MD03G1120500.v1.1
NAC Family

Cytokinin-activating enzyme working in the direct activation pathway. Phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
11147559 .. 11153926
6368 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1120500.v1.1.491

Sequence Viewer

Length: 651 bp
ATGGAGAAGGAAATGAAGCAATCAAAATTCAAGAGGATTTGTGTGTTCTGTGGAAGTAGTCCAGGAAAGAAAAGCAGTTATAAGGAAGCTGCCATTGAGCTGGGAGAAGAATTGGTTTCAAAGAATATTGATTTAGTATATGGAGGAGGGAGTGTTGGACTGATGGGGCTGATTTCCCAAGCTGTTTATGATGGTGGTAGACATGTCATTGGAGTTATTCCCAAGACACTCATGCCTAGAGAGATAACTGGAGAAACTGTGGGGGAAGTGAAAGCAGTAGCAGACATGCACCAAAGGAAGGCAGAGATGGCAAAGCACTCCGATGCCTTTATTGCCTTACCCGGTGGCTATGGAACTCTTGAAGAGCTTCTTGAAGTGATAACATGGGCTCAACTGGGCATTCATGATAAACCGGTAGGTTTGCTGAATGTGGATGGGTACTACAACTCCTTGCTGTCATTTATTGATAAGGCAGTAGAGGAAGGTTTCATTAGTCCAACAGCCCGCCACATAATTGTTTCTGCTCCTACTGCCAAGGAGTTAGTGAAGAAAATGGAGGAATATTTTCCACGCCATGAAAGAGTTGCTTCAAAGCTAAGCTGGGAAATTGAGCAGTTAGGCTATCCCACAATTTGTGACATATCAAGGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

217

Amino Acids

23.79

Weight (kDa)

6.1

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LDcluster4 PF18306 18 - 143 1.8e-13 SLOG cluster4 family
Lysine_decarbox PF03641 55 - 185 1.1e-50 Possible lysine decarboxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010650)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AccI GTMKAC 1 cut(s) 199
AciI CCGC 1 cut(s) 505
AcsI RAATTY 1 cut(s) 26
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 298
AflIII ACRYGT 1 cut(s) 202
AgeI ACCGGT 1 cut(s) 412
AgsI TTSAA 5 cut(s) 31, 120, 362, 374, 591
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 6 cut(s) 89, 100, 182, 367, 595, 600
AluI AGCT 6 cut(s) 89, 100, 182, 367, 595, 600
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 26
AsiGI ACCGGT 1 cut(s) 412
Asp700I GAANNNNTTC 2 cut(s) 366, 564
AsuC2I CCSGG 1 cut(s) 342
BanII GRGCYC 1 cut(s) 391
BbvI GCAGC 1 cut(s) 76
BccI CCATC 4 cut(s) 157, 185, 301, 428
BciT130I CCWGG 1 cut(s) 63
BcnI CCSGG 1 cut(s) 342
BfaI CTAG 1 cut(s) 237
BisI GCNGC 1 cut(s) 90
BlpI GCTNAGC 1 cut(s) 596
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 2 cut(s) 63, 342
BmrFI CCNGG 2 cut(s) 63, 342
BmrI ACTGGG 1 cut(s) 404
BmsI GCATC 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 404
BpmI CTGGAG 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 596
BpuMI CCSGG 1 cut(s) 342
BsaJI CCNNGG 1 cut(s) 534
BsaWI WCCGGW 1 cut(s) 412
BsaXI ACNNNNNCTCC 6 cut(s) 138, 168, 243, 273, 431, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse118I RCCGGY 1 cut(s) 412
Bse1I ACTGG 2 cut(s) 253, 399
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 1 cut(s) 298
BseNI ACTGG 2 cut(s) 253, 399
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 76
BseYI CCCAGC 2 cut(s) 100, 600
BshTI ACCGGT 1 cut(s) 412
BsiSI CCGG 2 cut(s) 342, 413
BslI CCNNNNNNNGG 1 cut(s) 298
BsmI GAATGC 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 391
Bsp1720I GCTNAGC 1 cut(s) 596
BspACI CCGC 1 cut(s) 505
BspHI TCATGA 1 cut(s) 403
BspQI GCTCTTC 1 cut(s) 357
BsrFI RCCGGY 1 cut(s) 412
BsrI ACTGG 2 cut(s) 253, 399
BssAI RCCGGY 1 cut(s) 412
BssECI CCNNGG 1 cut(s) 534
BssT1I CCWWGG 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 505
BstDEI CTNAG 1 cut(s) 596
BstF5I GGATG 1 cut(s) 439
BstMWI GCNNNNNNNGC 3 cut(s) 308, 332, 530
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 2 cut(s) 206, 289
BstSCI CCNGG 2 cut(s) 61, 340
BstV1I GCAGC 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 439
Cac8I GCNNGC 1 cut(s) 505
CciI TCATGA 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 412
Csp6I GTAC 1 cut(s) 439
CspAI ACCGGT 1 cut(s) 412
CviAII CATG 6 cut(s) 203, 232, 286, 384, 404, 575
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 1 cut(s) 596
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 534
Eco24I GRGCYC 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 6 cut(s) 206, 235, 289, 387, 407, 578
FalI AAGNNNNNCTT 4 cut(s) 354, 386, 571, 603
FatI CATG 6 cut(s) 202, 231, 285, 383, 403, 574
FauI CCCGC 1 cut(s) 512
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 1 cut(s) 446
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 237
GluI GCNGC 1 cut(s) 90
GsaI CCCAGC 2 cut(s) 104, 604
GsuI CTGGAG 1 cut(s) 270
HapII CCGG 2 cut(s) 342, 413
Hin1II CATG 6 cut(s) 206, 235, 289, 387, 407, 578
HpaII CCGG 2 cut(s) 342, 413
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 4 cut(s) 31, 359, 371, 404
Hpy8I GTNNAC 1 cut(s) 200
HpyAV CCTTC 2 cut(s) 292, 476
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 332, 530
HpyF3I CTNAG 1 cut(s) 596
Hsp92II CATG 6 cut(s) 206, 235, 289, 387, 407, 578
LguI GCTCTTC 1 cut(s) 357
LmnI GCTCC 1 cut(s) 529
LpnPI CCDG 8 cut(s) 48, 75, 86, 234, 355, 380, 426, 586
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 313
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 635
MboII GAAGA 3 cut(s) 119, 374, 559
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 5 cut(s) 26, 110, 513, 606, 630
MmeI TCCRAC 2 cut(s) 136, 521
MnlI CCTC 5 cut(s) 27, 137, 140, 472, 550
MroXI GAANNNNTTC 2 cut(s) 366, 564
MslI CAYNNNNRTG 1 cut(s) 321
MspI CCGG 2 cut(s) 342, 413
MspR9I CCNGG 2 cut(s) 63, 342
Mva1269I GAATGC 1 cut(s) 399
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 3 cut(s) 308, 332, 530
NciI CCSGG 1 cut(s) 342
NlaIII CATG 6 cut(s) 206, 235, 289, 387, 407, 578
NmuCI GTSAC 1 cut(s) 635
NspI RCATGY 2 cut(s) 206, 289
PagI TCATGA 1 cut(s) 403
PciI ACATGT 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 357
PctI GAATGC 1 cut(s) 399
PdmI GAANNNNTTC 2 cut(s) 366, 564
PfoI TCCNGGA 1 cut(s) 61
PinAI ACCGGT 1 cut(s) 412
PkrI GCNGC 1 cut(s) 91
PscI ACATGT 1 cut(s) 202
PsiI TTATAA 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 61
PspFI CCCAGC 2 cut(s) 100, 600
PspGI CCWGG 1 cut(s) 61
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
RseI CAYNNNNRTG 1 cut(s) 321
SapI GCTCTTC 1 cut(s) 357
SatI GCNGC 1 cut(s) 90
ScrFI CCNGG 2 cut(s) 63, 342
SduI GDGCHC 1 cut(s) 391
SetI ASST 9 cut(s) 91, 102, 184, 369, 421, 487, 597, 602, 650
SfaNI GCATC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 321
Sse9I AATT 5 cut(s) 26, 110, 513, 606, 630
SsiI CCGC 1 cut(s) 505
SspI AATATT 2 cut(s) 127, 563
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 2 cut(s) 61, 340
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 1 cut(s) 259
TasI AATT 5 cut(s) 26, 110, 513, 606, 630
TseFI GTSAC 1 cut(s) 635
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 4 cut(s) 29, 392, 478, 591
XapI RAATTY 1 cut(s) 26
XceI RCATGY 2 cut(s) 206, 289
XmiI GTMKAC 1 cut(s) 199
XmnI GAANNNNTTC 2 cut(s) 366, 564
XspI CTAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.