Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8511571.1

Orthogroup ID

OG0014136

Physical Location & Seq

Genomic Coordinates Reverse (-)

1783 .. 3727

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8511571.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

atggccgcgtgcggggccgacacggcccgaaccatcgcttgccgcgacggccacgcggccgcgcagctgaagctcatctccatcgccgtcatcttcatcaccagcgtcgtcggcatcacctcccctgtcctcctcgcccgtcacttccaaggcaagcccgcctacgaccgcgctactctcataatcaagtgcttcgccgccggcgtcatcctctccacttccctcgtccacgtcctccccgatgccttcgccgccctagccgactgccacgtggcctcccgccatccctggaaggactaccccttctccggcctcatcaccatgatcggcgccatcgccgccctcctcgtcgacctcaccgccagcgcccacatggagagccacagcacccacgcccacggccaatacgaggtcctttcggtgagcacacaggaggagctagggaccaagaagtcgtcgccgatcgagttgaaagttgagtccgtggagggtgcagttagcgatagtggcggtggtgatagccatagccatgaggagatgatcattcggctgaagcagagattggtgtcgcaggtgttggagatagggataatatttcactcggtgattataggagtgacgatggggatgtctcagaaccagtgcaccattcggccattggtggctgcgcttgcgtttcatcagattttcgaggggatgggcctcggcggctgcattgctcaggcagggtttacctttggaacaacggcctacatgtgcttcatgtttgcagtgacgaccccaatggggatagtgttggggatgatcttattctcggtgacaggttacgacgacagtagcactaatgccttaatcttggaggggttgttggggtctttctcttcaggtatcctcatttacatggctcttgtggatctcatagctcttgatttcttccacaacaagatgatgagctctaattcatggttgaggaaaacttcattcactgctcttgttcttggctccatttccatgtccatccttgccctttgggcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043207 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

345

Amino Acids

36.69

Weight (kDa)

6.13

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30080
fragaria_vesca	FvH4_3g39100
malus_domestica	MD03G1064200.v1.1 MD11G1068000.v1.1
prunus_persica	Prupe.6G053500_v2.0.a1
pyrus_communis	pycom03g05170
rosa_chinensis	RchiOBHm_Chr5g0070461
rosa_laevigata	RLG00000036134
rosa_multiflora	Rmu_co8511571.1_g000001 Rmu_sc0007961.1_g000008
rosa_roxburghii	Rroxscaffold_1G00010750
rosa_rugosa	Rorug05G0406100
rosa_samantha	Rh5AG461300 Rh5BG479600 Rh5CG503800 Rh5DG491700
rosa_wichuraiana	Rw5G043000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
AasI	GACNNNNNNGTC	1 cut(s)	451
Acc36I	ACCTGC	1 cut(s)	562
AccB1I	GGYRCC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	351
AccII	CGCG	5 cut(s)	8, 45, 56, 62, 171
AclWI	GGATC	1 cut(s)	921
AcoI	YGGCCR	5 cut(s)	3, 49, 57, 400, 653
AcuI	CTGAAG	3 cut(s)	89, 572, 867
AcvI	CACGTG	1 cut(s)	271
AcyI	GRCGYC	2 cut(s)	204, 330
AdeI	CACNNNGTG	1 cut(s)	604
AfiI	CCNNNNNNNGG	4 cut(s)	12, 308, 409, 786
AflIII	ACRYGT	1 cut(s)	753
AgsI	TTSAA	1 cut(s)	472
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	287
AjuI	GAANNNNNNNTTGG	2 cut(s)	545, 577
AluBI	AGCT	5 cut(s)	67, 73, 439, 923, 954
AluI	AGCT	5 cut(s)	67, 73, 439, 923, 954
Alw21I	GWGCWC	3 cut(s)	428, 647, 956
Alw26I	GTCTC	1 cut(s)	636
Alw44I	GTGCAC	1 cut(s)	643
AlwI	GGATC	1 cut(s)	921
ApaLI	GTGCAC	1 cut(s)	643
ApeKI	GCWGC	3 cut(s)	64, 665, 711
AspLEI	GCGC	5 cut(s)	64, 173, 332, 368, 670
AspS9I	GGNCC	6 cut(s)	15, 25, 412, 444, 700, 1032
AsuHPI	GGTGA	8 cut(s)	91, 109, 310, 349, 433, 527, 616, 829
AvaII	GGWCC	2 cut(s)	412, 444
BaeGI	GKGCMC	1 cut(s)	647
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	956
BbrPI	CACGTG	1 cut(s)	271
Bbv12I	GWGCWC	3 cut(s)	428, 647, 956
BbvI	GCAGC	3 cut(s)	76, 652, 698
BccI	CCATC	7 cut(s)	41, 89, 291, 341, 616, 691, 1025
BceAI	ACGGC	5 cut(s)	39, 64, 71, 415, 762
BciT130I	CCWGG	1 cut(s)	289
BciVI	GTATCC	1 cut(s)	899
BclI	TGATCA	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	636
BfaI	CTAG	3 cut(s)	257, 440, 1036
BfoI	RGCGCY	2 cut(s)	333, 369
BfuAI	ACCTGC	1 cut(s)	562
BfuI	GTATCC	1 cut(s)	899
BglI	GCCNNNNNGGC	4 cut(s)	23, 48, 708, 1031
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	2 cut(s)	412, 444
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	6 cut(s)	15, 25, 412, 444, 700, 1032
BmiI	GGNNCC	4 cut(s)	16, 331, 445, 1003
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	2 cut(s)	123, 232
Bpu10I	CCTNAGC	1 cut(s)	720
BsaAI	YACGTR	1 cut(s)	271
BsaHI	GRCGYC	2 cut(s)	204, 330
BsaJI	CCNNGG	5 cut(s)	148, 287, 397, 483, 703
BsaXI	ACNNNNNCTCC	6 cut(s)	260, 290, 290, 320, 851, 881
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 308, 409, 786
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	640
Bse3DI	GCAATG	1 cut(s)	714
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	5 cut(s)	148, 287, 397, 483, 703
BseGI	GGATG	6 cut(s)	207, 283, 633, 702, 807, 1017
BseLI	CCNNNNNNNGG	4 cut(s)	12, 308, 409, 786
BseMI	GCAATG	1 cut(s)	714
BseMII	CTCAG	2 cut(s)	647, 734
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	4 cut(s)	122, 335, 449, 548
BseSI	GKGCMC	1 cut(s)	647
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	3 cut(s)	76, 652, 698
BsgI	GTGCAG	1 cut(s)	513
Bsh1236I	CGCG	5 cut(s)	8, 45, 56, 62, 171
Bsh1285I	CGRYCG	3 cut(s)	60, 169, 465
BshNI	GGYRCC	1 cut(s)	329
BsiEI	CGRYCG	3 cut(s)	60, 169, 465
BsiHKAI	GWGCWC	3 cut(s)	428, 647, 956
BsiSI	CCGG	2 cut(s)	201, 309
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	4 cut(s)	12, 308, 409, 786
BsmAI	GTCTC	1 cut(s)	636
BsmFI	GGGAC	1 cut(s)	457
Bsp1286I	GDGCHC	3 cut(s)	428, 647, 956
Bsp143I	GATC	5 cut(s)	324, 462, 540, 804, 913
BspCNI	CTCAG	2 cut(s)	646, 733
BspFNI	CGCG	5 cut(s)	8, 45, 56, 62, 171
BspLI	GGNNCC	4 cut(s)	16, 331, 445, 1003
BspMI	ACCTGC	1 cut(s)	562
BspPI	GGATC	1 cut(s)	921
BspT107I	GGYRCC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	714
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	640
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	5 cut(s)	148, 287, 397, 483, 703
BssMI	GATC	5 cut(s)	324, 462, 540, 804, 913
BssNI	GRCGYC	2 cut(s)	204, 330
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	1 cut(s)	886
BstACI	GRCGYC	2 cut(s)	204, 330
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	7 cut(s)	10, 40, 155, 159, 202, 364, 672
BstDEI	CTNAG	2 cut(s)	633, 720
BstDSI	CCRYGG	2 cut(s)	397, 483
BstF5I	GGATG	6 cut(s)	207, 283, 633, 702, 807, 1017
BstFNI	CGCG	5 cut(s)	8, 45, 56, 62, 171
BstH2I	RGCGCY	2 cut(s)	333, 369
BstHHI	GCGC	5 cut(s)	64, 173, 332, 368, 670
BstKTI	GATC	5 cut(s)	327, 465, 543, 807, 916
BstMAI	GTCTC	1 cut(s)	636
BstMBI	GATC	5 cut(s)	324, 462, 540, 804, 913
BstMCI	CGRYCG	3 cut(s)	60, 169, 465
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	1 cut(s)	287
BstSLI	GKGCMC	1 cut(s)	647
BstUI	CGCG	5 cut(s)	8, 45, 56, 62, 171
BstV1I	GCAGC	3 cut(s)	76, 652, 698
BstX2I	RGATCY	1 cut(s)	913
BstYI	RGATCY	1 cut(s)	913
BstZI	CGGCCG	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	899
BtgI	CCRYGG	2 cut(s)	397, 483
BtgZI	GCGATG	3 cut(s)	19, 67, 319
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	6 cut(s)	207, 283, 633, 702, 807, 1017
BtsI	GCAGTG	2 cut(s)	777, 984
BtsIMutI	CAGTG	3 cut(s)	647, 777, 984
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	7 cut(s)	10, 40, 155, 159, 202, 364, 672
CciNI	GCGGCCGC	1 cut(s)	57
CfoI	GCGC	5 cut(s)	64, 173, 332, 368, 670
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	6 cut(s)	15, 25, 412, 444, 700, 1032
CseI	GACGC	2 cut(s)	94, 193
CviAII	CATG	8 cut(s)	322, 373, 530, 754, 763, 901, 963, 1012
DdeI	CTNAG	2 cut(s)	633, 720
DinI	GGCGCC	1 cut(s)	331
DpnI	GATC	5 cut(s)	326, 464, 542, 806, 915
DpnII	GATC	5 cut(s)	324, 462, 540, 804, 913
DraIII	CACNNNGTG	1 cut(s)	604
DrdI	GACNNNNNNGTC	1 cut(s)	451
DseDI	GACNNNNNNGTC	1 cut(s)	451
EaeI	YGGCCR	5 cut(s)	3, 49, 57, 400, 653
EagI	CGGCCG	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	886
EarI	CTCTTC	1 cut(s)	886
Ecl136II	GAGCTC	1 cut(s)	954
EclXI	CGGCCG	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	956
Eco47I	GGWCC	2 cut(s)	412, 444
Eco52I	CGGCCG	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	954
Eco57I	CTGAAG	3 cut(s)	89, 572, 867
Eco72I	CACGTG	1 cut(s)	271
EcoICRI	GAGCTC	1 cut(s)	954
EcoO109I	RGGNCCY	1 cut(s)	412
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	956
EgeI	GGCGCC	1 cut(s)	331
EheI	GGCGCC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	8 cut(s)	325, 376, 533, 757, 766, 904, 966, 1015
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	8 cut(s)	321, 372, 529, 753, 762, 900, 962, 1011
FauI	CCCGC	3 cut(s)	5, 166, 287
FbaI	TGATCA	1 cut(s)	540
FblI	GTMKAC	1 cut(s)	351
FokI	GGATG	6 cut(s)	194, 270, 640, 709, 814, 1004
FriOI	GRGCYC	1 cut(s)	956
FspBI	CTAG	3 cut(s)	257, 440, 1036
GlaI	GCGC	5 cut(s)	63, 172, 331, 367, 669
HaeII	RGCGCY	2 cut(s)	333, 369
HapII	CCGG	2 cut(s)	201, 309
HgaI	GACGC	2 cut(s)	94, 193
HhaI	GCGC	5 cut(s)	64, 173, 332, 368, 670
Hin1I	GRCGYC	2 cut(s)	204, 330
Hin1II	CATG	8 cut(s)	325, 376, 533, 757, 766, 904, 966, 1015
Hin6I	GCGC	5 cut(s)	62, 171, 330, 366, 668
HinP1I	GCGC	5 cut(s)	62, 171, 330, 366, 668
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	2 cut(s)	201, 309
HphI	GGTGA	8 cut(s)	91, 109, 310, 349, 433, 527, 616, 829
Hpy166II	GTNNAC	4 cut(s)	229, 352, 645, 732
Hpy188I	TCNGA	2 cut(s)	636, 684
Hpy188III	TCNNGA	1 cut(s)	926
Hpy8I	GTNNAC	4 cut(s)	229, 352, 645, 732
Hpy99I	CGWCG	6 cut(s)	50, 110, 113, 353, 460, 833
HpyAV	CCTTC	3 cut(s)	256, 286, 313
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	2 cut(s)	231, 270
HpyCH4V	TGCA	4 cut(s)	494, 645, 714, 770
HpyF3I	CTNAG	2 cut(s)	633, 720
HpySE526I	ACGT	2 cut(s)	231, 270
Hsp92I	GRCGYC	2 cut(s)	204, 330
Hsp92II	CATG	8 cut(s)	325, 376, 533, 757, 766, 904, 966, 1015
HspAI	GCGC	5 cut(s)	62, 171, 330, 366, 668
KasI	GGCGCC	1 cut(s)	329
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	5 cut(s)	324, 462, 540, 804, 913
LmnI	GCTCC	2 cut(s)	436, 1007
Lsp1109I	GCAGC	3 cut(s)	76, 652, 698
LweI	GCATC	2 cut(s)	123, 232
MaeI	CTAG	3 cut(s)	257, 440, 1036
MaeII	ACGT	2 cut(s)	231, 270
MaeIII	GTNAC	5 cut(s)	140, 616, 772, 817, 824
MalI	GATC	5 cut(s)	326, 464, 542, 806, 915
MboI	GATC	5 cut(s)	324, 462, 540, 804, 913
MboII	GAAGA	3 cut(s)	85, 873, 925
MflI	RGATCY	1 cut(s)	913
MhlI	GDGCHC	3 cut(s)	428, 647, 956
MluCI	AATT	1 cut(s)	958
Mly113I	GGCGCC	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	558
MreI	CGCCGGCG	1 cut(s)	200
MroNI	GCCGGC	1 cut(s)	200
MseI	TTAA	1 cut(s)	851
MslI	CAYNNNNRTG	4 cut(s)	320, 528, 899, 1010
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	2 cut(s)	201, 309
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	5 cut(s)	8, 45, 56, 62, 171
NaeI	GCCGGC	1 cut(s)	202
NarI	GGCGCC	1 cut(s)	330
NdeII	GATC	5 cut(s)	324, 462, 540, 804, 913
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	8 cut(s)	325, 376, 533, 757, 766, 904, 966, 1015
NlaIV	GGNNCC	4 cut(s)	16, 331, 445, 1003
NmeAIII	GCCGAG	1 cut(s)	684
NmuCI	GTSAC	4 cut(s)	140, 616, 772, 817
NotI	GCGGCCGC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	757
PaqCI	CACCTGC	1 cut(s)	562
PciI	ACATGT	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	4 cut(s)	42, 201, 237, 405
PdiI	GCCGGC	1 cut(s)	202
Ple19I	CGATCG	1 cut(s)	465
PleI	GAGTC	1 cut(s)	487
PluTI	GGCGCC	1 cut(s)	333
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	487
Ppu21I	YACGTR	1 cut(s)	271
PpuMI	RGGWCCY	1 cut(s)	412
PscI	ACATGT	1 cut(s)	753
Psp124BI	GAGCTC	1 cut(s)	956
Psp5II	RGGWCCY	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	287
PspCI	CACGTG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	4 cut(s)	16, 331, 445, 1003
PspPI	GGNCC	6 cut(s)	15, 25, 412, 444, 700, 1032
PspPPI	RGGWCCY	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	913
PvuI	CGATCG	1 cut(s)	465
PvuII	CAGCTG	1 cut(s)	67
RseI	CAYNNNNRTG	4 cut(s)	320, 528, 899, 1010
SacI	GAGCTC	1 cut(s)	956
SalI	GTCGAC	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	851
Sau3AI	GATC	5 cut(s)	324, 462, 540, 804, 913
Sau96I	GGNCC	6 cut(s)	15, 25, 412, 444, 700, 1032
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	3 cut(s)	428, 647, 956
SfaNI	GCATC	2 cut(s)	123, 232
SfiI	GGCCNNNNNGGCC	1 cut(s)	23
SfoI	GGCGCC	1 cut(s)	331
SgrAI	CRCCGGYG	1 cut(s)	200
SinI	GGWCC	2 cut(s)	412, 444
SmiMI	CAYNNNNRTG	4 cut(s)	320, 528, 899, 1010
Sse9I	AATT	1 cut(s)	958
SspDI	GGCGCC	1 cut(s)	329
SspI	AATATT	1 cut(s)	594
SspMI	CTAG	3 cut(s)	257, 440, 1036
SstI	GAGCTC	1 cut(s)	956
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	2 cut(s)	234, 273
TaqI	TCGA	3 cut(s)	351, 465, 690
TasI	AATT	1 cut(s)	958
TauI	GCSGC	8 cut(s)	8, 45, 59, 62, 200, 254, 341, 711
Tru1I	TTAA	1 cut(s)	851
Tru9I	TTAA	1 cut(s)	851
TscAI	CASTG	3 cut(s)	647, 777, 991
TseFI	GTSAC	4 cut(s)	140, 616, 772, 817
TseI	GCWGC	3 cut(s)	64, 665, 711
Tsp45I	GTSAC	4 cut(s)	140, 616, 772, 817
TspDTI	ATGAA	5 cut(s)	85, 668, 751, 951, 969
TspGWI	ACGGA	1 cut(s)	472
TspRI	CASTG	3 cut(s)	647, 777, 991
VneI	GTGCAC	1 cut(s)	643
VpaK11BI	GGWCC	2 cut(s)	412, 444
XceI	RCATGY	1 cut(s)	757
XcmI	CCANNNNNNNNNTGG	2 cut(s)	370, 655
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	3 cut(s)	257, 440, 1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.