AT2G30100

repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012511
Physical Location & Seq
Forward (+)
12847518 .. 12849708
2191 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30100.1

Sequence Viewer

Length: 1512 bp
ATGGCTTATGCTCATGTTTTCGCTTCGTTGACTATCTCGACGATTTCTCTCCGACGATTCCTCCCCCGACTTCATCGAAACCACAGCGTAAAACCCAATTCCCGAATCATATGCAATCTGAAACTAAACTACTCTGCTGGAAAATTTCGCGAGATGGGACTATCACGTTCCGTGGAGCTAGACCAATTCATCACAAGCGAGGAGGAAGAAGGAGAAGCAGAGGAGATAGGAGAAGGATTTTTCGAAGCGATTGAGGAACTAGAGAGGATGACTAGAGAACCATCAGATATACTCGAAGAGATGAATCATCGATTATCTTCTAGAGAATTGCAATTGATGCTTGTTTACTTCGCACAAGAAGGTAGAGATTCATGGTGTACTTTAGAAGTGTTTGAATGGTTGAAAAAGGAGAATAGAGTTGATGAAGAGATAATGGAGTTAATGGTTTCGATTATGTGTGGTTGGGTTAAGAAATTGATTGAAGATGAATGTAATGCACACCAAGTGTTCGACTTATTGATTGAGATGGATTGTGTTGGTTTAAAACCTGGTTTTAGTATGATGGACAAAGTTATTGCTTTGTATTGTGAGATGGGGAAGAAAGAAAGTGCGGTTTTGTTTGTCAAGGAGGTTTTAAGAAGGAGAGATGGTTTTGGTTATAGTGTTGTTGGTGGTGGTGGTTCTGAAGGTAGAAAAGGTGGACCTGTTGGGTATCTTGCTTGGAAATTTATGGTTGATGGAGATTATAGGAAGGCAGTTGATATGGTTATGGAGTTAAGACTTTCAGGGCTGAAACCAGAAGCGTACAGCTATCTTATTGCGATGACAGCTATAGTGAAAGAGCTGAATAGTCTTGGAAAGACATTACGCGAGTTGAAACGCTTTGCACGGGCTGGTTTTGTTGCTGAGATTGATGATCACGATAGGGTACTCATTGAGAAGTATCAATCAGAAACATTATCTCGTGGACTGCAGTTAGCAACTTGGGCGGTTGAGGAAGGCCAAGAAAATGATTCCATTATTGGGGTGGTCCATGAGAGGCTACTCGCTATGTATATATGTGCGGGACGTGGACCAGAAGCAGAGAAACAGCTCTGGAAGATGAAACTTGCAGGGAGAGAACCTGAAGCTGACCTCCACGACATTGTTATGGCGATCTGCGCTTCACAGAAAGAGGTTAATGCAGTTTCTCGGCTACTGACACGAGTTGAGTTCATGGGATCTCAGAGAAAGAAGAAGACTCTGTCATGGTTGCTCAGAGGGTATGTGAAAGGAGGGCACTTCGAAGAGGCTGCAGAGACATTGGTATCGATGATCGACTCTGGGTTGCATCCGGAGTATATTGATCGAGTGGCTGTGATGCAAGGAATGACAAGGAAGATCCAACGGCCGAGAGATGTTGAAGCATATATGAGTCTGTGCAAGAGGCTCTTTGACGCTGGTTTGGTAGGGCCTTGTCTTGTGTATATGTACATAGATAAATATAAGTTGTGGATAGTGAAGATGATGTGA

Protein Analysis

503

Amino Acids

57.55

Weight (kDa)

5.86

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012511)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30100
fragaria_vesca FvH4_3g39290 FvH4_3g39290 FvH4_3g39290
malus_domestica MD03G1062600.v1.1 MD11G1066200.v1.1
prunus_persica Prupe.6G052600_v2.0.a1
pyrus_communis pycom03g05020
rosa_chinensis RchiOBHm_Chr5g0070721
rosa_laevigata RLG00000036153
rosa_multiflora Rmu_sc0002944.1_g000042 Rmu_sc0036080.1_g000003
rosa_roxburghii Rroxscaffold_1G00010470
rosa_rugosa Rorug05G0408000
rosa_samantha Rh5AG463500 Rh5BG481300 Rh5CG505600 Rh5DG493900
rosa_wichuraiana Rw5G043140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 150, 870
AccIII TCCGGA 1 cut(s) 1333
AciI CCGC 3 cut(s) 611, 989, 1064
AclWI GGATC 2 cut(s) 1228, 1375
AcoI YGGCCR 1 cut(s) 1388
AcsI RAATTY 2 cut(s) 143, 725
AcuI CTGAAG 2 cut(s) 705, 1146
AdeI CACNNNGTG 1 cut(s) 505
AfaI GTAC 4 cut(s) 379, 806, 930, 1472
AfiI CCNNNNNNNGG 1 cut(s) 1023
AgsI TTSAA 5 cut(s) 395, 403, 482, 877, 1403
AjiI CACGTC 1 cut(s) 1070
AjnI CCWGG 1 cut(s) 547
AluBI AGCT 6 cut(s) 178, 810, 830, 844, 1093, 1130
AluI AGCT 6 cut(s) 178, 810, 830, 844, 1093, 1130
Alw26I GTCTC 1 cut(s) 1292
AlwI GGATC 2 cut(s) 1228, 1375
Aor13HI TCCGGA 1 cut(s) 1333
AoxI GGCC 3 cut(s) 1000, 1388, 1451
ApeKI GCWGC 1 cut(s) 1292
ApoI RAATTY 2 cut(s) 143, 725
AspLEI GCGC 1 cut(s) 1163
AspS9I GGNCC 4 cut(s) 701, 1030, 1073, 1451
AsuII TTCGAA 2 cut(s) 243, 1284
AvaII GGWCC 3 cut(s) 701, 1030, 1073
BaeGI GKGCMC 1 cut(s) 1281
BaeI ACNNNNGTAYC 2 cut(s) 1290, 1323
BauI CACGAG 2 cut(s) 963, 1203
BbsI GAAGAC 1 cut(s) 1244
BbvI GCAGC 1 cut(s) 1279
BccI CCATC 7 cut(s) 148, 289, 520, 556, 586, 641, 731
BceAI ACGGC 1 cut(s) 1403
BcgI CGANNNNNNTGC 4 cut(s) 93, 127, 1274, 1308
BciT130I CCWGG 1 cut(s) 549
BclI TGATCA 1 cut(s) 916
BcoDI GTCTC 1 cut(s) 1292
BfaI CTAG 4 cut(s) 179, 260, 273, 321
BfmI CTRYAG 3 cut(s) 831, 971, 1293
BisI GCNGC 1 cut(s) 1293
BlsI GCNGC 1 cut(s) 1294
Bme1390I CCNGG 1 cut(s) 549
Bme18I GGWCC 3 cut(s) 701, 1030, 1073
BmgBI CACGTC 1 cut(s) 1070
BmgT120I GGNCC 4 cut(s) 701, 1030, 1073, 1451
BmrFI CCNGG 1 cut(s) 549
BmsI GCATC 3 cut(s) 327, 1339, 1350
BpiI GAAGAC 1 cut(s) 1244
Bpu14I TTCGAA 2 cut(s) 243, 1284
Bsa29I ATCGAT 2 cut(s) 310, 1310
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 1333
BsaXI ACNNNNNCTCC 4 cut(s) 45, 75, 634, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 1023
BseAI TCCGGA 1 cut(s) 1333
BseBI CCWGG 1 cut(s) 549
BseCI ATCGAT 2 cut(s) 310, 1310
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 2 cut(s) 273, 1330
BseLI CCNNNNNNNGG 1 cut(s) 1023
BseMII CTCAG 3 cut(s) 897, 1238, 1270
BseRI GAGGAG 2 cut(s) 215, 236
BseSI GKGCMC 1 cut(s) 1281
BseX3I CGGCCG 1 cut(s) 1388
BseXI GCAGC 1 cut(s) 1279
Bsh1236I CGCG 2 cut(s) 150, 870
Bsh1285I CGRYCG 1 cut(s) 1391
BshFI GGCC 3 cut(s) 1002, 1390, 1453
BshVI ATCGAT 2 cut(s) 310, 1310
BsiEI CGRYCG 1 cut(s) 1391
BsiSI CCGG 1 cut(s) 1334
BslFI GGGAC 2 cut(s) 171, 1080
BslI CCNNNNNNNGG 1 cut(s) 1023
BsmAI GTCTC 1 cut(s) 1292
BsmFI GGGAC 2 cut(s) 171, 1080
BsnI GGCC 3 cut(s) 1002, 1390, 1453
Bsp119I TTCGAA 2 cut(s) 243, 1284
Bsp1286I GDGCHC 1 cut(s) 1281
Bsp13I TCCGGA 1 cut(s) 1333
Bsp1407I TGTACA 1 cut(s) 1470
Bsp143I GATC 6 cut(s) 916, 1155, 1220, 1314, 1345, 1380
Bsp68I TCGCGA 1 cut(s) 150
BspACI CCGC 3 cut(s) 611, 989, 1064
BspANI GGCC 3 cut(s) 1002, 1390, 1453
BspCNI CTCAG 3 cut(s) 898, 1237, 1269
BspDI ATCGAT 2 cut(s) 310, 1310
BspEI TCCGGA 1 cut(s) 1333
BspFNI CGCG 2 cut(s) 150, 870
BspMAI CTGCAG 2 cut(s) 975, 1297
BspPI GGATC 2 cut(s) 1228, 1375
BspT104I TTCGAA 2 cut(s) 243, 1284
BsrGI TGTACA 1 cut(s) 1470
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 6 cut(s) 916, 1155, 1220, 1314, 1345, 1380
BssSI CACGAG 2 cut(s) 963, 1203
Bst2BI CACGAG 2 cut(s) 963, 1203
Bst2UI CCWGG 1 cut(s) 549
Bst6I CTCTTC 3 cut(s) 291, 420, 1281
BstAPI GCANNNNNTGC 1 cut(s) 337
BstAUI TGTACA 1 cut(s) 1470
BstBI TTCGAA 2 cut(s) 243, 1284
BstDEI CTNAG 3 cut(s) 906, 1224, 1256
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 2 cut(s) 273, 1330
BstFNI CGCG 2 cut(s) 150, 870
BstHHI GCGC 1 cut(s) 1163
BstKTI GATC 6 cut(s) 919, 1158, 1223, 1317, 1348, 1383
BstMAI GTCTC 1 cut(s) 1292
BstMBI GATC 6 cut(s) 916, 1155, 1220, 1314, 1345, 1380
BstMCI CGRYCG 1 cut(s) 1391
BstMWI GCNNNNNNNGC 4 cut(s) 337, 827, 986, 1160
BstNI CCWGG 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 547
BstSFI CTRYAG 3 cut(s) 831, 971, 1293
BstSLI GKGCMC 1 cut(s) 1281
BstUI CGCG 2 cut(s) 150, 870
BstV1I GCAGC 1 cut(s) 1279
BstV2I GAAGAC 1 cut(s) 1244
BstX2I RGATCY 2 cut(s) 1220, 1380
BstYI RGATCY 2 cut(s) 1220, 1380
BstZI CGGCCG 1 cut(s) 1388
Bsu15I ATCGAT 2 cut(s) 310, 1310
BsuRI GGCC 3 cut(s) 1002, 1390, 1453
BsuTUI ATCGAT 2 cut(s) 310, 1310
BtgI CCRYGG 1 cut(s) 171
BtgZI GCGATG 1 cut(s) 836
BtrI CACGTC 1 cut(s) 1070
BtsCI GGATG 2 cut(s) 273, 1330
BtuMI TCGCGA 1 cut(s) 150
CfoI GCGC 1 cut(s) 1163
Cfr13I GGNCC 4 cut(s) 701, 1030, 1073, 1451
ClaI ATCGAT 2 cut(s) 310, 1310
CseI GACGC 1 cut(s) 1445
CsiI ACCWGGT 1 cut(s) 547
Csp6I GTAC 4 cut(s) 378, 805, 929, 1471
CviAII CATG 5 cut(s) 14, 372, 1034, 1216, 1248
CviQI GTAC 4 cut(s) 378, 805, 929, 1471
DdeI CTNAG 3 cut(s) 906, 1224, 1256
DpnI GATC 6 cut(s) 918, 1157, 1222, 1316, 1347, 1382
DpnII GATC 6 cut(s) 916, 1155, 1220, 1314, 1345, 1380
DraI TTTAAA 1 cut(s) 543
DraIII CACNNNGTG 1 cut(s) 505
EaeI YGGCCR 1 cut(s) 1388
EagI CGGCCG 1 cut(s) 1388
Eam1104I CTCTTC 3 cut(s) 291, 420, 1281
EarI CTCTTC 3 cut(s) 291, 420, 1281
EclXI CGGCCG 1 cut(s) 1388
Eco47I GGWCC 3 cut(s) 701, 1030, 1073
Eco52I CGGCCG 1 cut(s) 1388
Eco57I CTGAAG 2 cut(s) 705, 1146
EcoO109I RGGNCCY 1 cut(s) 1451
EcoRII CCWGG 1 cut(s) 547
FaeI CATG 5 cut(s) 17, 375, 1037, 1219, 1251
FalI AAGNNNNNCTT 2 cut(s) 1415, 1447
FaqI GGGAC 2 cut(s) 171, 1080
FatI CATG 5 cut(s) 13, 371, 1033, 1215, 1247
FauI CCCGC 1 cut(s) 1057
FauNDI CATATG 1 cut(s) 110
FbaI TGATCA 1 cut(s) 916
Fnu4HI GCNGC 1 cut(s) 1293
FokI GGATG 2 cut(s) 280, 1317
Fsp4HI GCNGC 1 cut(s) 1293
FspBI CTAG 4 cut(s) 179, 260, 273, 321
GlaI GCGC 1 cut(s) 1162
GluI GCNGC 1 cut(s) 1293
HaeIII GGCC 3 cut(s) 1002, 1390, 1453
HapII CCGG 1 cut(s) 1334
HgaI GACGC 1 cut(s) 1445
HhaI GCGC 1 cut(s) 1163
Hin1II CATG 5 cut(s) 17, 375, 1037, 1219, 1251
Hin6I GCGC 1 cut(s) 1161
HinP1I GCGC 1 cut(s) 1161
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HinfI GANTC 8 cut(s) 57, 105, 304, 368, 1013, 1240, 1319, 1414
HpaII CCGG 1 cut(s) 1334
Hpy166II GTNNAC 6 cut(s) 30, 346, 378, 701, 968, 1073
Hpy188I TCNGA 7 cut(s) 53, 120, 286, 685, 952, 1227, 1259
Hpy188III TCNNGA 7 cut(s) 37, 102, 149, 321, 920, 1096, 1334
Hpy8I GTNNAC 6 cut(s) 30, 346, 378, 701, 968, 1073
Hpy99I CGWCG 2 cut(s) 43, 57
HpyAV CCTTC 7 cut(s) 203, 227, 353, 633, 680, 745, 992
HpyCH4IV ACGT 2 cut(s) 166, 1069
HpyF10VI GCNNNNNNNGC 4 cut(s) 337, 827, 986, 1160
HpyF3I CTNAG 3 cut(s) 906, 1224, 1256
HpySE526I ACGT 2 cut(s) 166, 1069
Hsp92II CATG 5 cut(s) 17, 375, 1037, 1219, 1251
HspAI GCGC 1 cut(s) 1161
Kpn2I TCCGGA 1 cut(s) 1333
Ksp22I TGATCA 1 cut(s) 916
Kzo9I GATC 6 cut(s) 916, 1155, 1220, 1314, 1345, 1380
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 1 cut(s) 1279
LweI GCATC 3 cut(s) 327, 1339, 1350
MabI ACCWGGT 1 cut(s) 547
MaeI CTAG 4 cut(s) 179, 260, 273, 321
MaeII ACGT 2 cut(s) 166, 1069
MalI GATC 6 cut(s) 918, 1157, 1222, 1316, 1347, 1382
MboI GATC 6 cut(s) 916, 1155, 1220, 1314, 1345, 1380
MfeI CAATTG 1 cut(s) 332
MflI RGATCY 2 cut(s) 1220, 1380
MhlI GDGCHC 1 cut(s) 1281
MluCI AATT 7 cut(s) 97, 143, 185, 326, 332, 473, 725
MlyI GAGTC 3 cut(s) 1234, 1313, 1423
MmeI TCCRAC 2 cut(s) 76, 1408
MroI TCCGGA 1 cut(s) 1333
MseI TTAA 6 cut(s) 440, 468, 542, 635, 776, 1179
MslI CAYNNNNRTG 1 cut(s) 1148
MspI CCGG 1 cut(s) 1334
MspR9I CCNGG 1 cut(s) 549
MunI CAATTG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 549
MvnI CGCG 2 cut(s) 150, 870
MwoI GCNNNNNNNGC 4 cut(s) 337, 827, 986, 1160
NdeI CATATG 1 cut(s) 110
NdeII GATC 6 cut(s) 916, 1155, 1220, 1314, 1345, 1380
NlaIII CATG 5 cut(s) 17, 375, 1037, 1219, 1251
NmeAIII GCCGAG 2 cut(s) 1171, 1416
NruI TCGCGA 1 cut(s) 150
NspV TTCGAA 2 cut(s) 243, 1284
PfeI GAWTC 5 cut(s) 57, 105, 304, 368, 1013
PflFI GACNNNGTC 1 cut(s) 1243
PkrI GCNGC 1 cut(s) 1294
PleI GAGTC 3 cut(s) 1234, 1313, 1422
PpsI GAGTC 3 cut(s) 1234, 1313, 1422
Psp6I CCWGG 1 cut(s) 547
PspGI CCWGG 1 cut(s) 547
PspPI GGNCC 4 cut(s) 701, 1030, 1073, 1451
PstI CTGCAG 2 cut(s) 975, 1297
PsuI RGATCY 2 cut(s) 1220, 1380
PsyI GACNNNGTC 1 cut(s) 1243
RruI TCGCGA 1 cut(s) 150
RsaI GTAC 4 cut(s) 379, 806, 930, 1472
RsaNI GTAC 4 cut(s) 378, 805, 929, 1471
RseI CAYNNNNRTG 1 cut(s) 1148
SaqAI TTAA 6 cut(s) 440, 468, 542, 635, 776, 1179
SatI GCNGC 1 cut(s) 1293
Sau3AI GATC 6 cut(s) 916, 1155, 1220, 1314, 1345, 1380
Sau96I GGNCC 4 cut(s) 701, 1030, 1073, 1451
SchI GAGTC 3 cut(s) 1234, 1313, 1423
ScrFI CCNGG 1 cut(s) 549
SduI GDGCHC 1 cut(s) 1281
SexAI ACCWGGT 1 cut(s) 547
SfaNI GCATC 3 cut(s) 327, 1339, 1350
SfcI CTRYAG 3 cut(s) 831, 971, 1293
SfuI TTCGAA 2 cut(s) 243, 1284
SinI GGWCC 3 cut(s) 701, 1030, 1073
SmiMI CAYNNNNRTG 1 cut(s) 1148
Sse9I AATT 7 cut(s) 97, 143, 185, 326, 332, 473, 725
SsiI CCGC 3 cut(s) 611, 989, 1064
SspMI CTAG 4 cut(s) 179, 260, 273, 321
StyD4I CCNGG 1 cut(s) 547
TaiI ACGT 2 cut(s) 169, 1072
TasI AATT 7 cut(s) 97, 143, 185, 326, 332, 473, 725
TatI WGTACW 2 cut(s) 377, 1470
TfiI GAWTC 5 cut(s) 57, 105, 304, 368, 1013
Tru1I TTAA 6 cut(s) 440, 468, 542, 635, 776, 1179
Tru9I TTAA 6 cut(s) 440, 468, 542, 635, 776, 1179
TseI GCWGC 1 cut(s) 1292
TspDTI ATGAA 8 cut(s) 62, 178, 317, 360, 438, 501, 1118, 1204
TspGWI ACGGA 1 cut(s) 160
Tth111I GACNNNGTC 1 cut(s) 1243
VpaK11BI GGWCC 3 cut(s) 701, 1030, 1073
XapI RAATTY 2 cut(s) 143, 725
XbaI TCTAGA 1 cut(s) 320
XcmI CCANNNNNNNNNTGG 1 cut(s) 1024
XspI CTAG 4 cut(s) 179, 260, 273, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.