 cut(s) 83, 342
BmsI GCATC 3 cut(s) 6, 313, 490
BpiI GAAGAC 1 cut(s) 205
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 277
BsaJI CCNNGG 2 cut(s) 208, 534
Bse1I ACTGG 2 cut(s) 253, 413
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 2 cut(s) 83, 342
BseDI CCNNGG 2 cut(s) 208, 534
BseMI GCAATG 1 cut(s) 330
BseNI ACTGG 2 cut(s) 253, 413
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 3 cut(s) 76, 354, 403
BseYI CCCAGC 1 cut(s) 600
Bsh1236I CGCG 1 cut(s) 505
BslFI GGGAC 1 cut(s) 551
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 551
BsmI GAATGC 1 cut(s) 399
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 2 cut(s) 75, 569
BspFNI CGCG 1 cut(s) 505
BspHI TCATGA 2 cut(s) 187, 403
BspQI GCTCTTC 2 cut(s) 65, 357
BsrBI CCGCTC 2 cut(s) 75, 571
BsrDI GCAATG 1 cut(s) 330
BsrI ACTGG 2 cut(s) 253, 413
BssECI CCNNGG 2 cut(s) 208, 534
BssT1I CCWWGG 2 cut(s) 208, 534
Bst2UI CCWGG 2 cut(s) 83, 342
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 2 cut(s) 65, 357
BstDEI CTNAG 2 cut(s) 120, 312
BstEII GGTNACC 1 cut(s) 77
BstFNI CGCG 1 cut(s) 505
BstHHI GCGC 2 cut(s) 391, 505
BstMAI GTCTC 1 cut(s) 276
BstMWI GCNNNNNNNGC 4 cut(s) 241, 308, 332, 530
BstNI CCWGG 2 cut(s) 83, 342
BstNSI RCATGY 2 cut(s) 206, 289
BstPI GGTNACC 1 cut(s) 77
BstSCI CCNGG 2 cut(s) 81, 340
BstUI CGCG 1 cut(s) 505
BstV1I GCAGC 3 cut(s) 76, 354, 403
BstV2I GAAGAC 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 541
BtsIMutI CAGTG 1 cut(s) 264
CciI TCATGA 2 cut(s) 187, 403
CfoI GCGC 2 cut(s) 391, 505
CseI GACGC 1 cut(s) 494
CsiI ACCWGGT 1 cut(s) 340
Csp6I GTAC 2 cut(s) 278, 439
CviAII CATG 8 cut(s) 188, 203, 232, 286, 384, 404, 469, 575
CviQI GTAC 2 cut(s) 278, 439
DdeI CTNAG 2 cut(s) 120, 312
Eam1104I CTCTTC 2 cut(s) 65, 357
EarI CTCTTC 2 cut(s) 65, 357
Eco130I CCWWGG 2 cut(s) 208, 534
Eco91I GGTNACC 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 81, 340
EcoT14I CCWWGG 2 cut(s) 208, 534
ErhI CCWWGG 2 cut(s) 208, 534
FaeI CATG 8 cut(s) 191, 206, 235, 289, 387, 407, 472, 578
FaqI GGGAC 1 cut(s) 551
FatI CATG 8 cut(s) 187, 202, 231, 285, 383, 403, 468, 574
FauI CCCGC 1 cut(s) 576
Fnu4HI GCNGC 3 cut(s) 90, 368, 392
Fsp4HI GCNGC 3 cut(s) 90, 368, 392
FspBI CTAG 1 cut(s) 371
GlaI GCGC 2 cut(s) 390, 504
GluI GCNGC 3 cut(s) 90, 368, 392
GsaI CCCAGC 1 cut(s) 604
HgaI GACGC 1 cut(s) 494
HhaI GCGC 2 cut(s) 391, 505
Hin1II CATG 8 cut(s) 191, 206, 235, 289, 387, 407, 472, 578
Hin6I GCGC 2 cut(s) 389, 503
HinP1I GCGC 2 cut(s) 389, 503
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 3 cut(s) 27, 226, 446
HphI GGTGA 2 cut(s) 263, 556
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 5 cut(s) 24, 31, 188, 404, 497
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 2 cut(s) 337, 476
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 3 cut(s) 19, 289, 383
HpyF10VI GCNNNNNNNGC 4 cut(s) 241, 308, 332, 530
HpyF3I CTNAG 2 cut(s) 120, 312
Hsp92II CATG 8 cut(s) 191, 206, 235, 289, 387, 407, 472, 578
HspAI GCGC 2 cut(s) 389, 503
LguI GCTCTTC 2 cut(s) 65, 357
LmnI GCTCC 3 cut(s) 529, 576, 610
LpnPI CCDG 9 cut(s) 37, 68, 95, 234, 327, 354, 426, 510, 586
Lsp1109I GCAGC 3 cut(s) 76, 354, 403
LweI GCATC 3 cut(s) 6, 313, 490
MabI ACCWGGT 1 cut(s) 340
MaeI CTAG 1 cut(s) 371
MaeIII GTNAC 2 cut(s) 77, 506
MbiI CCGCTC 2 cut(s) 75, 571
MboII GAAGA 5 cut(s) 82, 119, 210, 374, 559
MluCI AATT 2 cut(s) 110, 513
MlyI GAGTC 2 cut(s) 220, 440
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 5 cut(s) 27, 79, 137, 140, 550
MslI CAYNNNNRTG 4 cut(s) 192, 321, 467, 473
MspR9I CCNGG 2 cut(s) 83, 342
Mva1269I GAATGC 1 cut(s) 399
MvaI CCWGG 2 cut(s) 83, 342
MvnI CGCG 1 cut(s) 505
MwoI GCNNNNNNNGC 4 cut(s) 241, 308, 332, 530
NlaIII CATG 8 cut(s) 191, 206, 235, 289, 387, 407, 472, 578
NmuCI GTSAC 1 cut(s) 506
NspI RCATGY 2 cut(s) 206, 289
PagI TCATGA 2 cut(s) 187, 403
PciI ACATGT 1 cut(s) 202
PciSI GCTCTTC 2 cut(s) 65, 357
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PctI GAATGC 1 cut(s) 399
PfeI GAWTC 1 cut(s) 27
PkrI GCNGC 3 cut(s) 91, 369, 393
PleI GAGTC 2 cut(s) 220, 440
PpsI GAGTC 2 cut(s) 220, 440
PscI ACATGT 1 cut(s) 202
Psp6I CCWGG 2 cut(s) 81, 340
PspEI GGTNACC 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 600
PspGI CCWGG 2 cut(s) 81, 340
RsaI GTAC 2 cut(s) 279, 440
RsaNI GTAC 2 cut(s) 278, 439
RseI CAYNNNNRTG 4 cut(s) 192, 321, 467, 473
SapI GCTCTTC 2 cut(s) 65, 357
SatI GCNGC 3 cut(s) 90, 368, 392
SchI GAGTC 2 cut(s) 220, 440
ScrFI CCNGG 2 cut(s) 83, 342
SetI ASST 9 cut(s) 102, 184, 246, 343, 369, 396, 487, 597, 650
SexAI ACCWGGT 1 cut(s) 340
SfaNI GCATC 3 cut(s) 6, 313, 490
SmiMI CAYNNNNRTG 4 cut(s) 192, 321, 467, 473
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
Sse9I AATT 2 cut(s) 110, 513
SsiI CCGC 2 cut(s) 75, 569
SspMI CTAG 1 cut(s) 371
StyD4I CCNGG 2 cut(s) 81, 340
StyI CCWWGG 2 cut(s) 208, 534
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 2 cut(s) 96, 465
TasI AATT 2 cut(s) 110, 513
TfiI GAWTC 1 cut(s) 27
TscAI CASTG 1 cut(s) 264
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 3 cut(s) 89, 367, 391
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 6 cut(s) 23, 176, 319, 392, 451, 478
TspRI CASTG 1 cut(s) 264
XceI RCATGY 2 cut(s) 206, 289
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.