MD03G1064200.v1.1

Zinc transporter 6

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
5153918 .. 5156520
2603 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1064200.v1.1.491

Sequence Viewer

Length: 1059 bp
ATGGCGTCTTGCGTATCGGACACGGCTCGGTCCCTCTCCTGCCGAGACGGACGCGCCGCCGCGCACCTCAAGCTAATCTCAATCGCCGTCATCTTCGTCACCAGCGTCGTCGGCATATCGTCCCCCGTCCTCCTCTCCCGCTACTTCCAAGGCAAGCCCGCGTACGACAAAGCCACGCTCGTCATCAAGTGCTTCGCCGCTGGCGTCATCCTCTCCACGTCCCTCGTCCACGTCCTCCCCGACGCCTTCCTCGCCCTCTCCGACTGCCGCGTGTCATCCCACCACCCCTGGAAGGACTACCCCTTCTCGGGGCTCGTCACCATGATCGGCGCTTTAATCGCCCTCCTCGTCGACCTCACCGCCACCTCCCACATGGAGTCCCACTCCGCCGTCGGTGGCCACGGTCACGGCGGATACGAGGTGGTGCCTGTGGGGGCGCGGGAGGAATTGGTGGGGAAGAATAGCAATCTGAAGGGTAAGAATAGCAAACTGGCGATGGATGTGGAGGTGGCGGTGGCGGTGGGTGTGGAGAGTAATAGTGGTGGGGGTAGTGAGGAAATATTGATCCGGATGAAGCAGCGGCTGGTTTCGCAGGTGTTGGAAATCGGGATTATTTTCCACTCGGTGATAATTGGGGTGACGATGGGGATGTCGCAGAACCAGTGCACCATCCGGCCGTTGGTCGCTGCGCTGTCGTTTCATCAGATTTTCGAAGGGATGGGACTCGGAGGATGCATTGCTCAGGCAGGATTTAAGTTTGGGACAACAGCCTACATGTGCTTCATGTTTGCAGTGACAACTCCAATGGGGATAGTATTGGGGATGATCTTATTCTCTGTGACAGGTTATGACGATAGTAACCCTAAAGCCCTAATCTTGGAGGGTTTGTTGGGCTCCTTCTCCTCGGGCATACTTATCTACATGGCTCTGGTCGATCTCATTGCTCTCGATTTCTTCCACAACAAGATGATGAGCTCTAACTCATGGCTGCGGAAAACGTCGTTCATCGCTCTTGTTCTTGGCTCTACCTCCATGTCCATCCTTGCCCTTTGGGCATAG

Protein Analysis

353

Amino Acids

37.36

Weight (kDa)

7.67

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 22 - 349 5.6e-72 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014136)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30080
fragaria_vesca FvH4_3g39100
malus_domestica MD03G1064200.v1.1 MD11G1068000.v1.1
prunus_persica Prupe.6G053500_v2.0.a1
pyrus_communis pycom03g05170
rosa_chinensis RchiOBHm_Chr5g0070461
rosa_laevigata RLG00000036134
rosa_multiflora Rmu_co8511571.1_g000001 Rmu_sc0007961.1_g000008
rosa_roxburghii Rroxscaffold_1G00010750
rosa_rugosa Rorug05G0406100
rosa_samantha Rh5AG461300 Rh5BG479600 Rh5CG503800 Rh5DG491700
rosa_wichuraiana Rw5G043000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 583
Acc36I ACCTGC 1 cut(s) 583
AccB1I GGYRCC 1 cut(s) 424
AccI GTMKAC 1 cut(s) 351
AccII CGCG 5 cut(s) 54, 62, 161, 270, 439
AccIII TCCGGA 1 cut(s) 567
AclWI GGATC 1 cut(s) 559
AcoI YGGCCR 2 cut(s) 397, 674
AcuI CTGAAG 1 cut(s) 491
AcyI GRCGYC 3 cut(s) 5, 204, 243
AdeI CACNNNGTG 1 cut(s) 625
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 6 cut(s) 292, 307, 308, 309, 679, 877
AflIII ACRYGT 1 cut(s) 774
AjiI CACGTC 2 cut(s) 219, 232
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 2 cut(s) 73, 975
AluI AGCT 2 cut(s) 73, 975
Alw21I GWGCWC 2 cut(s) 668, 977
Alw26I GTCTC 1 cut(s) 39
Alw44I GTGCAC 1 cut(s) 664
AlwI GGATC 1 cut(s) 559
AlwNI CAGNNNCTG 1 cut(s) 583
Ama87I CYCGRG 2 cut(s) 307, 904
Aor13HI TCCGGA 1 cut(s) 567
AoxI GGCC 2 cut(s) 397, 674
ApaLI GTGCAC 1 cut(s) 664
ApeKI GCWGC 3 cut(s) 577, 686, 988
AspLEI GCGC 5 cut(s) 56, 64, 332, 439, 691
AspS9I GGNCC 1 cut(s) 30
AsuHPI GGTGA 5 cut(s) 91, 310, 349, 637, 649
AsuII TTCGAA 1 cut(s) 711
AvaI CYCGRG 2 cut(s) 307, 904
AvaII GGWCC 1 cut(s) 30
BaeGI GKGCMC 1 cut(s) 668
BalI TGGCCA 1 cut(s) 399
BanI GGYRCC 1 cut(s) 424
BanII GRGCYC 3 cut(s) 315, 896, 977
Bbv12I GWGCWC 2 cut(s) 668, 977
BbvI GCAGC 3 cut(s) 589, 673, 975
BccI CCATC 5 cut(s) 490, 637, 677, 712, 1046
BceAI ACGGC 5 cut(s) 39, 71, 374, 424, 661
BcgI CGANNNNNNTGC 2 cut(s) 923, 957
BciT130I CCWGG 1 cut(s) 289
BciVI GTATCC 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 39
BfoI RGCGCY 1 cut(s) 333
BfuAI ACCTGC 1 cut(s) 583
BfuI GTATCC 1 cut(s) 407
BglI GCCNNNNNGGC 1 cut(s) 1052
BisI GCNGC 8 cut(s) 57, 60, 198, 268, 578, 581, 687, 989
BlsI GCNGC 8 cut(s) 58, 61, 199, 269, 579, 582, 688, 990
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 30
BmeT110I CYCGRG 2 cut(s) 307, 904
BmgBI CACGTC 2 cut(s) 219, 232
BmgT120I GGNCC 1 cut(s) 30
BmiI GGNNCC 3 cut(s) 32, 426, 895
BmrFI CCNGG 1 cut(s) 289
BmsI GCATC 1 cut(s) 722
BplI GAGNNNNNCTC 2 cut(s) 368, 400
Bpu10I CCTNAGC 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 711
BpuEI CTTGAG 1 cut(s) 53
BsaHI GRCGYC 3 cut(s) 5, 204, 243
BsaJI CCNNGG 4 cut(s) 148, 287, 400, 903
BsaWI WCCGGW 1 cut(s) 567
BsaXI ACNNNNNCTCC 2 cut(s) 872, 902
Bsc4I CCNNNNNNNGG 6 cut(s) 292, 307, 308, 309, 679, 877
Bse1I ACTGG 2 cut(s) 495, 661
Bse3DI GCAATG 2 cut(s) 735, 939
BseAI TCCGGA 1 cut(s) 567
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 4 cut(s) 148, 287, 400, 903
BseLI CCNNNNNNNGG 6 cut(s) 292, 307, 308, 309, 679, 877
BseMI GCAATG 2 cut(s) 735, 939
BseMII CTCAG 1 cut(s) 755
BseNI ACTGG 2 cut(s) 495, 661
BseRI GAGGAG 3 cut(s) 122, 335, 892
BseSI GKGCMC 1 cut(s) 668
BseX3I CGGCCG 1 cut(s) 674
BseXI GCAGC 3 cut(s) 589, 673, 975
Bsh1236I CGCG 5 cut(s) 54, 62, 161, 270, 439
Bsh1285I CGRYCG 1 cut(s) 677
BshFI GGCC 2 cut(s) 399, 676
BshNI GGYRCC 1 cut(s) 424
BsiEI CGRYCG 1 cut(s) 677
BsiHKAI GWGCWC 2 cut(s) 668, 977
BsiHKCI CYCGRG 2 cut(s) 307, 904
BsiSI CCGG 2 cut(s) 568, 673
BsiWI CGTACG 1 cut(s) 162
BslFI GGGAC 6 cut(s) 16, 106, 205, 364, 735, 775
BslI CCNNNNNNNGG 6 cut(s) 292, 307, 308, 309, 679, 877
BsmAI GTCTC 1 cut(s) 39
BsmBI CGTCTC 1 cut(s) 39
BsmFI GGGAC 6 cut(s) 16, 106, 205, 364, 735, 775
BsnI GGCC 2 cut(s) 399, 676
BsoBI CYCGRG 2 cut(s) 307, 904
Bsp119I TTCGAA 1 cut(s) 711
Bsp1286I GDGCHC 4 cut(s) 315, 668, 896, 977
Bsp13I TCCGGA 1 cut(s) 567
Bsp143I GATC 4 cut(s) 324, 564, 825, 934
BspANI GGCC 2 cut(s) 399, 676
BspCNI CTCAG 1 cut(s) 754
BspEI TCCGGA 1 cut(s) 567
BspFNI CGCG 5 cut(s) 54, 62, 161, 270, 439
BspLI GGNNCC 3 cut(s) 32, 426, 895
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 1 cut(s) 559
BspT104I TTCGAA 1 cut(s) 711
BspT107I GGYRCC 1 cut(s) 424
BsrDI GCAATG 2 cut(s) 735, 939
BsrI ACTGG 2 cut(s) 495, 661
BssECI CCNNGG 4 cut(s) 148, 287, 400, 903
BssMI GATC 4 cut(s) 324, 564, 825, 934
BssNI GRCGYC 3 cut(s) 5, 204, 243
BssT1I CCWWGG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 404
BstACI GRCGYC 3 cut(s) 5, 204, 243
BstBI TTCGAA 1 cut(s) 711
BstC8I GCNNGC 3 cut(s) 155, 159, 202
BstDEI CTNAG 1 cut(s) 741
BstDSI CCRYGG 1 cut(s) 400
BstFNI CGCG 5 cut(s) 54, 62, 161, 270, 439
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 5 cut(s) 56, 64, 332, 439, 691
BstKTI GATC 4 cut(s) 327, 567, 828, 937
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 4 cut(s) 324, 564, 825, 934
BstMCI CGRYCG 1 cut(s) 677
BstMWI GCNNNNNNNGC 6 cut(s) 70, 111, 251, 338, 589, 1052
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 778
BstSCI CCNGG 1 cut(s) 287
BstSLI GKGCMC 1 cut(s) 668
BstUI CGCG 5 cut(s) 54, 62, 161, 270, 439
BstV1I GCAGC 3 cut(s) 589, 673, 975
BstZI CGGCCG 1 cut(s) 674
BsuI GTATCC 1 cut(s) 407
BsuRI GGCC 2 cut(s) 399, 676
BtgI CCRYGG 1 cut(s) 400
BtgZI GCGATG 2 cut(s) 509, 991
BtrI CACGTC 2 cut(s) 219, 232
BtsI GCAGTG 1 cut(s) 798
BtsIMutI CAGTG 2 cut(s) 668, 798
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 3 cut(s) 155, 159, 202
CaiI CAGNNNCTG 1 cut(s) 583
CfoI GCGC 5 cut(s) 56, 64, 332, 439, 691
Cfr13I GGNCC 1 cut(s) 30
CseI GACGC 4 cut(s) 60, 94, 193, 251
Csp6I GTAC 1 cut(s) 163
CviAII CATG 7 cut(s) 322, 373, 775, 784, 922, 984, 1033
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 741
DpnI GATC 4 cut(s) 326, 566, 827, 936
DpnII GATC 4 cut(s) 324, 564, 825, 934
DraIII CACNNNGTG 1 cut(s) 625
EaeI YGGCCR 2 cut(s) 397, 674
EagI CGGCCG 1 cut(s) 674
EciI GGCGGA 2 cut(s) 376, 426
Ecl136II GAGCTC 1 cut(s) 975
EclXI CGGCCG 1 cut(s) 674
Eco130I CCWWGG 1 cut(s) 148
Eco24I GRGCYC 3 cut(s) 315, 896, 977
Eco47I GGWCC 1 cut(s) 30
Eco52I CGGCCG 1 cut(s) 674
Eco53kI GAGCTC 1 cut(s) 975
Eco57I CTGAAG 1 cut(s) 491
Eco88I CYCGRG 2 cut(s) 307, 904
EcoICRI GAGCTC 1 cut(s) 975
EcoRII CCWGG 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 737
EcoT38I GRGCYC 3 cut(s) 315, 896, 977
ErhI CCWWGG 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 7 cut(s) 325, 376, 778, 787, 925, 987, 1036
FaqI GGGAC 6 cut(s) 16, 106, 205, 364, 735, 775
FatI CATG 7 cut(s) 321, 372, 774, 783, 921, 983, 1032
FauI CCCGC 3 cut(s) 146, 166, 432
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 8 cut(s) 57, 60, 198, 268, 578, 581, 687, 989
FriOI GRGCYC 3 cut(s) 315, 896, 977
Fsp4HI GCNGC 8 cut(s) 57, 60, 198, 268, 578, 581, 687, 989
GlaI GCGC 5 cut(s) 55, 63, 331, 438, 690
GluI GCNGC 8 cut(s) 57, 60, 198, 268, 578, 581, 687, 989
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 2 cut(s) 399, 676
HapII CCGG 2 cut(s) 568, 673
HgaI GACGC 4 cut(s) 60, 94, 193, 251
HhaI GCGC 5 cut(s) 56, 64, 332, 439, 691
Hin1I GRCGYC 3 cut(s) 5, 204, 243
Hin1II CATG 7 cut(s) 325, 376, 778, 787, 925, 987, 1036
Hin6I GCGC 5 cut(s) 54, 62, 330, 437, 689
HinP1I GCGC 5 cut(s) 54, 62, 330, 437, 689
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 2 cut(s) 377, 723
HpaII CCGG 2 cut(s) 568, 673
HphI GGTGA 5 cut(s) 91, 310, 349, 637, 649
Hpy166II GTNNAC 3 cut(s) 229, 352, 666
Hpy188I TCNGA 5 cut(s) 19, 262, 471, 705, 728
Hpy188III TCNNGA 3 cut(s) 568, 607, 947
Hpy8I GTNNAC 3 cut(s) 229, 352, 666
Hpy99I CGWCG 6 cut(s) 110, 113, 245, 353, 395, 1003
HpyAV CCTTC 6 cut(s) 256, 286, 313, 466, 707, 907
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4IV ACGT 3 cut(s) 218, 231, 998
HpyCH4V TGCA 3 cut(s) 666, 735, 791
HpyF10VI GCNNNNNNNGC 6 cut(s) 70, 111, 251, 338, 589, 1052
HpyF3I CTNAG 1 cut(s) 741
HpySE526I ACGT 3 cut(s) 218, 231, 998
Hsp92I GRCGYC 3 cut(s) 5, 204, 243
Hsp92II CATG 7 cut(s) 325, 376, 778, 787, 925, 987, 1036
HspAI GCGC 5 cut(s) 54, 62, 330, 437, 689
Kpn2I TCCGGA 1 cut(s) 567
Kzo9I GATC 4 cut(s) 324, 564, 825, 934
LmnI GCTCC 1 cut(s) 899
Lsp1109I GCAGC 3 cut(s) 589, 673, 975
LweI GCATC 1 cut(s) 722
MaeII ACGT 3 cut(s) 218, 231, 998
MaeIII GTNAC 7 cut(s) 97, 316, 404, 637, 793, 838, 857
MalI GATC 4 cut(s) 326, 566, 827, 936
MboI GATC 4 cut(s) 324, 564, 825, 934
MboII GAAGA 3 cut(s) 85, 469, 946
MhlI GDGCHC 4 cut(s) 315, 668, 896, 977
MlsI TGGCCA 1 cut(s) 399
MluCI AATT 2 cut(s) 446, 630
MluNI TGGCCA 1 cut(s) 399
MlyI GAGTC 2 cut(s) 386, 717
MmeI TCCRAC 2 cut(s) 285, 579
Mox20I TGGCCA 1 cut(s) 399
Mph1103I ATGCAT 1 cut(s) 737
MroI TCCGGA 1 cut(s) 567
MscI TGGCCA 1 cut(s) 399
MseI TTAA 2 cut(s) 335, 753
Msp20I TGGCCA 1 cut(s) 399
MspA1I CMGCKG 2 cut(s) 200, 580
MspI CCGG 2 cut(s) 568, 673
MspR9I CCNGG 1 cut(s) 289
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 5 cut(s) 54, 62, 161, 270, 439
MwoI GCNNNNNNNGC 6 cut(s) 70, 111, 251, 338, 589, 1052
NdeII GATC 4 cut(s) 324, 564, 825, 934
NlaIII CATG 7 cut(s) 325, 376, 778, 787, 925, 987, 1036
NlaIV GGNNCC 3 cut(s) 32, 426, 895
NmeAIII GCCGAG 1 cut(s) 68
NmuCI GTSAC 6 cut(s) 97, 316, 404, 637, 793, 838
NsiI ATGCAT 1 cut(s) 737
NspI RCATGY 1 cut(s) 778
NspV TTCGAA 1 cut(s) 711
PaqCI CACCTGC 1 cut(s) 583
PciI ACATGT 1 cut(s) 774
PcsI WCGNNNNNNNCGW 6 cut(s) 102, 201, 237, 258, 345, 414
Pfl23II CGTACG 1 cut(s) 162
PkrI GCNGC 8 cut(s) 58, 61, 199, 269, 579, 582, 688, 990
PleI GAGTC 2 cut(s) 385, 717
PpsI GAGTC 2 cut(s) 385, 717
PscI ACATGT 1 cut(s) 774
Psp124BI GAGCTC 1 cut(s) 977
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspLI CGTACG 1 cut(s) 162
PspN4I GGNNCC 3 cut(s) 32, 426, 895
PspPI GGNCC 1 cut(s) 30
PstNI CAGNNNCTG 1 cut(s) 583
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SacI GAGCTC 1 cut(s) 977
SalI GTCGAC 1 cut(s) 350
SaqAI TTAA 2 cut(s) 335, 753
SatI GCNGC 8 cut(s) 57, 60, 198, 268, 578, 581, 687, 989
Sau3AI GATC 4 cut(s) 324, 564, 825, 934
Sau96I GGNCC 1 cut(s) 30
SchI GAGTC 2 cut(s) 386, 717
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 4 cut(s) 315, 668, 896, 977
SfaNI GCATC 1 cut(s) 722
SfuI TTCGAA 1 cut(s) 711
SinI GGWCC 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 2 cut(s) 446, 630
SspI AATATT 1 cut(s) 561
SstI GAGCTC 1 cut(s) 977
StyD4I CCNGG 1 cut(s) 287
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 404
TaiI ACGT 3 cut(s) 221, 234, 1001
TaqI TCGA 4 cut(s) 351, 711, 933, 948
TaqII GACCGA 1 cut(s) 18
TasI AATT 2 cut(s) 446, 630
TauI GCSGC 5 cut(s) 59, 62, 200, 270, 583
Tru1I TTAA 2 cut(s) 335, 753
Tru9I TTAA 2 cut(s) 335, 753
TscAI CASTG 2 cut(s) 668, 798
TseFI GTSAC 6 cut(s) 97, 316, 404, 637, 793, 838
TseI GCWGC 3 cut(s) 577, 686, 988
Tsp45I GTSAC 6 cut(s) 97, 316, 404, 637, 793, 838
TspDTI ATGAA 4 cut(s) 587, 689, 772, 994
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 2 cut(s) 668, 798
VneI GTGCAC 1 cut(s) 664
VpaK11BI GGWCC 1 cut(s) 30
XceI RCATGY 1 cut(s) 778
XcmI CCANNNNNNNNNTGG 2 cut(s) 370, 676
XmiI GTMKAC 1 cut(s) 351
Zsp2I ATGCAT 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.