MD03G1062600.v1.1

Pentatricopeptide repeat-containing protein At2g30100

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
5032977 .. 5035848
2872 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1062600.v1.1.491

Sequence Viewer

Length: 1503 bp
ATGGCCTCTGCTCAGGGGATTGCTTCGCTGACCCGGTTGTGTTTTGCGGTTAAACGGCACCGTTTTATCGGTCGCCAGGGTTTTTCGGCTCAATCTTGCGCTAGGGGTTTTCCCATATTCTGCAAACAACAAAACCCCAACTTGGTCATTGTGAAATCGAGCCAAGTTCGAGACTTTAGGGTTTTCAATTCGGTTCAATTGGACCAGTTCGTGACCAGCGACGACGAGGGCGAAATGGGTGAAGGTTTCTTTGAGGCAATTGAGGAATTGGAGCGGATGGCAAGAGAGCCGTCCGATGTTCTTGAGGAAATGAACGACCGGTTGTCGGCCAGAGAGTTGCAGCTTGTGTTGGTGTACTTTTCTCAGGAGGGTAGGGACTCATGGTGTGCCCTTGAGGTGTTTGAGTGGCTCCGTAAGGAGAATCGGGTCGATAAGGAGACGATGGAGCTCATGGTTTCGATAATGTGTAGTTGGGTCAAGAAGTTGATTGAGGGGGAGCATGACATTGGGGATGTGGTGGACCTTCTTGTGGAATCGGATTGTGTGGGTTTGAAGCCGAGTTTTAGCATGATGGAGAAGGTGATATCTTTGTACTGGGAGATGGGTGAGAAGGAAAAGGCGGTTTTCTTTGTGAAAGAGGTGTTAAAGCGCAGAATTGTTTATTCGGAGGAAGACGATACAGATGGGCATAAAGGAGGGCCGACTGGCTATCTTGCTTGGAAGATGATGGTTGAGGGTAACTATAGGGATTCAGTGAAGTTGGTGATTCATCTAAGAGAATCTGGGCTGAAGCCAGAGGTCTACAGTTACCTCATTGCAATGACAGCTGTGGTTAAGGAACTAAATGAACTTGCGAAGGCTTTGCGGAAGTTGAAGGGTTTTGCAAGGGCTGGGCTGGTAGCTGAATTTGATACAGAAAATGTTGGCCTTATTGAGAAGTATCAGTCAGATCTTATAGCTGATGGAGTACAACTGTCCAATTGGGTGATTGAGGAGGGAAGTTCTTCACTCCATGGGGTGGTTCATGAGAGGCTCCTGGCTATGTATATCTGCTCTGGACGTGGCCTTGAGGCCGAGAGGCAGTTGTGGGAAATGAAACTTGTTGGTAAAGAGGCGGATGCTGACCTCTATGACATAGTTTTAGCCATCTGTGCTTCCCAAAAGGAGGCCAATGCCATCAGACGGTTGCTTACTAGAACAGATGTTTCCAGCTCTCTGCGTAAAAAGAAAAGCCTATCATGGTTGCTAAGAGGTTACATTAAAGGGGGACATTTTGATGATGCTGCAGAAACAGTAATAAAAATGCTTGATTTGGGTTTGCACCCAGAGTTTTTGGATAGGGCAGCTGTGCTGCAGGGACTACAGAAAAGGATCCAACAATCTGGCGGTGTAGATACTTACCTCAAACTTTGCAACCGCCTCTCAGATGCCAATTTGATTGGGCCGTCTCTTCTATATCTGTTTATAAAGAAATATAAGCTATGGATCATAAAAACGCTTTAA

Protein Analysis

501

Amino Acids

56.79

Weight (kDa)

5.82

Isoelectric Point (pI)

31.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012511)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1466
AccB1I GGYRCC 1 cut(s) 57
AccB7I CCANNNNNTGG 1 cut(s) 1018
AccBSI CCGCTC 1 cut(s) 274
AccI GTMKAC 1 cut(s) 801
AciI CCGC 7 cut(s) 47, 274, 620, 865, 1115, 1386, 1417
AclWI GGATC 3 cut(s) 1366, 1379, 1493
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 1 cut(s) 905
AcuI CTGAAG 1 cut(s) 809
AfaI GTAC 3 cut(s) 356, 593, 969
AfiI CCNNNNNNNGG 6 cut(s) 142, 325, 529, 1018, 1165, 1182
AgeI ACCGGT 1 cut(s) 318
AgsI TTSAA 4 cut(s) 187, 197, 553, 874
AhdI GACNNNNNGTC 1 cut(s) 322
AjiI CACGTC 1 cut(s) 1061
AjnI CCWGG 2 cut(s) 75, 1035
AluBI AGCT 8 cut(s) 343, 448, 827, 902, 959, 1212, 1346, 1480
AluI AGCT 8 cut(s) 343, 448, 827, 902, 959, 1212, 1346, 1480
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 3 cut(s) 165, 431, 1452
AlwI GGATC 3 cut(s) 1366, 1379, 1493
AoxI GGCC 8 cut(s) 3, 327, 698, 925, 1063, 1071, 1167, 1442
ApeKI GCWGC 4 cut(s) 340, 1283, 1343, 1351
ApoI RAATTY 1 cut(s) 905
AsiGI ACCGGT 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 1003
AspLEI GCGC 2 cut(s) 101, 651
AspS9I GGNCC 4 cut(s) 202, 520, 698, 1442
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 5 cut(s) 251, 592, 617, 775, 997
AvaII GGWCC 2 cut(s) 202, 520
BaeGI GKGCMC 1 cut(s) 391
BamHI GGATCC 1 cut(s) 1371
BanI GGYRCC 1 cut(s) 57
BanII GRGCYC 1 cut(s) 450
BbsI GAAGAC 1 cut(s) 678
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 4 cut(s) 352, 1270, 1338, 1355
BccI CCATC 9 cut(s) 271, 436, 565, 595, 677, 721, 956, 1154, 1184
BceAI ACGGC 3 cut(s) 71, 274, 1429
BcgI CGANNNNNNTGC 2 cut(s) 844, 878
BciT130I CCWGG 2 cut(s) 77, 1037
BcnI CCSGG 1 cut(s) 34
BcoDI GTCTC 3 cut(s) 165, 431, 1452
BfaI CTAG 2 cut(s) 102, 1194
BfmI CTRYAG 5 cut(s) 742, 802, 1284, 1352, 1361
BglII AGATCT 1 cut(s) 949
BisI GCNGC 4 cut(s) 341, 1284, 1344, 1352
BlsI GCNGC 4 cut(s) 342, 1285, 1345, 1353
Bme1390I CCNGG 3 cut(s) 34, 77, 1037
Bme18I GGWCC 2 cut(s) 202, 520
BmeRI GACNNNNNGTC 1 cut(s) 322
BmgBI CACGTC 1 cut(s) 1061
BmgT120I GGNCC 4 cut(s) 202, 520, 698, 1442
BmiI GGNNCC 4 cut(s) 59, 410, 1034, 1373
BmrFI CCNGG 3 cut(s) 34, 77, 1037
BmrI ACTGGG 1 cut(s) 604
BmsI GCATC 3 cut(s) 1108, 1270, 1417
BmuI ACTGGG 1 cut(s) 604
BpiI GAAGAC 1 cut(s) 678
Bpu10I CCTNAGC 1 cut(s) 12
BpuEI CTTGAG 3 cut(s) 323, 413, 1088
BpuMI CCSGG 1 cut(s) 34
BsaJI CCNNGG 2 cut(s) 76, 1012
BsaWI WCCGGW 1 cut(s) 318
Bsc4I CCNNNNNNNGG 6 cut(s) 142, 325, 529, 1018, 1165, 1182
Bse118I RCCGGY 1 cut(s) 318
Bse1I ACTGG 3 cut(s) 205, 599, 709
Bse3DI GCAATG 2 cut(s) 813, 825
BseBI CCWGG 2 cut(s) 77, 1037
BseDI CCNNGG 2 cut(s) 76, 1012
BseGI GGATG 3 cut(s) 282, 517, 1123
BseLI CCNNNNNNNGG 6 cut(s) 142, 325, 529, 1018, 1165, 1182
BseMI GCAATG 2 cut(s) 813, 825
BseMII CTCAG 3 cut(s) 26, 377, 1437
BseNI ACTGG 3 cut(s) 205, 599, 709
BseRI GAGGAG 1 cut(s) 1007
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 4 cut(s) 352, 1270, 1338, 1355
BseYI CCCAGC 1 cut(s) 890
Bsh1285I CGRYCG 2 cut(s) 73, 319
BshFI GGCC 8 cut(s) 5, 329, 700, 927, 1065, 1073, 1169, 1444
BshNI GGYRCC 1 cut(s) 57
BshTI ACCGGT 1 cut(s) 318
BsiEI CGRYCG 2 cut(s) 73, 319
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 2 cut(s) 34, 319
BslFI GGGAC 3 cut(s) 389, 1281, 1371
BslI CCNNNNNNNGG 6 cut(s) 142, 325, 529, 1018, 1165, 1182
BsmAI GTCTC 3 cut(s) 165, 431, 1452
BsmBI CGTCTC 2 cut(s) 431, 1452
BsmFI GGGAC 3 cut(s) 389, 1281, 1371
BsnI GGCC 8 cut(s) 5, 329, 700, 927, 1065, 1073, 1169, 1444
Bsp1286I GDGCHC 2 cut(s) 391, 450
Bsp143I GATC 3 cut(s) 949, 1371, 1485
Bsp19I CCATGG 1 cut(s) 1012
BspACI CCGC 7 cut(s) 47, 274, 620, 865, 1115, 1386, 1417
BspANI GGCC 8 cut(s) 5, 329, 700, 927, 1065, 1073, 1169, 1444
BspCNI CTCAG 3 cut(s) 25, 376, 1436
BspHI TCATGA 1 cut(s) 1024
BspLI GGNNCC 4 cut(s) 59, 410, 1034, 1373
BspMAI CTGCAG 2 cut(s) 1288, 1356
BspPI GGATC 3 cut(s) 1366, 1379, 1493
BspT107I GGYRCC 1 cut(s) 57
BsrBI CCGCTC 1 cut(s) 274
BsrDI GCAATG 2 cut(s) 813, 825
BsrFI RCCGGY 1 cut(s) 318
BsrI ACTGG 3 cut(s) 205, 599, 709
BssAI RCCGGY 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 76, 1012
BssMI GATC 3 cut(s) 949, 1371, 1485
BssT1I CCWWGG 1 cut(s) 1012
Bst2UI CCWGG 2 cut(s) 77, 1037
Bst4CI ACNGT 5 cut(s) 62, 806, 975, 1185, 1294
Bst6I CTCTTC 1 cut(s) 1455
BstDEI CTNAG 5 cut(s) 12, 363, 773, 1247, 1423
BstDSI CCRYGG 1 cut(s) 1012
BstF5I GGATG 3 cut(s) 282, 517, 1123
BstHHI GCGC 2 cut(s) 101, 651
BstKTI GATC 3 cut(s) 952, 1374, 1488
BstMAI GTCTC 3 cut(s) 165, 431, 1452
BstMBI GATC 3 cut(s) 949, 1371, 1485
BstMCI CGRYCG 2 cut(s) 73, 319
BstMWI GCNNNNNNNGC 2 cut(s) 824, 1151
BstNI CCWGG 2 cut(s) 77, 1037
BstSCI CCNGG 3 cut(s) 32, 75, 1035
BstSFI CTRYAG 5 cut(s) 742, 802, 1284, 1352, 1361
BstSLI GKGCMC 1 cut(s) 391
BstV1I GCAGC 4 cut(s) 352, 1270, 1338, 1355
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 2 cut(s) 949, 1371
BstXI CCANNNNNNTGG 1 cut(s) 1382
BstYI RGATCY 2 cut(s) 949, 1371
BsuRI GGCC 8 cut(s) 5, 329, 700, 927, 1065, 1073, 1169, 1444
BtgI CCRYGG 1 cut(s) 1012
BtrI CACGTC 1 cut(s) 1061
BtsCI GGATG 3 cut(s) 282, 517, 1123
BtsIMutI CAGTG 1 cut(s) 759
CciI TCATGA 1 cut(s) 1024
CfoI GCGC 2 cut(s) 101, 651
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 4 cut(s) 202, 520, 698, 1442
Csp6I GTAC 3 cut(s) 355, 592, 968
CspAI ACCGGT 1 cut(s) 318
CviAII CATG 7 cut(s) 381, 451, 500, 568, 1013, 1025, 1239
CviQI GTAC 3 cut(s) 355, 592, 968
DdeI CTNAG 5 cut(s) 12, 363, 773, 1247, 1423
DpnI GATC 3 cut(s) 951, 1373, 1487
DpnII GATC 3 cut(s) 949, 1371, 1485
DriI GACNNNNNGTC 1 cut(s) 322
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 1455
Eam1105I GACNNNNNGTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 1455
EciI GGCGGA 1 cut(s) 1130
Ecl136II GAGCTC 1 cut(s) 448
Eco130I CCWWGG 1 cut(s) 1012
Eco24I GRGCYC 1 cut(s) 450
Eco32I GATATC 1 cut(s) 585
Eco47I GGWCC 2 cut(s) 202, 520
Eco53kI GAGCTC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 809
EcoICRI GAGCTC 1 cut(s) 448
EcoRII CCWGG 2 cut(s) 75, 1035
EcoRV GATATC 1 cut(s) 585
EcoT14I CCWWGG 1 cut(s) 1012
EcoT38I GRGCYC 1 cut(s) 450
ErhI CCWWGG 1 cut(s) 1012
Esp3I CGTCTC 2 cut(s) 431, 1452
FaeI CATG 7 cut(s) 384, 454, 503, 571, 1016, 1028, 1242
FaqI GGGAC 3 cut(s) 389, 1281, 1371
FatI CATG 7 cut(s) 380, 450, 499, 567, 1012, 1024, 1238
FblI GTMKAC 1 cut(s) 801
Fnu4HI GCNGC 4 cut(s) 341, 1284, 1344, 1352
FokI GGATG 3 cut(s) 289, 524, 1130
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 4 cut(s) 341, 1284, 1344, 1352
FspBI CTAG 2 cut(s) 102, 1194
GlaI GCGC 2 cut(s) 100, 650
GluI GCNGC 4 cut(s) 341, 1284, 1344, 1352
GsaI CCCAGC 1 cut(s) 894
HaeIII GGCC 8 cut(s) 5, 329, 700, 927, 1065, 1073, 1169, 1444
HapII CCGG 2 cut(s) 34, 319
HhaI GCGC 2 cut(s) 101, 651
Hin1II CATG 7 cut(s) 384, 454, 503, 571, 1016, 1028, 1242
Hin6I GCGC 2 cut(s) 99, 649
HinP1I GCGC 2 cut(s) 99, 649
HinfI GANTC 6 cut(s) 377, 421, 533, 749, 766, 779
HpaII CCGG 2 cut(s) 34, 319
HphI GGTGA 5 cut(s) 251, 592, 617, 775, 997
Hpy166II GTNNAC 3 cut(s) 355, 520, 802
Hpy188I TCNGA 6 cut(s) 295, 538, 667, 949, 1181, 1426
Hpy188III TCNNGA 7 cut(s) 170, 211, 302, 365, 478, 1025, 1056
Hpy8I GTNNAC 3 cut(s) 355, 520, 802
Hpy99I CGWCG 2 cut(s) 224, 227
HpyAV CCTTC 6 cut(s) 236, 533, 571, 604, 850, 868
HpyCH4III ACNGT 5 cut(s) 62, 806, 975, 1185, 1294
HpyCH4IV ACGT 1 cut(s) 1060
HpyCH4V TGCA 8 cut(s) 123, 340, 818, 884, 1286, 1321, 1354, 1413
HpyF10VI GCNNNNNNNGC 2 cut(s) 824, 1151
HpyF3I CTNAG 5 cut(s) 12, 363, 773, 1247, 1423
HpySE526I ACGT 1 cut(s) 1060
Hsp92II CATG 7 cut(s) 384, 454, 503, 571, 1016, 1028, 1242
HspAI GCGC 2 cut(s) 99, 649
Kzo9I GATC 3 cut(s) 949, 1371, 1485
LmnI GCTCC 5 cut(s) 271, 414, 445, 496, 1038
Lsp1109I GCAGC 4 cut(s) 352, 1270, 1338, 1355
LweI GCATC 3 cut(s) 1108, 1270, 1417
MaeI CTAG 2 cut(s) 102, 1194
MaeII ACGT 1 cut(s) 1060
MaeIII GTNAC 4 cut(s) 211, 737, 806, 1253
MalI GATC 3 cut(s) 951, 1373, 1487
MbiI CCGCTC 1 cut(s) 274
MboI GATC 3 cut(s) 949, 1371, 1485
MboII GAAGA 4 cut(s) 683, 733, 996, 1442
MfeI CAATTG 3 cut(s) 197, 258, 979
MflI RGATCY 2 cut(s) 949, 1371
MhlI GDGCHC 2 cut(s) 391, 450
MluCI AATT 8 cut(s) 187, 197, 258, 266, 654, 905, 979, 1432
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 1 cut(s) 1399
MroXI GAANNNNTTC 1 cut(s) 1003
MseI TTAA 5 cut(s) 51, 644, 834, 1260, 1501
MslI CAYNNNNRTG 2 cut(s) 818, 1275
MspA1I CMGCKG 2 cut(s) 827, 1346
MspI CCGG 2 cut(s) 34, 319
MspR9I CCNGG 3 cut(s) 34, 77, 1037
MunI CAATTG 3 cut(s) 197, 258, 979
MvaI CCWGG 2 cut(s) 77, 1037
MwoI GCNNNNNNNGC 2 cut(s) 824, 1151
NciI CCSGG 1 cut(s) 34
NcoI CCATGG 1 cut(s) 1012
NdeII GATC 3 cut(s) 949, 1371, 1485
NlaIII CATG 7 cut(s) 384, 454, 503, 571, 1016, 1028, 1242
NlaIV GGNNCC 4 cut(s) 59, 410, 1034, 1373
NmeAIII GCCGAG 2 cut(s) 582, 1099
NmuCI GTSAC 1 cut(s) 211
PagI TCATGA 1 cut(s) 1024
PcsI WCGNNNNNNNCGW 2 cut(s) 216, 228
PdmI GAANNNNTTC 1 cut(s) 1003
PfeI GAWTC 5 cut(s) 421, 533, 749, 766, 779
PflMI CCANNNNNTGG 1 cut(s) 1018
PinAI ACCGGT 1 cut(s) 318
PkrI GCNGC 4 cut(s) 342, 1285, 1345, 1353
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
PsiI TTATAA 1 cut(s) 1466
Psp124BI GAGCTC 1 cut(s) 450
Psp6I CCWGG 2 cut(s) 75, 1035
PspFI CCCAGC 1 cut(s) 890
PspGI CCWGG 2 cut(s) 75, 1035
PspN4I GGNNCC 4 cut(s) 59, 410, 1034, 1373
PspPI GGNCC 4 cut(s) 202, 520, 698, 1442
PstI CTGCAG 2 cut(s) 1288, 1356
PsuI RGATCY 2 cut(s) 949, 1371
PvuII CAGCTG 2 cut(s) 827, 1346
RsaI GTAC 3 cut(s) 356, 593, 969
RsaNI GTAC 3 cut(s) 355, 592, 968
RseI CAYNNNNRTG 2 cut(s) 818, 1275
SacI GAGCTC 1 cut(s) 450
SaqAI TTAA 5 cut(s) 51, 644, 834, 1260, 1501
SatI GCNGC 4 cut(s) 341, 1284, 1344, 1352
Sau3AI GATC 3 cut(s) 949, 1371, 1485
Sau96I GGNCC 4 cut(s) 202, 520, 698, 1442
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 34, 77, 1037
SduI GDGCHC 2 cut(s) 391, 450
SfaNI GCATC 3 cut(s) 1108, 1270, 1417
SfcI CTRYAG 5 cut(s) 742, 802, 1284, 1352, 1361
SinI GGWCC 2 cut(s) 202, 520
SmiMI CAYNNNNRTG 2 cut(s) 818, 1275
SmlI CTYRAG 3 cut(s) 302, 392, 1067
SmoI CTYRAG 3 cut(s) 302, 392, 1067
Sse9I AATT 8 cut(s) 187, 197, 258, 266, 654, 905, 979, 1432
SsiI CCGC 7 cut(s) 47, 274, 620, 865, 1115, 1386, 1417
SspMI CTAG 2 cut(s) 102, 1194
SstI GAGCTC 1 cut(s) 450
StyD4I CCNGG 3 cut(s) 32, 75, 1035
StyI CCWWGG 1 cut(s) 1012
TaaI ACNGT 5 cut(s) 62, 806, 975, 1185, 1294
TaiI ACGT 1 cut(s) 1063
TaqI TCGA 4 cut(s) 158, 169, 429, 458
TaqII GACCGA 1 cut(s) 59
TasI AATT 8 cut(s) 187, 197, 258, 266, 654, 905, 979, 1432
TatI WGTACW 3 cut(s) 354, 591, 967
TfiI GAWTC 5 cut(s) 421, 533, 749, 766, 779
Tru1I TTAA 5 cut(s) 51, 644, 834, 1260, 1501
Tru9I TTAA 5 cut(s) 51, 644, 834, 1260, 1501
TscAI CASTG 1 cut(s) 759
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 4 cut(s) 340, 1283, 1343, 1351
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 5 cut(s) 326, 758, 861, 1013, 1109
TspGWI ACGGA 1 cut(s) 401
TspRI CASTG 1 cut(s) 759
Van91I CCANNNNNTGG 1 cut(s) 1018
VpaK11BI GGWCC 2 cut(s) 202, 520
XapI RAATTY 1 cut(s) 905
XmiI GTMKAC 1 cut(s) 801
XmnI GAANNNNTTC 1 cut(s) 1003
XspI CTAG 2 cut(s) 102, 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.