Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0014136

Physical Location & Seq

Genomic Coordinates Reverse (-)

55948457 .. 55949420

Gene Structure 964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0406100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGTTGGATACATACTGGAAATCTTGGATACTTTGATGAAAGTACGTGGCCAACTTTTTGTGGTTGACCGAATTAAAGAACTCATTAAGTATAAAGGTTTTCAGGTAGCACCAGCTGAACTTGAAGGCCTGTTAGTTTCTCACCCTGAAATATTAGACGCCATTGTCATCCAATTTCCTGATGCTGAAGCTGGTGAGGTCCCTGTTGCATATGTTGTGCGCTTGCCAAACAGTTCACTGAACGAAGAAGATATCAAGAGTTTTATAGCGAGTCAGGTTGCATCTTTTAAAAGACTGCGACAAGTGACGTTCATAAACACTGTCCCTAAGTCGGCATCAGGAAAAATCCTCAGAAGAGAGCTCATCGAGAAAGTACGGTCCAAGATAGAAATGGAGACCAAGTCTACAGAGCACCCACAATATCGAACATACTGCACTTGCTTTAAAGTTGCAGGTGGTTCTTATACTCATTATCGAAGAAGCTCAGCTCACAATAATTGTAGTCATAGTTCAAAAAGCAATATAGGATGGTCATTGTTTACTTGGGTCCAATGGAACCGGGACACAAACTGCTCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005385 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006829 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043207 GO:0044464 GO:0046873 GO:0046915 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0070838 GO:0071577 GO:0071944 GO:0072509 GO:0072511 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zip

Protein Analysis

193

Amino Acids

21.97

Weight (kDa)

9.16

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding_C	PF13193	40 - 115	1.5e-15	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30080
fragaria_vesca	FvH4_3g39100
malus_domestica	MD03G1064200.v1.1 MD11G1068000.v1.1
prunus_persica	Prupe.6G053500_v2.0.a1
pyrus_communis	pycom03g05170
rosa_chinensis	RchiOBHm_Chr5g0070461
rosa_laevigata	RLG00000036134
rosa_multiflora	Rmu_co8511571.1_g000001 Rmu_sc0007961.1_g000008
rosa_roxburghii	Rroxscaffold_1G00010750
rosa_rugosa	Rorug05G0406100
rosa_samantha	Rh5AG461300 Rh5BG479600 Rh5CG503800 Rh5DG491700
rosa_wichuraiana	Rw5G043000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	443
AasI	GACNNNNNNGTC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	404
AcoI	YGGCCR	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	2 cut(s)	45, 375
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	125, 513
AluBI	AGCT	5 cut(s)	116, 191, 361, 483, 488
AluI	AGCT	5 cut(s)	116, 191, 361, 483, 488
Alw21I	GWGCWC	2 cut(s)	363, 414
Alw26I	GTCTC	1 cut(s)	389
AoxI	GGCC	2 cut(s)	49, 127
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	3 cut(s)	199, 378, 547
AsuC2I	CCSGG	1 cut(s)	560
AsuHPI	GGTGA	2 cut(s)	134, 206
AvaII	GGWCC	3 cut(s)	199, 378, 547
BalI	TGGCCA	1 cut(s)	51
BanII	GRGCYC	1 cut(s)	363
Bbv12I	GWGCWC	2 cut(s)	363, 414
BccI	CCATC	1 cut(s)	522
BcgI	CGANNNNNNTGC	2 cut(s)	414, 448
BciVI	GTATCC	1 cut(s)	22
BcnI	CCSGG	1 cut(s)	560
BcoDI	GTCTC	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	443
BfuI	GTATCC	1 cut(s)	22
BlpI	GCTNAGC	1 cut(s)	484
Bme1390I	CCNGG	1 cut(s)	560
Bme18I	GGWCC	3 cut(s)	199, 378, 547
BmgT120I	GGNCC	3 cut(s)	199, 378, 547
BmiI	GGNNCC	3 cut(s)	201, 548, 557
BmrFI	CCNGG	1 cut(s)	560
BmsI	GCATC	3 cut(s)	172, 290, 344
Bpu1102I	GCTNAGC	1 cut(s)	484
BpuMI	CCSGG	1 cut(s)	560
BsaAI	YACGTR	1 cut(s)	47
BsaHI	GRCGYC	1 cut(s)	159
BsaI	GGTCTC	1 cut(s)	389
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	1 cut(s)	21
BseGI	GGATG	2 cut(s)	168, 533
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	2 cut(s)	364, 498
BseNI	ACTGG	1 cut(s)	21
BsgI	GTGCAG	1 cut(s)	418
BshFI	GGCC	2 cut(s)	51, 129
BsiHKAI	GWGCWC	2 cut(s)	363, 414
BsiSI	CCGG	1 cut(s)	559
BslFI	GGGAC	3 cut(s)	185, 308, 575
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	3 cut(s)	185, 308, 575
BsnI	GGCC	2 cut(s)	51, 129
Bso31I	GGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	2 cut(s)	363, 414
Bsp1720I	GCTNAGC	1 cut(s)	484
BspANI	GGCC	2 cut(s)	51, 129
BspCNI	CTCAG	2 cut(s)	363, 497
BspLI	GGNNCC	3 cut(s)	201, 548, 557
BspMI	ACCTGC	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	21
BssNI	GRCGYC	1 cut(s)	159
Bst4CI	ACNGT	3 cut(s)	233, 322, 378
Bst6I	CTCTTC	1 cut(s)	349
BstACI	GRCGYC	1 cut(s)	159
BstBAI	YACGTR	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	224
BstDEI	CTNAG	3 cut(s)	327, 350, 484
BstF5I	GGATG	2 cut(s)	168, 533
BstHHI	GCGC	1 cut(s)	222
BstMAI	GTCTC	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	558
BstSFI	CTRYAG	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	51, 129
BtsCI	GGATG	2 cut(s)	168, 533
BtsIMutI	CAGTG	2 cut(s)	236, 318
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	1 cut(s)	224
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	3 cut(s)	199, 378, 547
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	2 cut(s)	44, 374
CviJI	RGCY	7 cut(s)	51, 116, 129, 191, 361, 483, 488
CviKI_1	RGCY	7 cut(s)	51, 116, 129, 191, 361, 483, 488
CviQI	GTAC	2 cut(s)	44, 374
DdeI	CTNAG	3 cut(s)	327, 350, 484
DraI	TTTAAA	2 cut(s)	289, 445
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	349
Ecl136II	GAGCTC	1 cut(s)	361
Eco147I	AGGCCT	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	363
Eco31I	GGTCTC	1 cut(s)	389
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	3 cut(s)	199, 378, 547
Eco53kI	GAGCTC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	363
FaqI	GGGAC	3 cut(s)	185, 308, 575
FauNDI	CATATG	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	404
FokI	GGATG	2 cut(s)	155, 540
FriOI	GRGCYC	1 cut(s)	363
GlaI	GCGC	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	51, 129
HapII	CCGG	1 cut(s)	559
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	222
Hin1I	GRCGYC	1 cut(s)	159
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	271
HpaII	CCGG	1 cut(s)	559
HphI	GGTGA	2 cut(s)	134, 206
Hpy166II	GTNNAC	4 cut(s)	67, 236, 405, 540
Hpy188I	TCNGA	1 cut(s)	353
Hpy188III	TCNNGA	4 cut(s)	179, 256, 339, 367
Hpy8I	GTNNAC	4 cut(s)	67, 236, 405, 540
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	3 cut(s)	233, 322, 378
HpyCH4IV	ACGT	2 cut(s)	46, 308
HpyCH4V	TGCA	4 cut(s)	209, 281, 435, 452
HpyF3I	CTNAG	3 cut(s)	327, 350, 484
HpySE526I	ACGT	2 cut(s)	46, 308
Hsp92I	GRCGYC	1 cut(s)	159
HspAI	GCGC	1 cut(s)	220
LmnI	GCTCC	1 cut(s)	578
LweI	GCATC	3 cut(s)	172, 290, 344
MaeII	ACGT	2 cut(s)	46, 308
MaeIII	GTNAC	1 cut(s)	304
MboII	GAAGA	4 cut(s)	257, 260, 366, 489
MhlI	GDGCHC	2 cut(s)	363, 414
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	3 cut(s)	72, 173, 496
MluNI	TGGCCA	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	280
MnlI	CCTC	2 cut(s)	190, 359
Mox20I	TGGCCA	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	4 cut(s)	75, 87, 288, 444
Msp20I	TGGCCA	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	1 cut(s)	559
MspR9I	CCNGG	1 cut(s)	560
NciI	CCSGG	1 cut(s)	560
NdeI	CATATG	1 cut(s)	211
NlaIV	GGNNCC	3 cut(s)	201, 548, 557
NmuCI	GTSAC	1 cut(s)	304
PaqCI	CACCTGC	1 cut(s)	443
PceI	AGGCCT	1 cut(s)	129
PflFI	GACNNNGTC	1 cut(s)	400
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
Ppu21I	YACGTR	1 cut(s)	47
PpuMI	RGGWCCY	1 cut(s)	199
Psp124BI	GAGCTC	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	199
PspN4I	GGNNCC	3 cut(s)	201, 548, 557
PspPI	GGNCC	3 cut(s)	199, 378, 547
PspPPI	RGGWCCY	1 cut(s)	199
PsrI	GAACNNNNNNTAC	2 cut(s)	493, 525
PsyI	GACNNNGTC	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	45, 375
RsaNI	GTAC	2 cut(s)	44, 374
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	4 cut(s)	75, 87, 288, 444
Sau96I	GGNCC	3 cut(s)	199, 378, 547
SchI	GAGTC	1 cut(s)	280
ScrFI	CCNGG	1 cut(s)	560
SduI	GDGCHC	2 cut(s)	363, 414
SfaNI	GCATC	3 cut(s)	172, 290, 344
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	3 cut(s)	199, 378, 547
Sse9I	AATT	3 cut(s)	72, 173, 496
SseBI	AGGCCT	1 cut(s)	129
SspI	AATATT	1 cut(s)	153
SstI	GAGCTC	1 cut(s)	363
StuI	AGGCCT	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	558
TaaI	ACNGT	3 cut(s)	233, 322, 378
TaiI	ACGT	2 cut(s)	49, 311
TaqI	TCGA	3 cut(s)	366, 424, 475
TaqII	GACCGA	1 cut(s)	84
TasI	AATT	3 cut(s)	72, 173, 496
Tru1I	TTAA	4 cut(s)	75, 87, 288, 444
Tru9I	TTAA	4 cut(s)	75, 87, 288, 444
TscAI	CASTG	2 cut(s)	243, 325
TseFI	GTSAC	1 cut(s)	304
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	2 cut(s)	53, 301
TspRI	CASTG	2 cut(s)	243, 325
Tth111I	GACNNNGTC	1 cut(s)	400
VpaK11BI	GGWCC	3 cut(s)	199, 378, 547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.