Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014136

Physical Location & Seq

Genomic Coordinates Reverse (-)

33316316 .. 33318787

Gene Structure 2472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g39100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCCGCGTGCGGAGCAGACACCGCCCGAACCCTCGCCTGTCGCGACGGACACGCGGCAGCGCAGCTGAAGCTCATCTCCATCGCCGTTATCTTCATCACCAGCGTCGTCGGCATCACCTCCCCCGTCCTCCTCGCCCGTCACTTCCAAGGCAAACCCGCCTACGACCGCGCCACTCTCTTGATCAAGTGCTTCGCCGCTGGCGTCATCCTCTCCACTTCCCTCGTCCACGTCCTCCCTGACGCCTTCGCCGCCCTCTCTGACTGCCACGTCGCCTCCCGCCATCCCTGGAAAGACTACCCTTTCTCCGGCCTCGTCACCATGATCGGCGCCATCGCTGCCCTCCTCGTCGACCTCACCGCCAGTGCCCACATGGAGAGTCACACGGCTCACTCCCACGGCCAATACGAGGTCCTTCCGGTGGCTACGCAGGAGGAGCCAGATACCAAGAAGCCGTCTATGTCGATCGAGTTGAAAGTTGAGCCCGTGGCTGGTGCAGTTAGCGATAGTGGCGGTGGCCATAGCCACGAGGAGATGGTGATCAGGTTGAAGCAGAGATTGGTGTCGCAGGTGTTAGAGATAGGGATTATATTTCACTCGGTGATAATAGGAGTGACGATGGGGATGTCTCAGAATCAATGCACCATTCGGCCATTGGTGGCTGCACTTGCGTTTCATCAGATTTTTGAGGGGATGGGCCTCGGTGGCTGCATTGCTCAGGCAGGGTTCACCTTTGGAACAACAGCCTACATGTGCTTCATGTTTGCAGTGACGACGCCAATGGGGATTGTGCTGGGGATGATCTTATTCTCGGTGACAGGTTATGACGATAGTAGCCCTAATGCCTTAATCTTGGAGGGTTTGTTAGGATCTTTCTCCTCTGGTATTCTCATTTACATGGCACTTGTCGATCTTATAGCTCTTGATTTCTTCCACAACAAGATGATGACCTCGAACTCATGGTTGAGGAAAACTTCATTCACCGCTCTTGTTCTTGGCTCTATCTCCATGTCCATCCTTGCCCTTTGGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043207 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

345

Amino Acids

36.6

Weight (kDa)

6.25

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	22 - 341	4.5e-73	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30080
fragaria_vesca	FvH4_3g39100
malus_domestica	MD03G1064200.v1.1 MD11G1068000.v1.1
prunus_persica	Prupe.6G053500_v2.0.a1
pyrus_communis	pycom03g05170
rosa_chinensis	RchiOBHm_Chr5g0070461
rosa_laevigata	RLG00000036134
rosa_multiflora	Rmu_co8511571.1_g000001 Rmu_sc0007961.1_g000008
rosa_roxburghii	Rroxscaffold_1G00010750
rosa_rugosa	Rorug05G0406100
rosa_samantha	Rh5AG461300 Rh5BG479600 Rh5CG503800 Rh5DG491700
rosa_wichuraiana	Rw5G043000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	559
AasI	GACNNNNNNGTC	1 cut(s)	269
Acc36I	ACCTGC	1 cut(s)	559
AccB1I	GGYRCC	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	986
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	4 cut(s)	8, 45, 56, 171
AclWI	GGATC	1 cut(s)	877
AcoI	YGGCCR	4 cut(s)	3, 400, 517, 650
AcuI	CTGAAG	1 cut(s)	89
AcyI	GRCGYC	4 cut(s)	204, 243, 330, 776
AdeI	CACNNNGTG	1 cut(s)	601
AfiI	CCNNNNNNNGG	4 cut(s)	308, 409, 421, 491
AflIII	ACRYGT	1 cut(s)	750
AgsI	TTSAA	2 cut(s)	475, 550
AjiI	CACGTC	2 cut(s)	232, 271
AjnI	CCWGG	1 cut(s)	287
AjuI	GAANNNNNNNTTGG	2 cut(s)	542, 574
AluBI	AGCT	3 cut(s)	67, 73, 920
AluI	AGCT	3 cut(s)	67, 73, 920
Alw26I	GTCTC	1 cut(s)	633
AlwI	GGATC	1 cut(s)	877
AoxI	GGCC	7 cut(s)	3, 310, 400, 517, 650, 697, 1029
ApeKI	GCWGC	5 cut(s)	59, 64, 338, 662, 708
AspLEI	GCGC	3 cut(s)	64, 173, 332
AspS9I	GGNCC	3 cut(s)	412, 697, 1029
AsuHPI	GGTGA	9 cut(s)	91, 109, 310, 349, 550, 613, 721, 826, 973
AvaII	GGWCC	1 cut(s)	412
BaeGI	GKGCMC	1 cut(s)	370
BalI	TGGCCA	1 cut(s)	519
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	486
BauI	CACGAG	1 cut(s)	527
BbvI	GCAGC	5 cut(s)	71, 76, 325, 649, 695
BccI	CCATC	7 cut(s)	89, 291, 341, 529, 613, 688, 1022
BceAI	ACGGC	4 cut(s)	71, 402, 415, 439
BciT130I	CCWGG	1 cut(s)	289
BclI	TGATCA	2 cut(s)	183, 540
BcoDI	GTCTC	1 cut(s)	633
BfaI	CTAG	1 cut(s)	1033
BfoI	RGCGCY	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	559
BglI	GCCNNNNNGGC	2 cut(s)	705, 1028
BisI	GCNGC	9 cut(s)	6, 57, 60, 65, 198, 252, 339, 663, 709
BlsI	GCNGC	9 cut(s)	7, 58, 61, 66, 199, 253, 340, 664, 710
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	412
BmgBI	CACGTC	2 cut(s)	232, 271
BmgT120I	GGNCC	3 cut(s)	412, 697, 1029
BmiI	GGNNCC	2 cut(s)	331, 438
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	717
BsaBI	GATNNNNATC	1 cut(s)	539
BsaHI	GRCGYC	4 cut(s)	204, 243, 330, 776
BsaJI	CCNNGG	5 cut(s)	148, 287, 397, 486, 700
BsaWI	WCCGGW	1 cut(s)	418
BsaXI	ACNNNNNCTCC	6 cut(s)	260, 290, 290, 320, 848, 878
Bsc4I	CCNNNNNNNGG	4 cut(s)	308, 409, 421, 491
Bse1I	ACTGG	1 cut(s)	363
Bse3DI	GCAATG	1 cut(s)	711
Bse8I	GATNNNNATC	1 cut(s)	539
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	5 cut(s)	148, 287, 397, 486, 700
BseGI	GGATG	6 cut(s)	207, 283, 630, 699, 804, 1014
BseJI	GATNNNNATC	1 cut(s)	539
BseLI	CCNNNNNNNGG	4 cut(s)	308, 409, 421, 491
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	2 cut(s)	644, 731
BseNI	ACTGG	1 cut(s)	363
BseRI	GAGGAG	5 cut(s)	122, 335, 449, 545, 868
BseSI	GKGCMC	1 cut(s)	370
BseXI	GCAGC	5 cut(s)	71, 76, 325, 649, 695
BseYI	CCCAGC	1 cut(s)	793
BsgI	GTGCAG	2 cut(s)	516, 648
Bsh1236I	CGCG	4 cut(s)	8, 45, 56, 171
Bsh1285I	CGRYCG	2 cut(s)	169, 468
BshFI	GGCC	7 cut(s)	5, 312, 402, 519, 652, 699, 1031
BshNI	GGYRCC	1 cut(s)	329
BsiEI	CGRYCG	2 cut(s)	169, 468
BsiSI	CCGG	2 cut(s)	309, 419
BslI	CCNNNNNNNGG	4 cut(s)	308, 409, 421, 491
BsmAI	GTCTC	1 cut(s)	633
BsnI	GGCC	7 cut(s)	5, 312, 402, 519, 652, 699, 1031
Bsp1286I	GDGCHC	2 cut(s)	370, 486
Bsp143I	GATC	7 cut(s)	183, 324, 465, 540, 801, 869, 910
Bsp68I	TCGCGA	1 cut(s)	45
BspANI	GGCC	7 cut(s)	5, 312, 402, 519, 652, 699, 1031
BspCNI	CTCAG	2 cut(s)	643, 730
BspFNI	CGCG	4 cut(s)	8, 45, 56, 171
BspLI	GGNNCC	2 cut(s)	331, 438
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	1 cut(s)	877
BspT107I	GGYRCC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	986
BsrDI	GCAATG	1 cut(s)	711
BsrI	ACTGG	1 cut(s)	363
BssECI	CCNNGG	5 cut(s)	148, 287, 397, 486, 700
BssMI	GATC	7 cut(s)	183, 324, 465, 540, 801, 869, 910
BssNI	GRCGYC	4 cut(s)	204, 243, 330, 776
BssSI	CACGAG	1 cut(s)	527
BssT1I	CCWWGG	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	289
BstACI	GRCGYC	4 cut(s)	204, 243, 330, 776
BstC8I	GCNNGC	2 cut(s)	10, 202
BstDEI	CTNAG	2 cut(s)	630, 717
BstDSI	CCRYGG	2 cut(s)	397, 486
BstF5I	GGATG	6 cut(s)	207, 283, 630, 699, 804, 1014
BstFNI	CGCG	4 cut(s)	8, 45, 56, 171
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	3 cut(s)	64, 173, 332
BstKTI	GATC	7 cut(s)	186, 327, 468, 543, 804, 872, 913
BstMAI	GTCTC	1 cut(s)	633
BstMBI	GATC	7 cut(s)	183, 324, 465, 540, 801, 869, 910
BstMCI	CGRYCG	2 cut(s)	169, 468
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	754
BstSCI	CCNGG	1 cut(s)	287
BstSLI	GKGCMC	1 cut(s)	370
BstUI	CGCG	4 cut(s)	8, 45, 56, 171
BstV1I	GCAGC	5 cut(s)	71, 76, 325, 649, 695
BstX2I	RGATCY	1 cut(s)	869
BstYI	RGATCY	1 cut(s)	869
BsuRI	GGCC	7 cut(s)	5, 312, 402, 519, 652, 699, 1031
BtgI	CCRYGG	2 cut(s)	397, 486
BtgZI	GCGATG	2 cut(s)	67, 319
BtrI	CACGTC	2 cut(s)	232, 271
BtsCI	GGATG	6 cut(s)	207, 283, 630, 699, 804, 1014
BtsI	GCAGTG	1 cut(s)	774
BtsIMutI	CAGTG	2 cut(s)	370, 774
BtuMI	TCGCGA	1 cut(s)	45
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	2 cut(s)	10, 202
CfoI	GCGC	3 cut(s)	64, 173, 332
Cfr13I	GGNCC	3 cut(s)	412, 697, 1029
CseI	GACGC	4 cut(s)	94, 193, 251, 784
CviAII	CATG	7 cut(s)	322, 373, 751, 760, 898, 960, 1009
DdeI	CTNAG	2 cut(s)	630, 717
DinI	GGCGCC	1 cut(s)	331
DpnI	GATC	7 cut(s)	185, 326, 467, 542, 803, 871, 912
DpnII	GATC	7 cut(s)	183, 324, 465, 540, 801, 869, 910
DraIII	CACNNNGTG	1 cut(s)	601
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	4 cut(s)	3, 400, 517, 650
Eco130I	CCWWGG	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	412
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	486
EgeI	GGCGCC	1 cut(s)	331
EheI	GGCGCC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	7 cut(s)	325, 376, 754, 763, 901, 963, 1012
FatI	CATG	7 cut(s)	321, 372, 750, 759, 897, 959, 1008
FauI	CCCGC	2 cut(s)	166, 287
FbaI	TGATCA	2 cut(s)	183, 540
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	9 cut(s)	6, 57, 60, 65, 198, 252, 339, 663, 709
FokI	GGATG	6 cut(s)	194, 270, 637, 706, 811, 1001
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	9 cut(s)	6, 57, 60, 65, 198, 252, 339, 663, 709
FspBI	CTAG	1 cut(s)	1033
GlaI	GCGC	3 cut(s)	63, 172, 331
GluI	GCNGC	9 cut(s)	6, 57, 60, 65, 198, 252, 339, 663, 709
GsaI	CCCAGC	1 cut(s)	797
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	7 cut(s)	5, 312, 402, 519, 652, 699, 1031
HapII	CCGG	2 cut(s)	309, 419
HgaI	GACGC	4 cut(s)	94, 193, 251, 784
HhaI	GCGC	3 cut(s)	64, 173, 332
Hin1I	GRCGYC	4 cut(s)	204, 243, 330, 776
Hin1II	CATG	7 cut(s)	325, 376, 754, 763, 901, 963, 1012
Hin6I	GCGC	3 cut(s)	62, 171, 330
HinP1I	GCGC	3 cut(s)	62, 171, 330
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	2 cut(s)	379, 634
HpaII	CCGG	2 cut(s)	309, 419
HphI	GGTGA	9 cut(s)	91, 109, 310, 349, 550, 613, 721, 826, 973
Hpy166II	GTNNAC	3 cut(s)	229, 352, 729
Hpy188I	TCNGA	3 cut(s)	262, 633, 681
Hpy188III	TCNNGA	3 cut(s)	44, 181, 923
Hpy8I	GTNNAC	3 cut(s)	229, 352, 729
Hpy99I	CGWCG	6 cut(s)	50, 110, 113, 275, 353, 778
HpyAV	CCTTC	2 cut(s)	256, 425
HpyCH4IV	ACGT	2 cut(s)	231, 270
HpyCH4V	TGCA	5 cut(s)	497, 642, 665, 711, 767
HpyF3I	CTNAG	2 cut(s)	630, 717
HpySE526I	ACGT	2 cut(s)	231, 270
Hsp92I	GRCGYC	4 cut(s)	204, 243, 330, 776
Hsp92II	CATG	7 cut(s)	325, 376, 754, 763, 901, 963, 1012
HspAI	GCGC	3 cut(s)	62, 171, 330
KasI	GGCGCC	1 cut(s)	329
Ksp22I	TGATCA	2 cut(s)	183, 540
Kzo9I	GATC	7 cut(s)	183, 324, 465, 540, 801, 869, 910
LmnI	GCTCC	2 cut(s)	14, 436
Lsp1109I	GCAGC	5 cut(s)	71, 76, 325, 649, 695
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	1033
MaeII	ACGT	2 cut(s)	231, 270
MaeIII	GTNAC	6 cut(s)	140, 316, 380, 613, 769, 814
MalI	GATC	7 cut(s)	185, 326, 467, 542, 803, 871, 912
MbiI	CCGCTC	1 cut(s)	986
MboI	GATC	7 cut(s)	183, 324, 465, 540, 801, 869, 910
MboII	GAAGA	2 cut(s)	85, 922
MflI	RGATCY	1 cut(s)	869
MhlI	GDGCHC	2 cut(s)	370, 486
MlsI	TGGCCA	1 cut(s)	519
MluNI	TGGCCA	1 cut(s)	519
Mly113I	GGCGCC	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	388
Mox20I	TGGCCA	1 cut(s)	519
MscI	TGGCCA	1 cut(s)	519
MseI	TTAA	1 cut(s)	848
MslI	CAYNNNNRTG	1 cut(s)	896
Msp20I	TGGCCA	1 cut(s)	519
MspA1I	CMGCKG	2 cut(s)	67, 200
MspI	CCGG	2 cut(s)	309, 419
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	4 cut(s)	8, 45, 56, 171
NarI	GGCGCC	1 cut(s)	330
NdeII	GATC	7 cut(s)	183, 324, 465, 540, 801, 869, 910
NlaIII	CATG	7 cut(s)	325, 376, 754, 763, 901, 963, 1012
NlaIV	GGNNCC	2 cut(s)	331, 438
NmuCI	GTSAC	6 cut(s)	140, 316, 380, 613, 769, 814
NruI	TCGCGA	1 cut(s)	45
NspI	RCATGY	1 cut(s)	754
PaqCI	CACCTGC	1 cut(s)	559
PciI	ACATGT	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	3 cut(s)	42, 201, 405
PfeI	GAWTC	1 cut(s)	634
PkrI	GCNGC	9 cut(s)	7, 58, 61, 66, 199, 253, 340, 664, 710
Ple19I	CGATCG	1 cut(s)	468
PleI	GAGTC	1 cut(s)	387
PluTI	GGCGCC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	387
PpuMI	RGGWCCY	1 cut(s)	412
PscI	ACATGT	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	287
PspFI	CCCAGC	1 cut(s)	793
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	331, 438
PspPI	GGNCC	3 cut(s)	412, 697, 1029
PspPPI	RGGWCCY	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	869
PvuI	CGATCG	1 cut(s)	468
PvuII	CAGCTG	1 cut(s)	67
RruI	TCGCGA	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	896
SalI	GTCGAC	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	848
SatI	GCNGC	9 cut(s)	6, 57, 60, 65, 198, 252, 339, 663, 709
Sau3AI	GATC	7 cut(s)	183, 324, 465, 540, 801, 869, 910
Sau96I	GGNCC	3 cut(s)	412, 697, 1029
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	2 cut(s)	370, 486
SfaNI	GCATC	1 cut(s)	123
SfoI	GGCGCC	1 cut(s)	331
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	896
SspDI	GGCGCC	1 cut(s)	329
SspMI	CTAG	1 cut(s)	1033
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	148
TaiI	ACGT	2 cut(s)	234, 273
TaqI	TCGA	5 cut(s)	351, 464, 468, 909, 953
TauI	GCSGC	4 cut(s)	8, 59, 200, 254
TfiI	GAWTC	1 cut(s)	634
Tru1I	TTAA	1 cut(s)	848
Tru9I	TTAA	1 cut(s)	848
TscAI	CASTG	2 cut(s)	370, 774
TseFI	GTSAC	6 cut(s)	140, 316, 380, 613, 769, 814
TseI	GCWGC	5 cut(s)	59, 64, 338, 662, 708
Tsp45I	GTSAC	6 cut(s)	140, 316, 380, 613, 769, 814
TspDTI	ATGAA	4 cut(s)	85, 665, 748, 966
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	2 cut(s)	370, 774
VpaK11BI	GGWCC	1 cut(s)	412
XceI	RCATGY	1 cut(s)	754
XcmI	CCANNNNNNNNNTGG	2 cut(s)	370, 652
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	1 cut(s)	1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.