FvH4_3g31870
NAC Family

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
26829787 .. 26833252
3466 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31870.t1

Sequence Viewer

Length: 597 bp
ATGGAGATGGAAATGATGCAATCCAGATTCAAGAGGATTTGTGTGTTCTGTGGGAGTAGTCCGGGAAAGAAGAGCAGTTACCAGGATGCAGCTATCGAGCTTGGGCAAGAATTGGTTTCAAAGGATATTGATTTGGTTTATGGAGGAGGGAGTATTGGCTTGATGGGTTTGATATCCCAAGCTGTTTATGATGGTGGAAGACATGTCATTGGAGTTATCCCCAAGACCCTCATGCCTAGAGAGATTACTGGTGAAACAGTGGGAGAAGTGAAAGCAGTAGCAGACATGCACTCAAGGAAAGCAGAAATGGCTAAGCACTCTGATGCCTTCATTGCCTTACCCGGTGGATATGGGACACTTGAAGAGCTTCTTGAAGTGATAACATGGGCTCAGCTTGGCATTCATGATAAACCGGTCGGATTGTTGAATGTGGATGGCTACTACAACTTCTTATTGTCGTTCATCGACACTGCTGTGGAAGAAGGTTTCATTAGTCCAGATGCGCGTCACATAATTGTTTCTGCTCCTACTGCCAAGGAGTTGGTGAAGAAAATGGAGAATTTAGACTCAGACGCTCCGAACGAGTGTGTATCATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

199

Amino Acids

21.47

Weight (kDa)

4.93

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 18 - 127 4.3e-13 SLOG cluster4 family
Lysine_decarbox PF03641 55 - 185 1e-49 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010650)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 505
AcsI RAATTY 1 cut(s) 559
AflIII ACRYGT 1 cut(s) 202
AgeI ACCGGT 1 cut(s) 412
AgsI TTSAA 5 cut(s) 31, 120, 362, 374, 427
AjnI CCWGG 1 cut(s) 81
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 5 cut(s) 92, 100, 182, 367, 394
AluI AGCT 5 cut(s) 92, 100, 182, 367, 394
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 559
AsiGI ACCGGT 1 cut(s) 412
Asp700I GAANNNNTTC 1 cut(s) 366
AspLEI GCGC 1 cut(s) 505
AsuC2I CCSGG 2 cut(s) 63, 342
AsuHPI GGTGA 2 cut(s) 263, 556
BanII GRGCYC 1 cut(s) 391
BarI GAAGNNNNNNTAC 2 cut(s) 62, 94
BbsI GAAGAC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 101
BccI CCATC 3 cut(s) 157, 185, 428
BciT130I CCWGG 1 cut(s) 83
BcnI CCSGG 2 cut(s) 63, 342
BfaI CTAG 1 cut(s) 237
BisI GCNGC 1 cut(s) 90
BlpI GCTNAGC 2 cut(s) 312, 390
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 3 cut(s) 63, 83, 342
BmrFI CCNGG 3 cut(s) 63, 83, 342
BmsI GCATC 4 cut(s) 6, 76, 313, 490
BpiI GAAGAC 1 cut(s) 205
Bpu1102I GCTNAGC 2 cut(s) 312, 390
BpuEI CTTGAG 1 cut(s) 277
BpuMI CCSGG 2 cut(s) 63, 342
BsaJI CCNNGG 1 cut(s) 534
BsaWI WCCGGW 1 cut(s) 412
Bse118I RCCGGY 1 cut(s) 412
Bse1I ACTGG 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 2 cut(s) 91, 439
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 2 cut(s) 404, 582
BseNI ACTGG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 505
Bsh1285I CGRYCG 1 cut(s) 417
BshTI ACCGGT 1 cut(s) 412
BsiEI CGRYCG 1 cut(s) 417
BsiSI CCGG 3 cut(s) 62, 342, 413
BslFI GGGAC 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 367
BsmI GAATGC 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 391
Bsp1720I GCTNAGC 2 cut(s) 312, 390
BspCNI CTCAG 2 cut(s) 403, 581
BspFNI CGCG 1 cut(s) 505
BspHI TCATGA 1 cut(s) 403
BspQI GCTCTTC 2 cut(s) 65, 357
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 412
BsrI ACTGG 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 534
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 2 cut(s) 65, 357
BstDEI CTNAG 3 cut(s) 312, 390, 568
BstF5I GGATG 2 cut(s) 91, 439
BstFNI CGCG 1 cut(s) 505
BstHHI GCGC 1 cut(s) 505
BstMCI CGRYCG 1 cut(s) 417
BstMWI GCNNNNNNNGC 3 cut(s) 308, 332, 530
BstNI CCWGG 1 cut(s) 83
BstNSI RCATGY 2 cut(s) 206, 289
BstSCI CCNGG 3 cut(s) 61, 81, 340
BstUI CGCG 1 cut(s) 505
BstV1I GCAGC 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 205
BstXI CCANNNNNNTGG 1 cut(s) 541
BtsCI GGATG 2 cut(s) 91, 439
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 2 cut(s) 264, 468
CciI TCATGA 1 cut(s) 403
CfoI GCGC 1 cut(s) 505
Cfr10I RCCGGY 1 cut(s) 412
CseI GACGC 2 cut(s) 494, 581
CspAI ACCGGT 1 cut(s) 412
CviAII CATG 5 cut(s) 203, 232, 286, 384, 404
CviJI RGCY 9 cut(s) 92, 100, 159, 182, 311, 367, 389, 394, 438
CviKI_1 RGCY 9 cut(s) 92, 100, 159, 182, 311, 367, 389, 394, 438
DdeI CTNAG 3 cut(s) 312, 390, 568
Eam1104I CTCTTC 2 cut(s) 65, 357
EarI CTCTTC 2 cut(s) 65, 357
Eco130I CCWWGG 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 391
Eco32I GATATC 1 cut(s) 174
EcoRII CCWGG 1 cut(s) 81
EcoRV GATATC 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 5 cut(s) 206, 235, 289, 387, 407
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 1 cut(s) 367
FatI CATG 5 cut(s) 202, 231, 285, 383, 403
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 2 cut(s) 98, 446
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 237
GlaI GCGC 1 cut(s) 504
GluI GCNGC 1 cut(s) 90
HapII CCGG 3 cut(s) 62, 342, 413
HgaI GACGC 2 cut(s) 494, 581
HhaI GCGC 1 cut(s) 505
Hin1II CATG 5 cut(s) 206, 235, 289, 387, 407
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HinfI GANTC 2 cut(s) 27, 566
HpaII CCGG 3 cut(s) 62, 342, 413
HphI GGTGA 2 cut(s) 263, 556
Hpy188I TCNGA 4 cut(s) 322, 419, 571, 579
Hpy188III TCNNGA 5 cut(s) 24, 31, 371, 404, 497
HpyAV CCTTC 2 cut(s) 337, 476
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 3 cut(s) 19, 89, 289
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 332, 530
HpyF3I CTNAG 3 cut(s) 312, 390, 568
Hsp92II CATG 5 cut(s) 206, 235, 289, 387, 407
HspAI GCGC 1 cut(s) 503
LguI GCTCTTC 2 cut(s) 65, 357
LmnI GCTCC 2 cut(s) 529, 580
LpnPI CCDG 8 cut(s) 37, 68, 75, 95, 234, 355, 426, 510
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 4 cut(s) 6, 76, 313, 490
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 2 cut(s) 77, 506
MboII GAAGA 5 cut(s) 82, 210, 374, 491, 559
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 3 cut(s) 110, 513, 559
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 4 cut(s) 27, 137, 140, 239
MroXI GAANNNNTTC 1 cut(s) 366
MslI CAYNNNNRTG 2 cut(s) 321, 473
MspI CCGG 3 cut(s) 62, 342, 413
MspR9I CCNGG 3 cut(s) 63, 83, 342
Mva1269I GAATGC 1 cut(s) 399
MvaI CCWGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 505
MwoI GCNNNNNNNGC 3 cut(s) 308, 332, 530
NciI CCSGG 2 cut(s) 63, 342
NlaIII CATG 5 cut(s) 206, 235, 289, 387, 407
NmuCI GTSAC 1 cut(s) 506
NspI RCATGY 2 cut(s) 206, 289
OliI CACNNNNGTG 1 cut(s) 473
PagI TCATGA 1 cut(s) 403
PciI ACATGT 1 cut(s) 202
PciSI GCTCTTC 2 cut(s) 65, 357
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PctI GAATGC 1 cut(s) 399
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 1 cut(s) 27
PfoI TCCNGGA 1 cut(s) 61
PinAI ACCGGT 1 cut(s) 412
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
PscI ACATGT 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
RseI CAYNNNNRTG 2 cut(s) 321, 473
SapI GCTCTTC 2 cut(s) 65, 357
SatI GCNGC 1 cut(s) 90
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 3 cut(s) 63, 83, 342
SduI GDGCHC 1 cut(s) 391
SetI ASST 6 cut(s) 94, 102, 184, 369, 396, 487
SfaNI GCATC 4 cut(s) 6, 76, 313, 490
SmiMI CAYNNNNRTG 2 cut(s) 321, 473
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
Sse9I AATT 3 cut(s) 110, 513, 559
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 3 cut(s) 61, 81, 340
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 2 cut(s) 96, 465
TasI AATT 3 cut(s) 110, 513, 559
TfiI GAWTC 1 cut(s) 27
TscAI CASTG 2 cut(s) 264, 475
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 4 cut(s) 319, 392, 451, 478
TspRI CASTG 2 cut(s) 264, 475
XapI RAATTY 1 cut(s) 559
XceI RCATGY 2 cut(s) 206, 289
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.