Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012511

Physical Location & Seq

Genomic Coordinates Reverse (-)

5700812 .. 5703625

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1066200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGCCTCTGCCCAGGGGATTGTTTCGCTGACTCGGTTGTGTTTTGCGGTTAAACGGCAACGTTTTATCGGTCGCCAGGGGTTCTCGGCTCAATCTTGCGCTAGGGTTTTTCCCATAATCTGCAAACATCAAAAACCCATCTTGGTCGTTGCGAAATCAAGCAAAGTTCGAGACTTTAGGGTTTTCAATTCGGTTCAATTGGACCAGTTCCTGACCAGCGACTACGAGGACGAAATGGGTGAAGGTTTCTTCGAGGCAATTGAGGAATTGGAGCGAATGGCAAGGGAGCCGTCCGATGTTCTTGGGGAAATGAACGACCGGTTGTCGGCCAGAGAGTTGCAGCTTGTGTTGGTGTATTTTTCCCAGGAGGGGAGGGACTCGTGGTGTGCCCTTGAGGTGTTTGAGTGGCTCCGAAAGGAGAATCGGGTCGATAAGGAGACGATGGAGCTCATGGTTTCCATAATGTGTAGTTGGGTCAAGAAATTGATTGAGGGGGAGCATGACATTGGGGATGTGGTGGACCTTCTTGTAGAATCGGACTGCGTGGGTTTGAAGCCGAGTTTTAGCATGATGGAGAAGGTCATTTCTTTGTATTGGGAGATGGGTGACAAGGAAAAGGCGGTTTTGTTTGTGAAAGAGGTGTTGAAGCGTGGAATTACGTATTTGGAGGAAGATGATACGGATGGGCATAAGGGAGGGCCAACTGGCTATCTTGCTTGGAAGATGATGGTCGAGGGTAACTATAGGGATTCTGTGACATTTGTGATTCATCTAAGAGAATCAGGGTTGAAGCCAGAGGTCTACAGCTACCTCATTGCAATGACAGCTGTGGTTAAGGAACTAAATGAACTTGCGAAAGCTTTACGCAAGTTGAAAGGTTTTGCAAGGGCTGGGCTGGTAGCTGCATTTGATACAGAAAATATTGGGCTTATTGAGAAGTATCAGTCTGATCTTATAGCTGATGGAGTACAACTGTCCAATTGGGTGATTGAGGAGGGAAGTTCTTTACTCCATGGGGTGGTTCACGAGAGGCTTCTGGCTATGTATATCTGCTCTGGACATGGACTTGAGGCTGAGAGGCAGTTGTGGGAAATGAAACTTGTTGGTAAAGAGGCAGATGCTGACCTTTATGACATTGTTTTAGCTATCTGTGCTTCCCAAAAGGAGGCTAATGCCATAGGACGGTTGCTTACTGGAACAGATGTTTCCAGCTCTCTGCGTAAAAAGAAAAGCCTATCGTGGTTGCTTAGAGGTTACATTAAAGGGGGACATTTTGACGATGCTGCAGAAACAGTAATAAAAATGCTTGATTTGGGTTTGCACCCGGAGTTTTTGGACAGGGCAGCTGTGCTGCAGGGACTACAGAAAAGGATCCAACAATCTGGCGGTGTAGATACTTACCTCAAACTTTGCAAGCGCCTCTCAGATAGCAATTTGATTGGGCCGTGCCTTCTATATCTGTTTATAAAGAAATATAAGCTCTGGATCATAAAAACGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

501

Amino Acids

56.54

Weight (kDa)

5.87

Isoelectric Point (pI)

29.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30100
fragaria_vesca	FvH4_3g39290 FvH4_3g39290 FvH4_3g39290
malus_domestica	MD03G1062600.v1.1 MD11G1066200.v1.1
prunus_persica	Prupe.6G052600_v2.0.a1
pyrus_communis	pycom03g05020
rosa_chinensis	RchiOBHm_Chr5g0070721
rosa_laevigata	RLG00000036153
rosa_multiflora	Rmu_sc0002944.1_g000042 Rmu_sc0036080.1_g000003
rosa_roxburghii	Rroxscaffold_1G00010470
rosa_rugosa	Rorug05G0408000
rosa_samantha	Rh5AG463500 Rh5BG481300 Rh5CG505600 Rh5DG493900
rosa_wichuraiana	Rw5G043140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1466
AccB7I	CCANNNNNTGG	1 cut(s)	1018
AccI	GTMKAC	1 cut(s)	801
AciI	CCGC	3 cut(s)	47, 620, 1386
AclI	AACGTT	1 cut(s)	61
AclWI	GGATC	3 cut(s)	1366, 1379, 1493
AcoI	YGGCCR	1 cut(s)	327
AfaI	GTAC	1 cut(s)	969
AfiI	CCNNNNNNNGG	5 cut(s)	325, 369, 1018, 1165, 1182
AgeI	ACCGGT	1 cut(s)	318
AgsI	TTSAA	6 cut(s)	187, 197, 553, 646, 790, 874
AhdI	GACNNNNNGTC	1 cut(s)	322
AjnI	CCWGG	3 cut(s)	12, 75, 363
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	165, 431
AlwI	GGATC	3 cut(s)	1366, 1379, 1493
AlwNI	CAGNNNCTG	2 cut(s)	211, 1121
AoxI	GGCC	4 cut(s)	3, 327, 698, 1442
ApeKI	GCWGC	5 cut(s)	340, 902, 1283, 1343, 1351
AsiGI	ACCGGT	1 cut(s)	318
AspLEI	GCGC	2 cut(s)	101, 1419
AspS9I	GGNCC	4 cut(s)	202, 520, 698, 1442
AsuC2I	CCSGG	1 cut(s)	1325
AsuHPI	GGTGA	3 cut(s)	251, 617, 997
AvaII	GGWCC	2 cut(s)	202, 520
BaeGI	GKGCMC	1 cut(s)	391
BamHI	GGATCC	1 cut(s)	1371
BanII	GRGCYC	1 cut(s)	450
BauI	CACGAG	2 cut(s)	379, 1025
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	5 cut(s)	352, 889, 1270, 1338, 1355
BccI	CCATC	7 cut(s)	146, 436, 565, 595, 677, 721, 956
BceAI	ACGGC	3 cut(s)	71, 274, 1429
BciT130I	CCWGG	3 cut(s)	14, 77, 365
BcnI	CCSGG	1 cut(s)	1325
BcoDI	GTCTC	2 cut(s)	165, 431
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	5 cut(s)	742, 802, 1284, 1352, 1361
BfoI	RGCGCY	1 cut(s)	1420
BisI	GCNGC	5 cut(s)	341, 903, 1284, 1344, 1352
BlsI	GCNGC	5 cut(s)	342, 904, 1285, 1345, 1353
Bme1390I	CCNGG	4 cut(s)	14, 77, 365, 1325
Bme18I	GGWCC	2 cut(s)	202, 520
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmgT120I	GGNCC	4 cut(s)	202, 520, 698, 1442
BmiI	GGNNCC	3 cut(s)	288, 410, 1373
BmrFI	CCNGG	4 cut(s)	14, 77, 365, 1325
BmsI	GCATC	2 cut(s)	1108, 1270
BpuEI	CTTGAG	2 cut(s)	413, 1088
BpuMI	CCSGG	1 cut(s)	1325
BsaAI	YACGTR	1 cut(s)	660
BsaJI	CCNNGG	5 cut(s)	12, 13, 76, 363, 1012
BsaWI	WCCGGW	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	5 cut(s)	325, 369, 1018, 1165, 1182
Bse118I	RCCGGY	1 cut(s)	318
Bse1I	ACTGG	3 cut(s)	205, 709, 1198
Bse3DI	GCAATG	2 cut(s)	813, 825
BseBI	CCWGG	3 cut(s)	14, 77, 365
BseDI	CCNNGG	5 cut(s)	12, 13, 76, 363, 1012
BseGI	GGATG	2 cut(s)	517, 688
BseLI	CCNNNNNNNGG	5 cut(s)	325, 369, 1018, 1165, 1182
BseMI	GCAATG	2 cut(s)	813, 825
BseMII	CTCAG	2 cut(s)	1065, 1437
BseNI	ACTGG	3 cut(s)	205, 709, 1198
BseRI	GAGGAG	1 cut(s)	1007
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	5 cut(s)	352, 889, 1270, 1338, 1355
BseYI	CCCAGC	1 cut(s)	890
Bsh1285I	CGRYCG	2 cut(s)	73, 319
BshFI	GGCC	4 cut(s)	5, 329, 700, 1444
BshTI	ACCGGT	1 cut(s)	318
BsiEI	CGRYCG	2 cut(s)	73, 319
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	2 cut(s)	319, 1325
BslFI	GGGAC	3 cut(s)	389, 1281, 1371
BslI	CCNNNNNNNGG	5 cut(s)	325, 369, 1018, 1165, 1182
BsmAI	GTCTC	2 cut(s)	165, 431
BsmBI	CGTCTC	1 cut(s)	431
BsmFI	GGGAC	3 cut(s)	389, 1281, 1371
BsnI	GGCC	4 cut(s)	5, 329, 700, 1444
Bsp1286I	GDGCHC	2 cut(s)	391, 450
Bsp143I	GATC	3 cut(s)	949, 1371, 1485
Bsp19I	CCATGG	1 cut(s)	1012
BspACI	CCGC	3 cut(s)	47, 620, 1386
BspANI	GGCC	4 cut(s)	5, 329, 700, 1444
BspCNI	CTCAG	2 cut(s)	1066, 1436
BspLI	GGNNCC	3 cut(s)	288, 410, 1373
BspMAI	CTGCAG	2 cut(s)	1288, 1356
BspPI	GGATC	3 cut(s)	1366, 1379, 1493
BsrDI	GCAATG	2 cut(s)	813, 825
BsrFI	RCCGGY	1 cut(s)	318
BsrI	ACTGG	3 cut(s)	205, 709, 1198
BssAI	RCCGGY	1 cut(s)	318
BssECI	CCNNGG	5 cut(s)	12, 13, 76, 363, 1012
BssMI	GATC	3 cut(s)	949, 1371, 1485
BssSI	CACGAG	2 cut(s)	379, 1025
BssT1I	CCWWGG	1 cut(s)	1012
Bst2BI	CACGAG	2 cut(s)	379, 1025
Bst2UI	CCWGG	3 cut(s)	14, 77, 365
Bst4CI	ACNGT	3 cut(s)	975, 1185, 1294
BstBAI	YACGTR	1 cut(s)	660
BstC8I	GCNNGC	1 cut(s)	1415
BstDEI	CTNAG	4 cut(s)	773, 1074, 1247, 1423
BstDSI	CCRYGG	1 cut(s)	1012
BstF5I	GGATG	2 cut(s)	517, 688
BstH2I	RGCGCY	1 cut(s)	1420
BstHHI	GCGC	2 cut(s)	101, 1419
BstKTI	GATC	3 cut(s)	952, 1374, 1488
BstMAI	GTCTC	2 cut(s)	165, 431
BstMBI	GATC	3 cut(s)	949, 1371, 1485
BstMCI	CGRYCG	2 cut(s)	73, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	824, 1151
BstNI	CCWGG	3 cut(s)	14, 77, 365
BstSCI	CCNGG	4 cut(s)	12, 75, 363, 1323
BstSFI	CTRYAG	5 cut(s)	742, 802, 1284, 1352, 1361
BstSLI	GKGCMC	1 cut(s)	391
BstSNI	TACGTA	1 cut(s)	660
BstV1I	GCAGC	5 cut(s)	352, 889, 1270, 1338, 1355
BstX2I	RGATCY	1 cut(s)	1371
BstXI	CCANNNNNNTGG	1 cut(s)	1382
BstYI	RGATCY	1 cut(s)	1371
BsuRI	GGCC	4 cut(s)	5, 329, 700, 1444
BtgI	CCRYGG	1 cut(s)	1012
BtsCI	GGATG	2 cut(s)	517, 688
Cac8I	GCNNGC	1 cut(s)	1415
CaiI	CAGNNNCTG	2 cut(s)	211, 1121
CfoI	GCGC	2 cut(s)	101, 1419
Cfr10I	RCCGGY	1 cut(s)	318
Cfr13I	GGNCC	4 cut(s)	202, 520, 698, 1442
Csp6I	GTAC	1 cut(s)	968
CspAI	ACCGGT	1 cut(s)	318
CviAII	CATG	5 cut(s)	451, 500, 568, 1013, 1061
CviQI	GTAC	1 cut(s)	968
DdeI	CTNAG	4 cut(s)	773, 1074, 1247, 1423
DpnI	GATC	3 cut(s)	951, 1373, 1487
DpnII	GATC	3 cut(s)	949, 1371, 1485
DriI	GACNNNNNGTC	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	327
Eam1105I	GACNNNNNGTC	1 cut(s)	322
Ecl136II	GAGCTC	1 cut(s)	448
Eco105I	TACGTA	1 cut(s)	660
Eco130I	CCWWGG	1 cut(s)	1012
Eco24I	GRGCYC	1 cut(s)	450
Eco47I	GGWCC	2 cut(s)	202, 520
Eco53kI	GAGCTC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	448
EcoRII	CCWGG	3 cut(s)	12, 75, 363
EcoT14I	CCWWGG	1 cut(s)	1012
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	1012
Esp3I	CGTCTC	1 cut(s)	431
FaeI	CATG	5 cut(s)	454, 503, 571, 1016, 1064
FaqI	GGGAC	3 cut(s)	389, 1281, 1371
FatI	CATG	5 cut(s)	450, 499, 567, 1012, 1060
FblI	GTMKAC	1 cut(s)	801
Fnu4HI	GCNGC	5 cut(s)	341, 903, 1284, 1344, 1352
FokI	GGATG	2 cut(s)	524, 695
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	5 cut(s)	341, 903, 1284, 1344, 1352
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	2 cut(s)	100, 1418
GluI	GCNGC	5 cut(s)	341, 903, 1284, 1344, 1352
GsaI	CCCAGC	1 cut(s)	894
HaeII	RGCGCY	1 cut(s)	1420
HaeIII	GGCC	4 cut(s)	5, 329, 700, 1444
HapII	CCGG	2 cut(s)	319, 1325
HhaI	GCGC	2 cut(s)	101, 1419
Hin1II	CATG	5 cut(s)	454, 503, 571, 1016, 1064
Hin6I	GCGC	2 cut(s)	99, 1417
HinP1I	GCGC	2 cut(s)	99, 1417
HindIII	AAGCTT	1 cut(s)	858
HinfI	GANTC	7 cut(s)	31, 377, 421, 533, 749, 766, 779
HpaII	CCGG	2 cut(s)	319, 1325
HphI	GGTGA	3 cut(s)	251, 617, 997
Hpy166II	GTNNAC	3 cut(s)	520, 802, 1024
Hpy188I	TCNGA	5 cut(s)	295, 413, 538, 949, 1426
Hpy188III	TCNNGA	6 cut(s)	170, 211, 478, 1025, 1056, 1483
Hpy8I	GTNNAC	3 cut(s)	520, 802, 1024
HpyAV	CCTTC	4 cut(s)	236, 533, 571, 1460
HpyCH4III	ACNGT	3 cut(s)	975, 1185, 1294
HpyCH4IV	ACGT	2 cut(s)	61, 659
HpyCH4V	TGCA	9 cut(s)	123, 340, 818, 884, 905, 1286, 1321, 1354, 1413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	824, 1151
HpyF3I	CTNAG	4 cut(s)	773, 1074, 1247, 1423
HpySE526I	ACGT	2 cut(s)	61, 659
Hsp92II	CATG	5 cut(s)	454, 503, 571, 1016, 1064
HspAI	GCGC	2 cut(s)	99, 1417
Kzo9I	GATC	3 cut(s)	949, 1371, 1485
LmnI	GCTCC	5 cut(s)	271, 286, 414, 445, 496
Lsp1109I	GCAGC	5 cut(s)	352, 889, 1270, 1338, 1355
LweI	GCATC	2 cut(s)	1108, 1270
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	2 cut(s)	61, 659
MaeIII	GTNAC	4 cut(s)	605, 737, 754, 1253
MalI	GATC	3 cut(s)	951, 1373, 1487
MboI	GATC	3 cut(s)	949, 1371, 1485
MboII	GAAGA	3 cut(s)	241, 683, 733
MfeI	CAATTG	3 cut(s)	197, 258, 979
MflI	RGATCY	1 cut(s)	1371
MhlI	GDGCHC	2 cut(s)	391, 450
MluCI	AATT	8 cut(s)	187, 197, 258, 266, 482, 654, 979, 1432
MlyI	GAGTC	2 cut(s)	25, 371
MmeI	TCCRAC	1 cut(s)	1399
MseI	TTAA	4 cut(s)	51, 834, 1260, 1501
MslI	CAYNNNNRTG	1 cut(s)	818
MspA1I	CMGCKG	2 cut(s)	827, 1346
MspI	CCGG	2 cut(s)	319, 1325
MspR9I	CCNGG	4 cut(s)	14, 77, 365, 1325
MunI	CAATTG	3 cut(s)	197, 258, 979
MvaI	CCWGG	3 cut(s)	14, 77, 365
MwoI	GCNNNNNNNGC	2 cut(s)	824, 1151
NciI	CCSGG	1 cut(s)	1325
NcoI	CCATGG	1 cut(s)	1012
NdeII	GATC	3 cut(s)	949, 1371, 1485
NlaIII	CATG	5 cut(s)	454, 503, 571, 1016, 1064
NlaIV	GGNNCC	3 cut(s)	288, 410, 1373
NmeAIII	GCCGAG	2 cut(s)	65, 582
NmuCI	GTSAC	2 cut(s)	605, 754
PasI	CCCWGGG	1 cut(s)	13
PfeI	GAWTC	5 cut(s)	421, 533, 749, 766, 779
PflMI	CCANNNNNTGG	1 cut(s)	1018
PinAI	ACCGGT	1 cut(s)	318
PkrI	GCNGC	5 cut(s)	342, 904, 1285, 1345, 1353
PleI	GAGTC	2 cut(s)	25, 371
PpsI	GAGTC	2 cut(s)	25, 371
Ppu21I	YACGTR	1 cut(s)	660
PsiI	TTATAA	1 cut(s)	1466
Psp124BI	GAGCTC	1 cut(s)	450
Psp1406I	AACGTT	1 cut(s)	61
Psp6I	CCWGG	3 cut(s)	12, 75, 363
PspFI	CCCAGC	1 cut(s)	890
PspGI	CCWGG	3 cut(s)	12, 75, 363
PspN4I	GGNNCC	3 cut(s)	288, 410, 1373
PspPI	GGNCC	4 cut(s)	202, 520, 698, 1442
PstI	CTGCAG	2 cut(s)	1288, 1356
PstNI	CAGNNNCTG	2 cut(s)	211, 1121
PsuI	RGATCY	1 cut(s)	1371
PvuII	CAGCTG	2 cut(s)	827, 1346
RsaI	GTAC	1 cut(s)	969
RsaNI	GTAC	1 cut(s)	968
RseI	CAYNNNNRTG	1 cut(s)	818
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	4 cut(s)	51, 834, 1260, 1501
SatI	GCNGC	5 cut(s)	341, 903, 1284, 1344, 1352
Sau3AI	GATC	3 cut(s)	949, 1371, 1485
Sau96I	GGNCC	4 cut(s)	202, 520, 698, 1442
SchI	GAGTC	2 cut(s)	25, 371
ScrFI	CCNGG	4 cut(s)	14, 77, 365, 1325
SduI	GDGCHC	2 cut(s)	391, 450
SfaNI	GCATC	2 cut(s)	1108, 1270
SfcI	CTRYAG	5 cut(s)	742, 802, 1284, 1352, 1361
SinI	GGWCC	2 cut(s)	202, 520
SmiMI	CAYNNNNRTG	1 cut(s)	818
SmlI	CTYRAG	2 cut(s)	392, 1067
SmoI	CTYRAG	2 cut(s)	392, 1067
SnaBI	TACGTA	1 cut(s)	660
Sse9I	AATT	8 cut(s)	187, 197, 258, 266, 482, 654, 979, 1432
SsiI	CCGC	3 cut(s)	47, 620, 1386
SspI	AATATT	1 cut(s)	922
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	4 cut(s)	12, 75, 363, 1323
StyI	CCWWGG	1 cut(s)	1012
TaaI	ACNGT	3 cut(s)	975, 1185, 1294
TaiI	ACGT	2 cut(s)	64, 662
TaqI	TCGA	4 cut(s)	169, 252, 429, 732
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	8 cut(s)	187, 197, 258, 266, 482, 654, 979, 1432
TatI	WGTACW	1 cut(s)	967
TfiI	GAWTC	5 cut(s)	421, 533, 749, 766, 779
Tru1I	TTAA	4 cut(s)	51, 834, 1260, 1501
Tru9I	TTAA	4 cut(s)	51, 834, 1260, 1501
TseFI	GTSAC	2 cut(s)	605, 754
TseI	GCWGC	5 cut(s)	340, 902, 1283, 1343, 1351
Tsp45I	GTSAC	2 cut(s)	605, 754
TspDTI	ATGAA	4 cut(s)	326, 758, 861, 1109
TspGWI	ACGGA	1 cut(s)	695
Van91I	CCANNNNNTGG	1 cut(s)	1018
VpaK11BI	GGWCC	2 cut(s)	202, 520
XmiI	GTMKAC	1 cut(s)	801
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.