pycom11g11460
NAC Family

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010650
Physical Location & Seq
Reverse (-)
10096464 .. 10102293
5830 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g11460.4

Sequence Viewer

Length: 810 bp
ATGGTCAAAGCGCATATTGGTTTATTACAAATTAGCGTTAAATATATTTTATACCTTTCAGATTTAAGCAAACAACATCACTTCCAAATTCTCAACCTGTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGGAAAAAGAAGAGACAGATTAAGAGAAACATGGAGAAGGAAATGAAGCTATCAAAATTCAAGAGGATTTGTGTGTTCTGTGGAAGTAGTCCAGGAAACAAAAGCAGTTATAAAGAAGCAGCTATTGAGCTGGGAGAAGAACTGGTTTCAAAGAATATTGATTTGGTATATGGAGGAGGGAGTGTTGGACTGATGGGGCTGATTTCCCAAGCTGTTTATGATGGTGGTAGACATGTCATTGGAGTTATTCCCAAGACACTCATGCCTAGAGAGATAACTGGAGACACTGTGGGGGAAGTGAAGGCAGTAGCGGACATGCACCAAAGGAAGGCAGAGATGGCAAAGCACTCCGATGCCTTTATTGCCTTACCTGGTGGCTATGGAACTCTTGAAGAGCTTCTTGAAGTGATAACATGGGCTCAACTGGGCATTCATGATAAACCGGTTGGTTTGCTGAACGTGGATGGGTACTATAACTCCTTGTTGTCATTTATTGACAAGGCAGTAGAGGAAGGTTTCATTAGTCCAACAGCACGCCACATAATTGTTTCTGCTCCTACTGCCAAGGAGTTAGTGAAGAAAATGGAGGAATATTTTCCACGCCATGAAAGAGTTGCTTCAAAGCTAAGCTGGGAAATTGAGCAGTTAGGCTATCCCCCAATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lysine_decarbox

Protein Analysis

270

Amino Acids

30.39

Weight (kDa)

8.83

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010650)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28305 AT2G28305 AT2G28305
fragaria_vesca FvH4_3g03400 FvH4_3g03400 FvH4_3g31870 FvH4_3g31870 FvH4_3g31870 FvH4_3g31870
malus_domestica MD03G1120500.v1.1 MD11G1138900.v1.1
prunus_persica Prupe.6G103900_v2.0.a1
pyrus_communis pycom11g11460
rosa_chinensis RchiOBHm_Chr5g0058621
rosa_multiflora Rmu_sc0000367.1_g000164
rosa_roxburghii Rroxscaffold_1G00021850
rosa_rugosa Rorug05G0316500
rosa_samantha Rh5AG382500 Rh5DG409500
rosa_wichuraiana Rw5G036020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 252
AccI GTMKAC 1 cut(s) 370
AciI CCGC 1 cut(s) 452
AcsI RAATTY 2 cut(s) 87, 197
AfaI GTAC 1 cut(s) 611
AfiI CCNNNNNNNGG 1 cut(s) 469
AflIII ACRYGT 1 cut(s) 373
AgeI ACCGGT 1 cut(s) 583
AgsI TTSAA 5 cut(s) 202, 291, 533, 545, 762
AjnI CCWGG 2 cut(s) 232, 511
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AluBI AGCT 7 cut(s) 190, 263, 271, 353, 538, 766, 771
AluI AGCT 7 cut(s) 190, 263, 271, 353, 538, 766, 771
Alw26I GTCTC 2 cut(s) 148, 417
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 2 cut(s) 87, 197
AsiGI ACCGGT 1 cut(s) 583
Asp700I GAANNNNTTC 2 cut(s) 537, 735
AspLEI GCGC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 562
BbvI GCAGC 1 cut(s) 272
BccI CCATC 4 cut(s) 328, 356, 472, 599
BciT130I CCWGG 2 cut(s) 234, 513
BcoDI GTCTC 2 cut(s) 148, 417
BfaI CTAG 1 cut(s) 408
BisI GCNGC 1 cut(s) 261
BlpI GCTNAGC 1 cut(s) 767
BlsI GCNGC 1 cut(s) 262
Bme1390I CCNGG 2 cut(s) 234, 513
BmrFI CCNGG 2 cut(s) 234, 513
BmrI ACTGGG 1 cut(s) 575
BmsI GCATC 1 cut(s) 484
BmuI ACTGGG 1 cut(s) 575
BpmI CTGGAG 1 cut(s) 441
Bpu1102I GCTNAGC 1 cut(s) 767
BsaJI CCNNGG 1 cut(s) 705
BsaWI WCCGGW 1 cut(s) 583
BsaXI ACNNNNNCTCC 6 cut(s) 309, 339, 414, 444, 602, 632
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse118I RCCGGY 1 cut(s) 583
Bse1I ACTGG 3 cut(s) 288, 424, 570
BseBI CCWGG 2 cut(s) 234, 513
BseDI CCNNGG 1 cut(s) 705
BseGI GGATG 1 cut(s) 610
BseLI CCNNNNNNNGG 1 cut(s) 469
BseNI ACTGG 3 cut(s) 288, 424, 570
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 1 cut(s) 272
BseYI CCCAGC 2 cut(s) 271, 771
BshTI ACCGGT 1 cut(s) 583
BsiSI CCGG 1 cut(s) 584
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 2 cut(s) 148, 417
BsmI GAATGC 1 cut(s) 570
Bsp1286I GDGCHC 1 cut(s) 562
Bsp1720I GCTNAGC 1 cut(s) 767
BspACI CCGC 1 cut(s) 452
BspHI TCATGA 1 cut(s) 574
BspQI GCTCTTC 1 cut(s) 528
BsrFI RCCGGY 1 cut(s) 583
BsrI ACTGG 3 cut(s) 288, 424, 570
BssAI RCCGGY 1 cut(s) 583
BssECI CCNNGG 1 cut(s) 705
BssT1I CCWWGG 1 cut(s) 705
Bst2UI CCWGG 2 cut(s) 234, 513
Bst4CI ACNGT 1 cut(s) 430
Bst6I CTCTTC 2 cut(s) 146, 528
BstC8I GCNNGC 1 cut(s) 676
BstDEI CTNAG 1 cut(s) 767
BstF5I GGATG 1 cut(s) 610
BstHHI GCGC 1 cut(s) 13
BstMAI GTCTC 2 cut(s) 148, 417
BstMWI GCNNNNNNNGC 3 cut(s) 479, 503, 701
BstNI CCWGG 2 cut(s) 234, 513
BstNSI RCATGY 2 cut(s) 377, 460
BstSCI CCNGG 2 cut(s) 232, 511
BstV1I GCAGC 1 cut(s) 272
BtsCI GGATG 1 cut(s) 610
BtsIMutI CAGTG 1 cut(s) 426
Cac8I GCNNGC 1 cut(s) 676
CciI TCATGA 1 cut(s) 574
CfoI GCGC 1 cut(s) 13
Cfr10I RCCGGY 1 cut(s) 583
CsiI ACCWGGT 1 cut(s) 511
Csp6I GTAC 1 cut(s) 610
CspAI ACCGGT 1 cut(s) 583
CviAII CATG 7 cut(s) 172, 374, 403, 457, 555, 575, 746
CviQI GTAC 1 cut(s) 610
DdeI CTNAG 1 cut(s) 767
Eam1104I CTCTTC 2 cut(s) 146, 528
EarI CTCTTC 2 cut(s) 146, 528
Eco130I CCWWGG 1 cut(s) 705
Eco24I GRGCYC 1 cut(s) 562
EcoRII CCWGG 2 cut(s) 232, 511
EcoT14I CCWWGG 1 cut(s) 705
EcoT38I GRGCYC 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 705
FaeI CATG 7 cut(s) 175, 377, 406, 460, 558, 578, 749
FalI AAGNNNNNCTT 4 cut(s) 525, 557, 742, 774
FatI CATG 7 cut(s) 171, 373, 402, 456, 554, 574, 745
FblI GTMKAC 1 cut(s) 370
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 1 cut(s) 617
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 1 cut(s) 408
GlaI GCGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 261
GsaI CCCAGC 2 cut(s) 275, 775
GsuI CTGGAG 1 cut(s) 441
HapII CCGG 1 cut(s) 584
HhaI GCGC 1 cut(s) 13
Hin1II CATG 7 cut(s) 175, 377, 406, 460, 558, 578, 749
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HpaII CCGG 1 cut(s) 584
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 2 cut(s) 61, 493
Hpy188III TCNNGA 4 cut(s) 202, 530, 542, 575
Hpy8I GTNNAC 1 cut(s) 371
HpyAV CCTTC 4 cut(s) 172, 436, 463, 647
HpyCH4III ACNGT 1 cut(s) 430
HpyCH4IV ACGT 1 cut(s) 600
HpyCH4V TGCA 1 cut(s) 460
HpyF10VI GCNNNNNNNGC 3 cut(s) 479, 503, 701
HpyF3I CTNAG 1 cut(s) 767
HpySE526I ACGT 1 cut(s) 600
Hsp92II CATG 7 cut(s) 175, 377, 406, 460, 558, 578, 749
HspAI GCGC 1 cut(s) 11
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 1 cut(s) 700
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 1 cut(s) 484
MabI ACCWGGT 1 cut(s) 511
MaeI CTAG 1 cut(s) 408
MaeII ACGT 1 cut(s) 600
MboII GAAGA 4 cut(s) 163, 290, 545, 730
MhlI GDGCHC 1 cut(s) 562
MluCI AATT 6 cut(s) 30, 87, 197, 684, 777, 801
MmeI TCCRAC 2 cut(s) 307, 692
MnlI CCTC 6 cut(s) 135, 198, 308, 311, 643, 721
MroXI GAANNNNTTC 2 cut(s) 537, 735
MseI TTAA 3 cut(s) 39, 65, 162
MslI CAYNNNNRTG 1 cut(s) 492
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 2 cut(s) 234, 513
Mva1269I GAATGC 1 cut(s) 570
MvaI CCWGG 2 cut(s) 234, 513
MwoI GCNNNNNNNGC 3 cut(s) 479, 503, 701
NlaIII CATG 7 cut(s) 175, 377, 406, 460, 558, 578, 749
NspI RCATGY 2 cut(s) 377, 460
PagI TCATGA 1 cut(s) 574
PciI ACATGT 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 528
PctI GAATGC 1 cut(s) 570
PdmI GAANNNNTTC 2 cut(s) 537, 735
PfoI TCCNGGA 1 cut(s) 232
PinAI ACCGGT 1 cut(s) 583
PkrI GCNGC 1 cut(s) 262
PscI ACATGT 1 cut(s) 373
PsiI TTATAA 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 232, 511
PspFI CCCAGC 2 cut(s) 271, 771
PspGI CCWGG 2 cut(s) 232, 511
RsaI GTAC 1 cut(s) 611
RsaNI GTAC 1 cut(s) 610
RseI CAYNNNNRTG 1 cut(s) 492
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 3 cut(s) 39, 65, 162
SatI GCNGC 1 cut(s) 261
ScrFI CCNGG 2 cut(s) 234, 513
SduI GDGCHC 1 cut(s) 562
SexAI ACCWGGT 1 cut(s) 511
SfaNI GCATC 1 cut(s) 484
SmiMI CAYNNNNRTG 1 cut(s) 492
Sse9I AATT 6 cut(s) 30, 87, 197, 684, 777, 801
SsiI CCGC 1 cut(s) 452
SspI AATATT 2 cut(s) 298, 734
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 2 cut(s) 232, 511
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 1 cut(s) 430
TaiI ACGT 1 cut(s) 603
TasI AATT 6 cut(s) 30, 87, 197, 684, 777, 801
Tru1I TTAA 3 cut(s) 39, 65, 162
Tru9I TTAA 3 cut(s) 39, 65, 162
TscAI CASTG 1 cut(s) 433
TseI GCWGC 1 cut(s) 260
TspDTI ATGAA 4 cut(s) 200, 563, 649, 762
TspRI CASTG 1 cut(s) 433
XapI RAATTY 2 cut(s) 87, 197
XceI RCATGY 2 cut(s) 377, 460
XmiI GTMKAC 1 cut(s) 370
XmnI GAANNNNTTC 2 cut(s) 537, 735
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.