AT2G30080

Transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014136
Physical Location & Seq
Reverse (-)
12838620 .. 12840252
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30080.1

Sequence Viewer

Length: 1026 bp
ATGGCTTCTTGCGTCACCGGAACAGAGGCAGCAATCAGAGCAGCGGCATGTAGAGACGGCGAAGAAGCCTCTCATCTAAAGATAGTCGCCGTCTTCGCCATCTTTCTCACAAGCGTTTTCGGAGTTTGGGGACCAGTTTTACTCGCTAAATACTTTCATGGTAAACCTCTGTACGATAAAGCAATTCTTGTGATAAAGTGTTTCGCCGCCGGCGTGATTCTCTCGACGTCTTTAGTCCACGTTTTACCGGAAGCGTTTGAGTCACTCGCTGATTGCCAAGTGTCGTCACGTCATCCATGGAAAGATTTTCCGTTTGCTGGTTTAGTTACGATGATCGGAGCTATAACGGCTTTGTTGGTTGATTTAACGGCGAGTGAACATATGGGACACGGTGGTGGTGGTGGTGGTGACGGAGGGATGGAGTATATGCCGGTGGGTAAGGCGGTTGGAGGGTTAGAAATGAAAGAAGGAAAGTGTGGGGCTGATTTGGAAATACAAGAAAATAGTGAGGAGGAAATTGTGAAGATGAAACAAAGATTAGTGTCACAAGTTCTTGAAATAGGGATTATATTTCATTCGGTGATAATTGGAGTAACAATGGGAATGTCACAAAATAAGTGTACCATTAGACCTTTGATTGCTGCGCTTTCTTTTCATCAGATTTTTGAAGGTTTGGGTCTTGGTGGTTGCATTGCTCAGGCTGGGTTTAAGGCAGGGACAGTGGTGTATATGTGCTTAATGTTCGCGGTAACAACGCCACTCGGGATTGTACTAGGGATGGTGATATTTGCAGCGACCGGGTACGATGATCAGAACCCGAACGCATTGATAATGGAGGGTTTATTGGGATCATTCTCTTCAGGTATTCTAATATACATGGCCTTGGTTGACCTAATTGCATTGGATTTCTTCCATAACAAGATGCTGACGACTTGCGGTGAATCGGGTTCTCGCCTCAAGAAGCTTTGTTTTGTGGCTTTGGTTTTAGGTTCTGCCTCTATGTCACTACTTGCTCTTTGGGCTTAG

Protein Analysis

341

Amino Acids

36.02

Weight (kDa)

5.71

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 25 - 338 1.2e-78 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014136)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30080
fragaria_vesca FvH4_3g39100
malus_domestica MD03G1064200.v1.1 MD11G1068000.v1.1
prunus_persica Prupe.6G053500_v2.0.a1
pyrus_communis pycom03g05170
rosa_chinensis RchiOBHm_Chr5g0070461
rosa_laevigata RLG00000036134
rosa_multiflora Rmu_co8511571.1_g000001 Rmu_sc0007961.1_g000008
rosa_roxburghii Rroxscaffold_1G00010750
rosa_rugosa Rorug05G0406100
rosa_samantha Rh5AG461300 Rh5BG479600 Rh5CG503800 Rh5DG491700
rosa_wichuraiana Rw5G043000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 230
AccII CGCG 1 cut(s) 746
AciI CCGC 5 cut(s) 44, 207, 443, 746, 936
AclWI GGATC 1 cut(s) 856
AcuI CTGAAG 1 cut(s) 843
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 4 cut(s) 173, 622, 771, 803
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 2 cut(s) 557, 668
AjiI CACGTC 1 cut(s) 290
AleI CACNNNNGTG 1 cut(s) 393
AluBI AGCT 2 cut(s) 341, 964
AluI AGCT 2 cut(s) 341, 964
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 1 cut(s) 856
Ama87I CYCGRG 1 cut(s) 761
AoxI GGCC 1 cut(s) 879
ApeKI GCWGC 4 cut(s) 29, 41, 641, 791
AspLEI GCGC 1 cut(s) 646
AspS9I GGNCC 1 cut(s) 131
AsuC2I CCSGG 1 cut(s) 799
AsuHPI GGTGA 5 cut(s) 7, 419, 592, 793, 950
AvaI CYCGRG 1 cut(s) 761
AvaII GGWCC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 85
BbvI GCAGC 4 cut(s) 41, 53, 628, 803
BccI CCATC 3 cut(s) 107, 412, 772
BceAI ACGGC 4 cut(s) 73, 74, 363, 384
BclI TGATCA 1 cut(s) 808
BcnI CCSGG 1 cut(s) 799
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 1 cut(s) 773
BisI GCNGC 6 cut(s) 30, 42, 45, 207, 642, 792
BlsI GCNGC 6 cut(s) 31, 43, 46, 208, 643, 793
Bme1390I CCNGG 1 cut(s) 799
Bme18I GGWCC 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 761
BmgBI CACGTC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 799
BmsI GCATC 1 cut(s) 912
BpiI GAAGAC 1 cut(s) 85
Bpu10I CCTNAGC 1 cut(s) 696
BpuEI CTTGAG 1 cut(s) 941
BpuMI CCSGG 1 cut(s) 799
BsaHI GRCGYC 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 296, 882
BsaWI WCCGGW 2 cut(s) 17, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse118I RCCGGY 2 cut(s) 209, 430
Bse1I ACTGG 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 690
BseDI CCNNGG 2 cut(s) 296, 882
BseGI GGATG 3 cut(s) 292, 423, 783
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 1 cut(s) 710
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 524
BseXI GCAGC 4 cut(s) 41, 53, 628, 803
BseYI CCCAGC 1 cut(s) 701
Bsh1236I CGCG 1 cut(s) 746
Bsh1285I CGRYCG 1 cut(s) 798
BshFI GGCC 1 cut(s) 881
BsiEI CGRYCG 1 cut(s) 798
BsiHKCI CYCGRG 1 cut(s) 761
BsiSI CCGG 5 cut(s) 18, 210, 248, 431, 798
BslFI GGGAC 3 cut(s) 144, 399, 730
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 48
BsmBI CGTCTC 1 cut(s) 48
BsmFI GGGAC 3 cut(s) 144, 399, 730
BsnI GGCC 1 cut(s) 881
BsoBI CYCGRG 1 cut(s) 761
Bsp143I GATC 3 cut(s) 333, 808, 848
Bsp19I CCATGG 1 cut(s) 296
BspACI CCGC 5 cut(s) 44, 207, 443, 746, 936
BspANI GGCC 1 cut(s) 881
BspCNI CTCAG 1 cut(s) 709
BspFNI CGCG 1 cut(s) 746
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 1 cut(s) 856
BsrDI GCAATG 1 cut(s) 690
BsrFI RCCGGY 2 cut(s) 209, 430
BsrI ACTGG 1 cut(s) 134
BssAI RCCGGY 2 cut(s) 209, 430
BssECI CCNNGG 2 cut(s) 296, 882
BssMI GATC 3 cut(s) 333, 808, 848
BssNI GRCGYC 1 cut(s) 227
BssT1I CCWWGG 2 cut(s) 296, 882
Bst4CI ACNGT 2 cut(s) 392, 721
Bst6I CTCTTC 1 cut(s) 862
BstACI GRCGYC 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 2 cut(s) 696, 1023
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 3 cut(s) 292, 423, 783
BstFNI CGCG 1 cut(s) 746
BstHHI GCGC 1 cut(s) 646
BstKTI GATC 3 cut(s) 336, 811, 851
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 3 cut(s) 333, 808, 848
BstMCI CGRYCG 1 cut(s) 798
BstMWI GCNNNNNNNGC 4 cut(s) 38, 95, 347, 1019
BstNSI RCATGY 1 cut(s) 51
BstSCI CCNGG 1 cut(s) 797
BstUI CGCG 1 cut(s) 746
BstV1I GCAGC 4 cut(s) 41, 53, 628, 803
BstV2I GAAGAC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 881
BtgI CCRYGG 1 cut(s) 296
BtrI CACGTC 1 cut(s) 290
BtsCI GGATG 3 cut(s) 292, 423, 783
BtsIMutI CAGTG 1 cut(s) 726
Cac8I GCNNGC 1 cut(s) 211
CfoI GCGC 1 cut(s) 646
Cfr10I RCCGGY 2 cut(s) 209, 430
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 4 cut(s) 172, 621, 770, 802
CviAII CATG 4 cut(s) 48, 158, 297, 877
CviQI GTAC 4 cut(s) 172, 621, 770, 802
DdeI CTNAG 2 cut(s) 696, 1023
DpnI GATC 3 cut(s) 335, 810, 850
DpnII GATC 3 cut(s) 333, 808, 848
Eam1104I CTCTTC 1 cut(s) 862
EarI CTCTTC 1 cut(s) 862
Eco130I CCWWGG 2 cut(s) 296, 882
Eco47I GGWCC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 843
Eco88I CYCGRG 1 cut(s) 761
EcoT14I CCWWGG 2 cut(s) 296, 882
ErhI CCWWGG 2 cut(s) 296, 882
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 4 cut(s) 51, 161, 300, 880
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 3 cut(s) 144, 399, 730
FatI CATG 4 cut(s) 47, 157, 296, 876
FauNDI CATATG 1 cut(s) 381
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 6 cut(s) 30, 42, 45, 207, 642, 792
FokI GGATG 3 cut(s) 279, 430, 790
Fsp4HI GCNGC 6 cut(s) 30, 42, 45, 207, 642, 792
FspBI CTAG 1 cut(s) 773
GlaI GCGC 1 cut(s) 645
GluI GCNGC 6 cut(s) 30, 42, 45, 207, 642, 792
GsaI CCCAGC 1 cut(s) 705
HaeIII GGCC 1 cut(s) 881
HapII CCGG 5 cut(s) 18, 210, 248, 431, 798
HhaI GCGC 1 cut(s) 646
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 4 cut(s) 51, 161, 300, 880
Hin6I GCGC 1 cut(s) 644
HinP1I GCGC 1 cut(s) 644
HincII GTYRAC 1 cut(s) 889
HindII GTYRAC 1 cut(s) 889
HindIII AAGCTT 1 cut(s) 962
HinfI GANTC 3 cut(s) 217, 260, 941
HpaII CCGG 5 cut(s) 18, 210, 248, 431, 798
HphI GGTGA 5 cut(s) 7, 419, 592, 793, 950
Hpy166II GTNNAC 5 cut(s) 164, 238, 377, 621, 889
Hpy188I TCNGA 5 cut(s) 38, 122, 338, 660, 813
Hpy188III TCNNGA 4 cut(s) 223, 554, 763, 958
Hpy8I GTNNAC 5 cut(s) 164, 238, 377, 621, 889
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 461, 662
HpyCH4III ACNGT 2 cut(s) 392, 721
HpyCH4IV ACGT 3 cut(s) 227, 240, 289
HpyCH4V TGCA 3 cut(s) 690, 791, 899
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 95, 347, 1019
HpyF3I CTNAG 2 cut(s) 696, 1023
HpySE526I ACGT 3 cut(s) 227, 240, 289
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 4 cut(s) 51, 161, 300, 880
HspAI GCGC 1 cut(s) 644
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 3 cut(s) 333, 808, 848
LmnI GCTCC 1 cut(s) 338
Lsp1109I GCAGC 4 cut(s) 41, 53, 628, 803
LweI GCATC 1 cut(s) 912
MaeI CTAG 1 cut(s) 773
MaeII ACGT 3 cut(s) 227, 240, 289
MalI GATC 3 cut(s) 335, 810, 850
MboI GATC 3 cut(s) 333, 808, 848
MboII GAAGA 5 cut(s) 74, 85, 535, 849, 901
MluCI AATT 4 cut(s) 183, 516, 585, 894
MlyI GAGTC 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 427
MreI CGCCGGCG 1 cut(s) 209
MroNI GCCGGC 1 cut(s) 209
MseI TTAA 3 cut(s) 365, 708, 737
MslI CAYNNNNRTG 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 5 cut(s) 18, 210, 248, 431, 798
MspR9I CCNGG 1 cut(s) 799
MvnI CGCG 1 cut(s) 746
MwoI GCNNNNNNNGC 4 cut(s) 38, 95, 347, 1019
NaeI GCCGGC 1 cut(s) 211
NciI CCSGG 1 cut(s) 799
NcoI CCATGG 1 cut(s) 296
NdeI CATATG 1 cut(s) 381
NdeII GATC 3 cut(s) 333, 808, 848
NgoMIV GCCGGC 1 cut(s) 209
NlaIII CATG 4 cut(s) 51, 161, 300, 880
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 7 cut(s) 13, 261, 285, 407, 543, 606, 1002
NspI RCATGY 1 cut(s) 51
OliI CACNNNNGTG 1 cut(s) 393
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdiI GCCGGC 1 cut(s) 211
PfeI GAWTC 2 cut(s) 217, 941
PkrI GCNGC 6 cut(s) 31, 43, 46, 208, 643, 793
PleI GAGTC 1 cut(s) 268
PpsI GAGTC 1 cut(s) 268
PspFI CCCAGC 1 cut(s) 701
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 131
RsaI GTAC 4 cut(s) 173, 622, 771, 803
RsaNI GTAC 4 cut(s) 172, 621, 770, 802
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 3 cut(s) 365, 708, 737
SatI GCNGC 6 cut(s) 30, 42, 45, 207, 642, 792
Sau3AI GATC 3 cut(s) 333, 808, 848
Sau96I GGNCC 1 cut(s) 131
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 799
SfaNI GCATC 1 cut(s) 912
SgrAI CRCCGGYG 1 cut(s) 209
SinI GGWCC 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 956
SmoI CTYRAG 1 cut(s) 956
Sse9I AATT 4 cut(s) 183, 516, 585, 894
SsiI CCGC 5 cut(s) 44, 207, 443, 746, 936
SspMI CTAG 1 cut(s) 773
StyD4I CCNGG 1 cut(s) 797
StyI CCWWGG 2 cut(s) 296, 882
TaaI ACNGT 2 cut(s) 392, 721
TaiI ACGT 3 cut(s) 230, 243, 292
TaqI TCGA 1 cut(s) 224
TasI AATT 4 cut(s) 183, 516, 585, 894
TatI WGTACW 1 cut(s) 769
TauI GCSGC 2 cut(s) 47, 209
TfiI GAWTC 2 cut(s) 217, 941
Tru1I TTAA 3 cut(s) 365, 708, 737
Tru9I TTAA 3 cut(s) 365, 708, 737
TscAI CASTG 1 cut(s) 726
TseFI GTSAC 7 cut(s) 13, 261, 285, 407, 543, 606, 1002
TseI GCWGC 4 cut(s) 29, 41, 641, 791
Tsp45I GTSAC 7 cut(s) 13, 261, 285, 407, 543, 606, 1002
TspDTI ATGAA 5 cut(s) 146, 476, 542, 563, 644
TspGWI ACGGA 2 cut(s) 300, 426
TspRI CASTG 1 cut(s) 726
VpaK11BI GGWCC 1 cut(s) 131
XceI RCATGY 1 cut(s) 51
XspI CTAG 1 cut(s) 773
ZraI GACGTC 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.