Rmu_sc0002944.1_g000042

Leucine-rich repeats, typical (most populated) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002944.1
OG0012511
Physical Location & Seq
Reverse (-)
195527 .. 199193
3667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002944.1_g000042.1.cds

Sequence Viewer

Length: 1743 bp
atggcctctgctcagggccttgcttcgttgacccagacgtgttttgcagttaaacggtaccgttttagcggttcaaagggcttttcagcaaattcttgtgctagggtttgttctgtaatctgcaaacagcagaataccaactttgtggttgcgaaatcgagtaaagttcgtgactttaggatttttaaatcggttcagttggaccagtttgtgactagtgacgatgaggatgagatgggtgagagtttctttgaggcaattgaggagttagagaggatgagaagggagccgtctgatgttcttgaggaaatgaatgaccggttatcggcgagagagctacagcttgtgttggtgtatttttcgcaggagggtagggactcgtggtgtgcacttgaggtgtttgagtggctccggaaggagaaccgggtcgataaggagaccatggagcttatggtttcgataatgtgtagttggttgaagaggttgattgaggaggggaatgatgttgctgatgtgattgaccttctggtggatgtggattgtgttggtttgaagccgagttttagcatgatggagaaggtgatttcgttgtattgggagatgggggagaaggagaatgcggttttgtttgtgaaagaagtgttgaaacgcgggattgtgtattctgaggaggatgatagagatggacataaaggagggccaactgggtatcttgcttggaagatgatggttgacggtaactatagggattcagtgaagtttgtaattcaactaagagaatctgggttgaagccagaggtttacagctacctcattgcaatgacagctgtggttaaagaactaaatgagcttgggaaagctttacgcaagttgaaagctcttacaagggctgggctagtggctgagtttgattcagaagatgttgggctaattgagaagtatcagtcagatcttctagctgatggattacaattgtctaattgggtgattcaagagggaagttcttcactctgtggggtggttcatgagaggcttctggctatgtatatctgttctggacgtggacttgaggccgaaagacagttgtgggaaatgaagcttgtgggtaaagagcctgatggggacctttatgacattgttttagccatctgtgcttcccgcaaggaaaccagtgccattgcaaggttgcttactaggacagaggttagcagctctttatgtaagaagaaaagcctctcatggctgttaagaggttacattaaaggaggacattttgatgatgctgcagaaacagtaattaaaatgcttgatttgggtttgttcccggagtatttggatagagcagctgtgttgcatggactacggaaaaggattcaacagtctggtactgtagatacttacctcaaactttgcaagcacctttcagatgccaatttgattgaatcctgtctcgtatatctcatgacccagtatattgtggagcatagaccagtaacaagtctgagaaccaaaatggactcgggaaggttttggttctgggacatgccgtcatctcacaaagaggttctgtggatgaaaagaagggtaggaatgagtgttgcttttgtgttagaactttgcttctcactgttgtccaagccatggcaaccgttggtgtgcataaaatatgttggtaaatatcaatcacagtcctcgattcaagaaaagcggttcatcaattcgagagtcgacgactgttcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 ubiquitin

Protein Analysis

580

Amino Acids

66.17

Weight (kDa)

5.89

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012511)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30100
fragaria_vesca FvH4_3g39290 FvH4_3g39290 FvH4_3g39290
malus_domestica MD03G1062600.v1.1 MD11G1066200.v1.1
prunus_persica Prupe.6G052600_v2.0.a1
pyrus_communis pycom03g05020
rosa_chinensis RchiOBHm_Chr5g0070721
rosa_laevigata RLG00000036153
rosa_multiflora Rmu_sc0002944.1_g000042 Rmu_sc0036080.1_g000003
rosa_roxburghii Rroxscaffold_1G00010470
rosa_rugosa Rorug05G0408000
rosa_samantha Rh5AG463500 Rh5BG481300 Rh5CG505600 Rh5DG493900
rosa_wichuraiana Rw5G043140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 57
AccB1I GGYRCC 1 cut(s) 57
AccB7I CCANNNNNTGG 1 cut(s) 1641
AccI GTMKAC 1 cut(s) 1728
AccII CGCG 1 cut(s) 651
AccIII TCCGGA 1 cut(s) 411
AciI CCGC 5 cut(s) 69, 620, 651, 1159, 1708
AcsI RAATTY 1 cut(s) 91
AdeI CACNNNGTG 1 cut(s) 1013
AfaI GTAC 2 cut(s) 59, 1387
AfiI CCNNNNNNNGG 4 cut(s) 325, 529, 1182, 1641
AflIII ACRYGT 1 cut(s) 38
AgeI ACCGGT 1 cut(s) 318
AhdI GACNNNNNGTC 1 cut(s) 1546
AhlI ACTAGT 1 cut(s) 215
AjiI CACGTC 2 cut(s) 39, 1061
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 2 cut(s) 431, 1454
Alw44I GTGCAC 1 cut(s) 387
Ama87I CYCGRG 1 cut(s) 1519
Aor13HI TCCGGA 1 cut(s) 411
AoxI GGCC 4 cut(s) 3, 16, 698, 1071
ApaLI GTGCAC 1 cut(s) 387
ApeKI GCWGC 3 cut(s) 1209, 1283, 1343
ApoI RAATTY 1 cut(s) 91
AsiGI ACCGGT 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 1003
Asp718I GGTACC 1 cut(s) 57
AspS9I GGNCC 4 cut(s) 16, 202, 698, 1123
AsuC2I CCSGG 2 cut(s) 425, 1325
AsuHPI GGTGA 3 cut(s) 251, 592, 997
AvaI CYCGRG 1 cut(s) 1519
AvaII GGWCC 2 cut(s) 202, 1123
BaeGI GKGCMC 1 cut(s) 391
BanI GGYRCC 1 cut(s) 57
BauI CACGAG 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 391
BbvI GCAGC 3 cut(s) 1221, 1270, 1355
BccI CCATC 8 cut(s) 229, 565, 595, 677, 721, 956, 1112, 1154
BceAI ACGGC 2 cut(s) 274, 1531
BcnI CCSGG 2 cut(s) 425, 1325
BcoDI GTCTC 2 cut(s) 431, 1454
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 5 cut(s) 102, 216, 896, 956, 1194
BfmI CTRYAG 4 cut(s) 338, 742, 1284, 1389
BglII AGATCT 1 cut(s) 949
BisI GCNGC 3 cut(s) 1210, 1284, 1344
BlsI GCNGC 3 cut(s) 1211, 1285, 1345
Bme1390I CCNGG 2 cut(s) 425, 1325
Bme18I GGWCC 2 cut(s) 202, 1123
BmeRI GACNNNNNGTC 1 cut(s) 1546
BmeT110I CYCGRG 1 cut(s) 1519
BmgBI CACGTC 2 cut(s) 39, 1061
BmgT120I GGNCC 4 cut(s) 16, 202, 698, 1123
BmiI GGNNCC 4 cut(s) 59, 288, 410, 1124
BmrFI CCNGG 2 cut(s) 425, 1325
BmrI ACTGGG 2 cut(s) 714, 1462
BmsI GCATC 2 cut(s) 1270, 1417
BmuI ACTGGG 2 cut(s) 714, 1462
Bpu10I CCTNAGC 1 cut(s) 12
BpuEI CTTGAG 3 cut(s) 323, 413, 1088
BpuMI CCSGG 2 cut(s) 425, 1325
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 441, 1640
BsaWI WCCGGW 2 cut(s) 318, 411
Bsc4I CCNNNNNNNGG 4 cut(s) 325, 529, 1182, 1641
Bse118I RCCGGY 1 cut(s) 318
Bse1I ACTGG 5 cut(s) 205, 709, 1170, 1468, 1490
Bse3DI GCAATG 3 cut(s) 813, 825, 1176
BseAI TCCGGA 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 441, 1640
BseGI GGATG 5 cut(s) 235, 282, 538, 679, 1578
BseLI CCNNNNNNNGG 4 cut(s) 325, 529, 1182, 1641
BseMI GCAATG 3 cut(s) 813, 825, 1176
BseMII CTCAG 4 cut(s) 26, 657, 894, 1493
BseNI ACTGG 5 cut(s) 205, 709, 1170, 1468, 1490
BseRI GAGGAG 3 cut(s) 278, 506, 683
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 3 cut(s) 1221, 1270, 1355
BseYI CCCAGC 1 cut(s) 890
Bsh1236I CGCG 1 cut(s) 651
BshFI GGCC 4 cut(s) 5, 18, 700, 1073
BshNI GGYRCC 1 cut(s) 57
BshTI ACCGGT 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 391
BsiHKCI CYCGRG 1 cut(s) 1519
BsiSI CCGG 4 cut(s) 319, 412, 424, 1325
BslFI GGGAC 3 cut(s) 389, 1136, 1553
BslI CCNNNNNNNGG 4 cut(s) 325, 529, 1182, 1641
BsmAI GTCTC 2 cut(s) 431, 1454
BsmFI GGGAC 3 cut(s) 389, 1136, 1553
BsmI GAATGC 1 cut(s) 622
BsnI GGCC 4 cut(s) 5, 18, 700, 1073
Bso31I GGTCTC 1 cut(s) 431
BsoBI CYCGRG 1 cut(s) 1519
Bsp1286I GDGCHC 1 cut(s) 391
Bsp13I TCCGGA 1 cut(s) 411
Bsp143I GATC 1 cut(s) 949
Bsp19I CCATGG 2 cut(s) 441, 1640
BspACI CCGC 5 cut(s) 69, 620, 651, 1159, 1708
BspANI GGCC 4 cut(s) 5, 18, 700, 1073
BspCNI CTCAG 4 cut(s) 25, 658, 895, 1494
BspEI TCCGGA 1 cut(s) 411
BspFNI CGCG 1 cut(s) 651
BspHI TCATGA 2 cut(s) 1024, 1461
BspLI GGNNCC 4 cut(s) 59, 288, 410, 1124
BspMAI CTGCAG 1 cut(s) 1288
BspT107I GGYRCC 1 cut(s) 57
BspTNI GGTCTC 1 cut(s) 431
BsrDI GCAATG 3 cut(s) 813, 825, 1176
BsrFI RCCGGY 1 cut(s) 318
BsrI ACTGG 5 cut(s) 205, 709, 1170, 1468, 1490
BssAI RCCGGY 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 441, 1640
BssMI GATC 1 cut(s) 949
BssSI CACGAG 1 cut(s) 379
BssT1I CCWWGG 2 cut(s) 441, 1640
Bst2BI CACGAG 1 cut(s) 379
Bst6I CTCTTC 1 cut(s) 473
BstC8I GCNNGC 1 cut(s) 1415
BstDEI CTNAG 5 cut(s) 12, 666, 773, 903, 1502
BstDSI CCRYGG 2 cut(s) 441, 1640
BstF5I GGATG 5 cut(s) 235, 282, 538, 679, 1578
BstFNI CGCG 1 cut(s) 651
BstKTI GATC 1 cut(s) 952
BstMAI GTCTC 2 cut(s) 431, 1454
BstMBI GATC 1 cut(s) 949
BstMWI GCNNNNNNNGC 2 cut(s) 824, 1151
BstNSI RCATGY 1 cut(s) 1546
BstSCI CCNGG 2 cut(s) 423, 1323
BstSFI CTRYAG 4 cut(s) 338, 742, 1284, 1389
BstSLI GKGCMC 1 cut(s) 391
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 3 cut(s) 1221, 1270, 1355
BstX2I RGATCY 1 cut(s) 949
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 1 cut(s) 949
BsuRI GGCC 4 cut(s) 5, 18, 700, 1073
BtgI CCRYGG 2 cut(s) 441, 1640
BtrI CACGTC 2 cut(s) 39, 1061
BtsCI GGATG 5 cut(s) 235, 282, 538, 679, 1578
BtsIMutI CAGTG 3 cut(s) 759, 1177, 1625
Cac8I GCNNGC 1 cut(s) 1415
CciI TCATGA 2 cut(s) 1024, 1461
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 4 cut(s) 16, 202, 698, 1123
Csp6I GTAC 2 cut(s) 58, 1386
CspAI ACCGGT 1 cut(s) 318
CviAII CATG 8 cut(s) 442, 568, 1025, 1239, 1355, 1462, 1543, 1641
CviQI GTAC 2 cut(s) 58, 1386
DdeI CTNAG 5 cut(s) 12, 666, 773, 903, 1502
DpnI GATC 1 cut(s) 951
DpnII GATC 1 cut(s) 949
DraI TTTAAA 1 cut(s) 187
DraIII CACNNNGTG 1 cut(s) 1013
DriI GACNNNNNGTC 1 cut(s) 1546
Eam1104I CTCTTC 1 cut(s) 473
Eam1105I GACNNNNNGTC 1 cut(s) 1546
EarI CTCTTC 1 cut(s) 473
Eco130I CCWWGG 2 cut(s) 441, 1640
Eco31I GGTCTC 1 cut(s) 431
Eco47I GGWCC 2 cut(s) 202, 1123
Eco88I CYCGRG 1 cut(s) 1519
EcoO109I RGGNCCY 2 cut(s) 16, 1123
EcoT14I CCWWGG 2 cut(s) 441, 1640
ErhI CCWWGG 2 cut(s) 441, 1640
FaeI CATG 8 cut(s) 445, 571, 1028, 1242, 1358, 1465, 1546, 1644
FaqI GGGAC 3 cut(s) 389, 1136, 1553
FatI CATG 8 cut(s) 441, 567, 1024, 1238, 1354, 1461, 1542, 1640
FauI CCCGC 2 cut(s) 644, 1166
FblI GTMKAC 1 cut(s) 1728
Fnu4HI GCNGC 3 cut(s) 1210, 1284, 1344
FokI GGATG 5 cut(s) 242, 289, 545, 686, 1585
Fsp4HI GCNGC 3 cut(s) 1210, 1284, 1344
FspBI CTAG 5 cut(s) 102, 216, 896, 956, 1194
GluI GCNGC 3 cut(s) 1210, 1284, 1344
GsaI CCCAGC 1 cut(s) 894
HaeIII GGCC 4 cut(s) 5, 18, 700, 1073
HapII CCGG 4 cut(s) 319, 412, 424, 1325
Hin1II CATG 8 cut(s) 445, 571, 1028, 1242, 1358, 1465, 1546, 1644
HincII GTYRAC 3 cut(s) 30, 733, 1729
HindII GTYRAC 3 cut(s) 30, 733, 1729
HindIII AAGCTT 2 cut(s) 858, 1097
HpaII CCGG 4 cut(s) 319, 412, 424, 1325
HphI GGTGA 3 cut(s) 251, 592, 997
Hpy166II GTNNAC 6 cut(s) 30, 389, 733, 802, 1064, 1729
Hpy188I TCNGA 6 cut(s) 295, 667, 916, 949, 1426, 1503
Hpy8I GTNNAC 6 cut(s) 30, 389, 733, 802, 1064, 1729
Hpy99I CGWCG 1 cut(s) 1733
HpyAV CCTTC 7 cut(s) 276, 409, 533, 571, 604, 1518, 1575
HpyCH4IV ACGT 2 cut(s) 38, 1060
HpyCH4V TGCA 9 cut(s) 47, 123, 389, 818, 1181, 1286, 1354, 1413, 1659
HpyF10VI GCNNNNNNNGC 2 cut(s) 824, 1151
HpyF3I CTNAG 5 cut(s) 12, 666, 773, 903, 1502
HpySE526I ACGT 2 cut(s) 38, 1060
Hsp92II CATG 8 cut(s) 445, 571, 1028, 1242, 1358, 1465, 1546, 1644
Kpn2I TCCGGA 1 cut(s) 411
KpnI GGTACC 1 cut(s) 61
Kzo9I GATC 1 cut(s) 949
LmnI GCTCC 4 cut(s) 286, 414, 445, 1480
Lsp1109I GCAGC 3 cut(s) 1221, 1270, 1355
LweI GCATC 2 cut(s) 1270, 1417
MaeI CTAG 5 cut(s) 102, 216, 896, 956, 1194
MaeII ACGT 2 cut(s) 38, 1060
MaeIII GTNAC 6 cut(s) 170, 211, 218, 737, 1253, 1492
MalI GATC 1 cut(s) 951
MboI GATC 1 cut(s) 949
MboII GAAGA 6 cut(s) 490, 733, 929, 944, 996, 1237
MfeI CAATTG 2 cut(s) 258, 971
MflI RGATCY 1 cut(s) 949
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 9 cut(s) 91, 258, 765, 930, 971, 979, 1296, 1432, 1717
MlyI GAGTC 3 cut(s) 371, 1511, 1734
MmeI TCCRAC 1 cut(s) 180
MroI TCCGGA 1 cut(s) 411
MroXI GAANNNNTTC 1 cut(s) 1003
MseI TTAA 7 cut(s) 51, 186, 834, 1247, 1260, 1299, 1741
MslI CAYNNNNRTG 2 cut(s) 818, 1275
MspA1I CMGCKG 2 cut(s) 827, 1346
MspI CCGG 4 cut(s) 319, 412, 424, 1325
MspR9I CCNGG 2 cut(s) 425, 1325
MunI CAATTG 2 cut(s) 258, 971
Mva1269I GAATGC 1 cut(s) 622
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 2 cut(s) 824, 1151
NciI CCSGG 2 cut(s) 425, 1325
NcoI CCATGG 2 cut(s) 441, 1640
NdeII GATC 1 cut(s) 949
NlaIII CATG 8 cut(s) 445, 571, 1028, 1242, 1358, 1465, 1546, 1644
NlaIV GGNNCC 4 cut(s) 59, 288, 410, 1124
NmeAIII GCCGAG 1 cut(s) 582
NmuCI GTSAC 3 cut(s) 170, 211, 218
NspI RCATGY 1 cut(s) 1546
PagI TCATGA 2 cut(s) 1024, 1461
PctI GAATGC 1 cut(s) 622
PdmI GAANNNNTTC 1 cut(s) 1003
PfeI GAWTC 7 cut(s) 749, 779, 911, 988, 1372, 1442, 1696
PflMI CCANNNNNTGG 1 cut(s) 1641
PfoI TCCNGGA 1 cut(s) 1323
PinAI ACCGGT 1 cut(s) 318
PkrI GCNGC 3 cut(s) 1211, 1285, 1345
PleI GAGTC 3 cut(s) 371, 1511, 1733
PpsI GAGTC 3 cut(s) 371, 1511, 1733
PpuMI RGGWCCY 1 cut(s) 1123
Psp5II RGGWCCY 1 cut(s) 1123
PspFI CCCAGC 1 cut(s) 890
PspN4I GGNNCC 4 cut(s) 59, 288, 410, 1124
PspPI GGNCC 4 cut(s) 16, 202, 698, 1123
PspPPI RGGWCCY 1 cut(s) 1123
PstI CTGCAG 1 cut(s) 1288
PsuI RGATCY 1 cut(s) 949
PvuII CAGCTG 2 cut(s) 827, 1346
RsaI GTAC 2 cut(s) 59, 1387
RsaNI GTAC 2 cut(s) 58, 1386
RseI CAYNNNNRTG 2 cut(s) 818, 1275
SalI GTCGAC 1 cut(s) 1727
SaqAI TTAA 7 cut(s) 51, 186, 834, 1247, 1260, 1299, 1741
SatI GCNGC 3 cut(s) 1210, 1284, 1344
Sau3AI GATC 1 cut(s) 949
Sau96I GGNCC 4 cut(s) 16, 202, 698, 1123
SchI GAGTC 3 cut(s) 371, 1511, 1734
ScrFI CCNGG 2 cut(s) 425, 1325
SduI GDGCHC 1 cut(s) 391
SfaNI GCATC 2 cut(s) 1270, 1417
SfcI CTRYAG 4 cut(s) 338, 742, 1284, 1389
SinI GGWCC 2 cut(s) 202, 1123
SmiMI CAYNNNNRTG 2 cut(s) 818, 1275
SmlI CTYRAG 3 cut(s) 302, 392, 1067
SmoI CTYRAG 3 cut(s) 302, 392, 1067
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 9 cut(s) 91, 258, 765, 930, 971, 979, 1296, 1432, 1717
SsiI CCGC 5 cut(s) 69, 620, 651, 1159, 1708
SspMI CTAG 5 cut(s) 102, 216, 896, 956, 1194
StyD4I CCNGG 2 cut(s) 423, 1323
StyI CCWWGG 2 cut(s) 441, 1640
TaiI ACGT 2 cut(s) 41, 1063
TaqI TCGA 6 cut(s) 158, 429, 458, 1694, 1721, 1728
TasI AATT 9 cut(s) 91, 258, 765, 930, 971, 979, 1296, 1432, 1717
TfiI GAWTC 7 cut(s) 749, 779, 911, 988, 1372, 1442, 1696
Tru1I TTAA 7 cut(s) 51, 186, 834, 1247, 1260, 1299, 1741
Tru9I TTAA 7 cut(s) 51, 186, 834, 1247, 1260, 1299, 1741
TscAI CASTG 3 cut(s) 759, 1177, 1632
TseFI GTSAC 3 cut(s) 170, 211, 218
TseI GCWGC 3 cut(s) 1209, 1283, 1343
Tsp45I GTSAC 3 cut(s) 170, 211, 218
TspDTI ATGAA 5 cut(s) 326, 1013, 1109, 1589, 1702
TspGWI ACGGA 1 cut(s) 1378
TspRI CASTG 3 cut(s) 759, 1177, 1632
Van91I CCANNNNNTGG 1 cut(s) 1641
VneI GTGCAC 1 cut(s) 387
VpaK11BI GGWCC 2 cut(s) 202, 1123
XapI RAATTY 1 cut(s) 91
XceI RCATGY 1 cut(s) 1546
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XmiI GTMKAC 1 cut(s) 1728
XmnI GAANNNNTTC 1 cut(s) 1003
XspI CTAG 5 cut(s) 102, 216, 896, 956, 1194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.