Prupe.6G052600_v2.0.a1

Pentatricopeptide repeat-containing protein At2g30100

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
3700041 .. 3702908
2868 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G052600.1

Sequence Viewer

Length: 1503 bp
ATGGCATCTGCTCAAGGGCTTGCTTCGTTGACCCATTCGTTATTTGCAGTTAAACGGCAGCGTTTTATGGGTCTCCGTGGTTTCTCAGCGCAATCCTGTGGTAGGGTTTTTCCTAGAATCTGCAAGCACCAGAAACCCAACTTCATCGTTGCGAAGTCGAGTAAAGTTCGAGACTTTAGGCTGTTCAAATCTGTTGAATTGGACCAGTTCCTGACTAGCGACGACGAGGATGAAATGGGTGAAGGTTTCTTTGAGGCGATTGAAGAATTGGAGCGAATGACAAGGGAACCCTCCGATGTTCTTGAGGAAATGAACGACCGGTTATCGGCCAGAGAGTTACAGCTTGTGTTAGTCTACTTTTCTCAGGAGGGTAGGGACTCATGGTGTGCGCTTGAGGTGTTTGAGTGGCTCCGAAAGGAGAACCGGGTCGATAAGGAGACGATGGATCTTATGGTTTCCATAATGTGTAGTTGGGTCAAGAAATTGATTCAGAGGGAACACGACATTGGGGATGTGGTTGACCTTCTTGTGGACATGGATTGTGTGGGTTTGAAGCCGAGTTTTAGCATGATGGAGAAGGTGATTTCTTTGTATTGGGAGATGGGTGAGAAGGAAAAGGCGGTTCTGTTTGTAAAAGAGGTGTTGAAACGTGGAATTGTGTATTCGGAGGAAGACGATACAGATGGGCATAAAGGAGGGCCAACTGGCTATCTTGCTTGGAAGATGATGGTTGAGGGCAACTATAGGGATTCAGTGAAGTTGGTGATTCATCTAAGAGAATCTGGGTTGAAGCCAGAGGTCTACAGCTACCTCATTGCAATGACAGCTGTGGTTAAGGAACTAAATGAACTTGCTAAAGCTTTGCGCAAGTTGAAGGGTTTTACAAGGGCTGGGCTGATAGCTGAATTTGATACAGAAAATGTTGGGCTTATCGAGAAGTATCAGTCAGATCTTCTATCTGATGGAGTACAGTTGTCCAATTGGGTGATTCAGGAGGGAAGTTCTTCACTCCATGGGGTGGTTCATGAGAGGCTCCTGGCAATGTATATCTGCTCTGGGCATGGACTTGAGGCCGAGAGGCAGTTGTGGGAAATGAAACTTGTTGGTAAAGAGGCTGATGCGGACCTTTATGACATTGTGTTAGCCATCTGTGCTTCCCAAAAGGAGGCCAGTGCTATAGGACGGTTGCTTACGAGAACAGAGGTTACCAGTTCTCTGCGTAAAAAGAAAAGCCTATCATGGTTGCTAAGAGGGTACATTAAAGGGGGACATTTTGATGATGCTGCAGAAACAGTAATAAAAATGCTTGATTTGGGTTTGTGCCCGGAGTTTTTGGACAGGGCAGCTGTGCTGCAAGGGCTAAGGAAAAGCATCCAAGAATCTGGTGGTGTAGATACTTACCTCAAACTTTGCAAGCGCCTCTCAGATGCCAGTTTGATCGGACCTTGTCTTGTATATCTGTTCATAAGGAAATATAAGCTTTGGATCACAAAAATGCTTTAA

Protein Analysis

501

Amino Acids

56.83

Weight (kDa)

5.98

Isoelectric Point (pI)

25.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012511)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 866
AccB7I CCANNNNNTGG 1 cut(s) 1018
AccI GTMKAC 2 cut(s) 354, 801
AciI CCGC 2 cut(s) 620, 1121
AclWI GGATC 2 cut(s) 453, 1493
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 1 cut(s) 905
AfaI GTAC 2 cut(s) 969, 1256
AfiI CCNNNNNNNGG 5 cut(s) 102, 325, 529, 1018, 1165
AgeI ACCGGT 1 cut(s) 318
AgsI TTSAA 7 cut(s) 187, 197, 263, 553, 646, 790, 874
AjnI CCWGG 1 cut(s) 1035
AjuI GAANNNNNNNTTGG 2 cut(s) 489, 521
AluBI AGCT 7 cut(s) 343, 807, 827, 860, 902, 1346, 1480
AluI AGCT 7 cut(s) 343, 807, 827, 860, 902, 1346, 1480
Alw26I GTCTC 3 cut(s) 77, 165, 431
AlwI GGATC 2 cut(s) 453, 1493
AlwNI CAGNNNCTG 1 cut(s) 211
AoxI GGCC 4 cut(s) 327, 698, 1071, 1167
ApeKI GCWGC 4 cut(s) 58, 1283, 1343, 1351
ApoI RAATTY 1 cut(s) 905
AsiGI ACCGGT 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 1003
AspLEI GCGC 4 cut(s) 91, 391, 867, 1419
AspS9I GGNCC 4 cut(s) 202, 698, 1123, 1442
AsuC2I CCSGG 2 cut(s) 425, 1325
AsuHPI GGTGA 5 cut(s) 251, 592, 617, 775, 997
AvaII GGWCC 3 cut(s) 202, 1123, 1442
BaeGI GKGCMC 1 cut(s) 1325
BbsI GAAGAC 1 cut(s) 678
BbvI GCAGC 4 cut(s) 70, 1270, 1338, 1355
BccI CCATC 7 cut(s) 436, 565, 595, 677, 721, 956, 1154
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 1037
BcnI CCSGG 2 cut(s) 425, 1325
BcoDI GTCTC 3 cut(s) 77, 165, 431
BfaI CTAG 2 cut(s) 114, 216
BfmI CTRYAG 4 cut(s) 742, 802, 1176, 1284
BfoI RGCGCY 1 cut(s) 1420
BglII AGATCT 1 cut(s) 949
BisI GCNGC 4 cut(s) 59, 1284, 1344, 1352
BlsI GCNGC 4 cut(s) 60, 1285, 1345, 1353
Bme1390I CCNGG 3 cut(s) 425, 1037, 1325
Bme18I GGWCC 3 cut(s) 202, 1123, 1442
BmgT120I GGNCC 4 cut(s) 202, 698, 1123, 1442
BmiI GGNNCC 3 cut(s) 288, 410, 1034
BmrFI CCNGG 3 cut(s) 425, 1037, 1325
BmsI GCATC 5 cut(s) 14, 1108, 1270, 1380, 1417
BpiI GAAGAC 1 cut(s) 678
Bpu10I CCTNAGC 1 cut(s) 1361
BpuEI CTTGAG 3 cut(s) 323, 413, 1088
BpuMI CCSGG 2 cut(s) 425, 1325
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 76, 1012
BsaWI WCCGGW 1 cut(s) 318
Bsc4I CCNNNNNNNGG 5 cut(s) 102, 325, 529, 1018, 1165
Bse118I RCCGGY 1 cut(s) 318
Bse1I ACTGG 5 cut(s) 205, 709, 1170, 1209, 1431
Bse3DI GCAATG 3 cut(s) 813, 825, 1047
BseBI CCWGG 1 cut(s) 1037
BseDI CCNNGG 2 cut(s) 76, 1012
BseGI GGATG 3 cut(s) 235, 517, 1371
BseLI CCNNNNNNNGG 5 cut(s) 102, 325, 529, 1018, 1165
BseMI GCAATG 3 cut(s) 813, 825, 1047
BseMII CTCAG 3 cut(s) 99, 377, 1437
BseNI ACTGG 5 cut(s) 205, 709, 1170, 1209, 1431
BseSI GKGCMC 1 cut(s) 1325
BseXI GCAGC 4 cut(s) 70, 1270, 1338, 1355
BseYI CCCAGC 1 cut(s) 890
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 4 cut(s) 329, 700, 1073, 1169
BshTI ACCGGT 1 cut(s) 318
BsiEI CGRYCG 1 cut(s) 319
BsiSI CCGG 3 cut(s) 319, 424, 1325
BslFI GGGAC 2 cut(s) 389, 1281
BslI CCNNNNNNNGG 5 cut(s) 102, 325, 529, 1018, 1165
BsmAI GTCTC 3 cut(s) 77, 165, 431
BsmBI CGTCTC 1 cut(s) 431
BsmFI GGGAC 2 cut(s) 389, 1281
BsnI GGCC 4 cut(s) 329, 700, 1073, 1169
Bso31I GGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 1325
Bsp143I GATC 4 cut(s) 445, 949, 1437, 1485
Bsp19I CCATGG 1 cut(s) 1012
BspACI CCGC 2 cut(s) 620, 1121
BspANI GGCC 4 cut(s) 329, 700, 1073, 1169
BspCNI CTCAG 3 cut(s) 98, 376, 1436
BspHI TCATGA 1 cut(s) 1024
BspLI GGNNCC 3 cut(s) 288, 410, 1034
BspMAI CTGCAG 1 cut(s) 1288
BspPI GGATC 2 cut(s) 453, 1493
BspTNI GGTCTC 1 cut(s) 77
BsrDI GCAATG 3 cut(s) 813, 825, 1047
BsrFI RCCGGY 1 cut(s) 318
BsrI ACTGG 5 cut(s) 205, 709, 1170, 1209, 1431
BssAI RCCGGY 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 76, 1012
BssMI GATC 4 cut(s) 445, 949, 1437, 1485
BssT1I CCWWGG 1 cut(s) 1012
Bst2UI CCWGG 1 cut(s) 1037
Bst4CI ACNGT 3 cut(s) 972, 1185, 1294
BstC8I GCNNGC 3 cut(s) 21, 125, 1415
BstDEI CTNAG 6 cut(s) 85, 363, 773, 1247, 1361, 1423
BstDSI CCRYGG 2 cut(s) 76, 1012
BstEII GGTNACC 1 cut(s) 1204
BstENI CCTNNNNNAGG 1 cut(s) 100
BstF5I GGATG 3 cut(s) 235, 517, 1371
BstH2I RGCGCY 1 cut(s) 1420
BstHHI GCGC 4 cut(s) 91, 391, 867, 1419
BstKTI GATC 4 cut(s) 448, 952, 1440, 1488
BstMAI GTCTC 3 cut(s) 77, 165, 431
BstMBI GATC 4 cut(s) 445, 949, 1437, 1485
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 3 cut(s) 824, 1151, 1357
BstNI CCWGG 1 cut(s) 1037
BstPI GGTNACC 1 cut(s) 1204
BstSCI CCNGG 3 cut(s) 423, 1035, 1323
BstSFI CTRYAG 4 cut(s) 742, 802, 1176, 1284
BstSLI GKGCMC 1 cut(s) 1325
BstV1I GCAGC 4 cut(s) 70, 1270, 1338, 1355
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 2 cut(s) 445, 949
BstXI CCANNNNNNTGG 1 cut(s) 1382
BstYI RGATCY 2 cut(s) 445, 949
BsuRI GGCC 4 cut(s) 329, 700, 1073, 1169
BtgI CCRYGG 2 cut(s) 76, 1012
BtsCI GGATG 3 cut(s) 235, 517, 1371
BtsIMutI CAGTG 2 cut(s) 759, 1177
Cac8I GCNNGC 3 cut(s) 21, 125, 1415
CaiI CAGNNNCTG 1 cut(s) 211
CciI TCATGA 1 cut(s) 1024
CfoI GCGC 4 cut(s) 91, 391, 867, 1419
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 4 cut(s) 202, 698, 1123, 1442
Csp6I GTAC 2 cut(s) 968, 1255
CspAI ACCGGT 1 cut(s) 318
CviAII CATG 7 cut(s) 381, 535, 568, 1013, 1025, 1061, 1239
CviQI GTAC 2 cut(s) 968, 1255
DdeI CTNAG 6 cut(s) 85, 363, 773, 1247, 1361, 1423
DpnI GATC 4 cut(s) 447, 951, 1439, 1487
DpnII GATC 4 cut(s) 445, 949, 1437, 1485
EaeI YGGCCR 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 1012
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 3 cut(s) 202, 1123, 1442
Eco91I GGTNACC 1 cut(s) 1204
EcoNI CCTNNNNNAGG 1 cut(s) 100
EcoO65I GGTNACC 1 cut(s) 1204
EcoRII CCWGG 1 cut(s) 1035
EcoT14I CCWWGG 1 cut(s) 1012
ErhI CCWWGG 1 cut(s) 1012
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 7 cut(s) 384, 538, 571, 1016, 1028, 1064, 1242
FaqI GGGAC 2 cut(s) 389, 1281
FatI CATG 7 cut(s) 380, 534, 567, 1012, 1024, 1060, 1238
FblI GTMKAC 2 cut(s) 354, 801
Fnu4HI GCNGC 4 cut(s) 59, 1284, 1344, 1352
FokI GGATG 3 cut(s) 242, 524, 1358
Fsp4HI GCNGC 4 cut(s) 59, 1284, 1344, 1352
FspBI CTAG 2 cut(s) 114, 216
FspI TGCGCA 1 cut(s) 866
GlaI GCGC 4 cut(s) 90, 390, 866, 1418
GluI GCNGC 4 cut(s) 59, 1284, 1344, 1352
GsaI CCCAGC 1 cut(s) 894
HaeII RGCGCY 1 cut(s) 1420
HaeIII GGCC 4 cut(s) 329, 700, 1073, 1169
HapII CCGG 3 cut(s) 319, 424, 1325
HhaI GCGC 4 cut(s) 91, 391, 867, 1419
Hin1II CATG 7 cut(s) 384, 538, 571, 1016, 1028, 1064, 1242
Hin6I GCGC 4 cut(s) 89, 389, 865, 1417
HinP1I GCGC 4 cut(s) 89, 389, 865, 1417
HincII GTYRAC 2 cut(s) 30, 520
HindII GTYRAC 2 cut(s) 30, 520
HindIII AAGCTT 2 cut(s) 858, 1478
HinfI GANTC 8 cut(s) 117, 377, 487, 749, 766, 779, 988, 1379
HpaII CCGG 3 cut(s) 319, 424, 1325
HphI GGTGA 5 cut(s) 251, 592, 617, 775, 997
Hpy166II GTNNAC 5 cut(s) 30, 355, 520, 532, 802
Hpy188I TCNGA 8 cut(s) 295, 413, 492, 667, 949, 961, 1426, 1442
Hpy188III TCNNGA 8 cut(s) 170, 211, 302, 365, 478, 934, 992, 1025
Hpy8I GTNNAC 5 cut(s) 30, 355, 520, 532, 802
Hpy99I CGWCG 2 cut(s) 224, 227
HpyAV CCTTC 5 cut(s) 236, 533, 571, 604, 868
HpyCH4III ACNGT 3 cut(s) 972, 1185, 1294
HpyCH4IV ACGT 1 cut(s) 649
HpyCH4V TGCA 6 cut(s) 47, 123, 818, 1286, 1354, 1413
HpyF10VI GCNNNNNNNGC 3 cut(s) 824, 1151, 1357
HpyF3I CTNAG 6 cut(s) 85, 363, 773, 1247, 1361, 1423
HpySE526I ACGT 1 cut(s) 649
Hsp92II CATG 7 cut(s) 384, 538, 571, 1016, 1028, 1064, 1242
HspAI GCGC 4 cut(s) 89, 389, 865, 1417
Kzo9I GATC 4 cut(s) 445, 949, 1437, 1485
LmnI GCTCC 3 cut(s) 271, 414, 1038
Lsp1109I GCAGC 4 cut(s) 70, 1270, 1338, 1355
LweI GCATC 5 cut(s) 14, 1108, 1270, 1380, 1417
MaeI CTAG 2 cut(s) 114, 216
MaeII ACGT 1 cut(s) 649
MaeIII GTNAC 2 cut(s) 336, 1204
MalI GATC 4 cut(s) 447, 951, 1439, 1487
MboI GATC 4 cut(s) 445, 949, 1437, 1485
MboII GAAGA 5 cut(s) 275, 683, 733, 944, 996
MfeI CAATTG 1 cut(s) 979
MflI RGATCY 2 cut(s) 445, 949
MhlI GDGCHC 1 cut(s) 1325
MluCI AATT 6 cut(s) 197, 266, 482, 654, 905, 979
MlyI GAGTC 1 cut(s) 371
MroXI GAANNNNTTC 1 cut(s) 1003
MseI TTAA 4 cut(s) 51, 834, 1260, 1501
MslI CAYNNNNRTG 3 cut(s) 818, 1275, 1493
MspA1I CMGCKG 2 cut(s) 827, 1346
MspI CCGG 3 cut(s) 319, 424, 1325
MspR9I CCNGG 3 cut(s) 425, 1037, 1325
MunI CAATTG 1 cut(s) 979
MvaI CCWGG 1 cut(s) 1037
MwoI GCNNNNNNNGC 3 cut(s) 824, 1151, 1357
NciI CCSGG 2 cut(s) 425, 1325
NcoI CCATGG 1 cut(s) 1012
NdeII GATC 4 cut(s) 445, 949, 1437, 1485
NlaIII CATG 7 cut(s) 384, 538, 571, 1016, 1028, 1064, 1242
NlaIV GGNNCC 3 cut(s) 288, 410, 1034
NmeAIII GCCGAG 2 cut(s) 582, 1099
NsbI TGCGCA 1 cut(s) 866
PagI TCATGA 1 cut(s) 1024
PdmI GAANNNNTTC 1 cut(s) 1003
PfeI GAWTC 7 cut(s) 117, 487, 749, 766, 779, 988, 1379
PflFI GACNNNGTC 1 cut(s) 1446
PflMI CCANNNNNTGG 1 cut(s) 1018
PinAI ACCGGT 1 cut(s) 318
PkrI GCNGC 4 cut(s) 60, 1285, 1345, 1353
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
Psp6I CCWGG 1 cut(s) 1035
PspEI GGTNACC 1 cut(s) 1204
PspFI CCCAGC 1 cut(s) 890
PspGI CCWGG 1 cut(s) 1035
PspN4I GGNNCC 3 cut(s) 288, 410, 1034
PspPI GGNCC 4 cut(s) 202, 698, 1123, 1442
PsrI GAACNNNNNNTAC 2 cut(s) 1189, 1221
PstI CTGCAG 1 cut(s) 1288
PstNI CAGNNNCTG 1 cut(s) 211
PsuI RGATCY 2 cut(s) 445, 949
PsyI GACNNNGTC 1 cut(s) 1446
PvuII CAGCTG 2 cut(s) 827, 1346
RsaI GTAC 2 cut(s) 969, 1256
RsaNI GTAC 2 cut(s) 968, 1255
RseI CAYNNNNRTG 3 cut(s) 818, 1275, 1493
SaqAI TTAA 4 cut(s) 51, 834, 1260, 1501
SatI GCNGC 4 cut(s) 59, 1284, 1344, 1352
Sau3AI GATC 4 cut(s) 445, 949, 1437, 1485
Sau96I GGNCC 4 cut(s) 202, 698, 1123, 1442
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 425, 1037, 1325
SduI GDGCHC 1 cut(s) 1325
SfaNI GCATC 5 cut(s) 14, 1108, 1270, 1380, 1417
SfcI CTRYAG 4 cut(s) 742, 802, 1176, 1284
SinI GGWCC 3 cut(s) 202, 1123, 1442
SmiMI CAYNNNNRTG 3 cut(s) 818, 1275, 1493
SmlI CTYRAG 4 cut(s) 12, 302, 392, 1067
SmoI CTYRAG 4 cut(s) 12, 302, 392, 1067
Sse9I AATT 6 cut(s) 197, 266, 482, 654, 905, 979
SsiI CCGC 2 cut(s) 620, 1121
SspMI CTAG 2 cut(s) 114, 216
StyD4I CCNGG 3 cut(s) 423, 1035, 1323
StyI CCWWGG 1 cut(s) 1012
TaaI ACNGT 3 cut(s) 972, 1185, 1294
TaiI ACGT 1 cut(s) 652
TaqI TCGA 4 cut(s) 158, 169, 429, 933
TasI AATT 6 cut(s) 197, 266, 482, 654, 905, 979
TatI WGTACW 1 cut(s) 967
TfiI GAWTC 7 cut(s) 117, 487, 749, 766, 779, 988, 1379
Tru1I TTAA 4 cut(s) 51, 834, 1260, 1501
Tru9I TTAA 4 cut(s) 51, 834, 1260, 1501
TscAI CASTG 2 cut(s) 759, 1177
TseI GCWGC 4 cut(s) 58, 1283, 1343, 1351
TspDTI ATGAA 8 cut(s) 133, 246, 326, 758, 861, 1013, 1109, 1453
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 2 cut(s) 759, 1177
Tth111I GACNNNGTC 1 cut(s) 1446
Van91I CCANNNNNTGG 1 cut(s) 1018
VpaK11BI GGWCC 3 cut(s) 202, 1123, 1442
XagI CCTNNNNNAGG 1 cut(s) 100
XapI RAATTY 1 cut(s) 905
XcmI CCANNNNNNNNNTGG 1 cut(s) 1382
XmiI GTMKAC 2 cut(s) 354, 801
XmnI GAANNNNTTC 1 cut(s) 1003
XspI CTAG 2 cut(s) 114, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.