AT2G30570

photosystem ii reaction center w

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015130
Physical Location & Seq
Reverse (-)
13019028 .. 13020311
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G30570.1

Sequence Viewer

Length: 402 bp
ATGGCTAGCTTTACTGCCTCCGCTTCCACCGTCTCCGCCGCTCGTCCGGCTCTCCTTCTCAAGCCTACCGTCGCCATCTCTGCTCCTGTTCTTGGTTTGCCTCCAATGGGTAAGAAGAAGGGAGGAGTGAGATGTTCAATGGAGACAAAGCAAGGAAACGTCTCAGTCATGGGGGCTGGAGTTTCAGCTGCAGCAACAGCTGCTTTGACGGCGGTGATGAGCAATCCCGCGATGGCTTTGGTTGATGAGAGGATGTCAACAGAAGGAACAGGATTACCCTTTGGTCTAAGCAACAACCTCTTGGGTTGGATTCTGTTTGGAGTCTTTGGTTTGATCTGGACTTTCTTCTTCGTCTACACTTCATCTCTCGAGGAGGATGAAGAATCTGGTCTTTCACTCTGA

Protein Analysis

133

Amino Acids

13.68

Weight (kDa)

5.29

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbW PF07123 1 - 133 3.1e-57 Photosystem II reaction centre W protein (PsbW)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30570
fragaria_vesca FvH4_2g22470
malus_domestica MD05G1205000.v1.1 MD10G1192100.v1.1
prunus_persica Prupe.8G231600_v2.0.a1
pyrus_communis pycom05g19120 pycom10g16600
rosa_chinensis RchiOBHm_Chr6g0289411
rosa_laevigata RLG00000012306
rosa_multiflora Rmu_sc0001527.1_g000032
rosa_rugosa Rorug06G0203300
rosa_samantha Rh6AG314300 Rh6BG321900 Rh6CG328100 Rh6DG313800
rosa_wichuraiana Rw6G027170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 354
AccII CGCG 1 cut(s) 230
AciI CCGC 5 cut(s) 21, 36, 39, 212, 228
AfiI CCNNNNNNNGG 2 cut(s) 92, 107
AgsI TTSAA 1 cut(s) 138
AluBI AGCT 3 cut(s) 9, 188, 200
AluI AGCT 3 cut(s) 9, 188, 200
Alw26I GTCTC 3 cut(s) 37, 137, 166
Ama87I CYCGRG 1 cut(s) 368
ApeKI GCWGC 3 cut(s) 188, 191, 200
AsuHPI GGTGA 1 cut(s) 226
AsuNHI GCTAGC 1 cut(s) 5
AvaI CYCGRG 1 cut(s) 368
BbvI GCAGC 3 cut(s) 175, 187, 203
BccI CCATC 2 cut(s) 83, 226
BceAI ACGGC 1 cut(s) 225
BcoDI GTCTC 3 cut(s) 37, 137, 166
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 189
BisI GCNGC 4 cut(s) 39, 189, 192, 201
BlsI GCNGC 4 cut(s) 40, 190, 193, 202
BmeT110I CYCGRG 1 cut(s) 368
BmtI GCTAGC 1 cut(s) 9
BpmI CTGGAG 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 44
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 107
BseGI GGATG 2 cut(s) 258, 382
BseLI CCNNNNNNNGG 2 cut(s) 92, 107
BseMII CTCAG 1 cut(s) 177
BseRI GAGGAG 2 cut(s) 138, 386
BseXI GCAGC 3 cut(s) 175, 187, 203
Bsh1236I CGCG 1 cut(s) 230
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 92, 107
BsmAI GTCTC 3 cut(s) 37, 137, 166
BsmBI CGTCTC 2 cut(s) 37, 166
BsoBI CYCGRG 1 cut(s) 368
Bsp143I GATC 1 cut(s) 333
BspACI CCGC 5 cut(s) 21, 36, 39, 212, 228
BspCNI CTCAG 1 cut(s) 176
BspFNI CGCG 1 cut(s) 230
BspMAI CTGCAG 1 cut(s) 193
BspOI GCTAGC 1 cut(s) 9
BsrBI CCGCTC 1 cut(s) 41
BssMI GATC 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 31, 70
BstAPI GCANNNNNTGC 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 163, 287
BstF5I GGATG 2 cut(s) 258, 382
BstFNI CGCG 1 cut(s) 230
BstKTI GATC 1 cut(s) 336
BstMAI GTCTC 3 cut(s) 37, 137, 166
BstMBI GATC 1 cut(s) 333
BstMWI GCNNNNNNNGC 5 cut(s) 47, 80, 197, 200, 209
BstSFI CTRYAG 1 cut(s) 189
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 3 cut(s) 175, 187, 203
BtgZI GCGATG 1 cut(s) 245
BtsCI GGATG 2 cut(s) 258, 382
Cac8I GCNNGC 1 cut(s) 7
CviAII CATG 1 cut(s) 169
CviJI RGCY 8 cut(s) 5, 9, 50, 64, 176, 188, 200, 236
CviKI_1 RGCY 8 cut(s) 5, 9, 50, 64, 176, 188, 200, 236
DdeI CTNAG 2 cut(s) 163, 287
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
EciI GGCGGA 1 cut(s) 25
Eco88I CYCGRG 1 cut(s) 368
Esp3I CGTCTC 2 cut(s) 37, 166
FaeI CATG 1 cut(s) 172
FaiI YATR 1 cut(s) 170
FatI CATG 1 cut(s) 168
FauI CCCGC 1 cut(s) 235
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 4 cut(s) 39, 189, 192, 201
FokI GGATG 2 cut(s) 265, 389
Fsp4HI GCNGC 4 cut(s) 39, 189, 192, 201
FspBI CTAG 1 cut(s) 6
GluI GCNGC 4 cut(s) 39, 189, 192, 201
GsuI CTGGAG 1 cut(s) 198
HapII CCGG 1 cut(s) 47
Hin1II CATG 1 cut(s) 172
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HinfI GANTC 3 cut(s) 310, 321, 383
HpaII CCGG 1 cut(s) 47
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 2 cut(s) 258, 355
Hpy188I TCNGA 1 cut(s) 401
Hpy188III TCNNGA 2 cut(s) 337, 368
Hpy8I GTNNAC 2 cut(s) 258, 355
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 3 cut(s) 65, 112, 257
HpyCH4III ACNGT 2 cut(s) 31, 70
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 80, 197, 200, 209
HpyF3I CTNAG 2 cut(s) 163, 287
HpySE526I ACGT 1 cut(s) 159
Hsp92II CATG 1 cut(s) 172
Kzo9I GATC 1 cut(s) 333
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 6 cut(s) 60, 99, 162, 255, 322, 372
Lsp1109I GCAGC 3 cut(s) 175, 187, 203
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 159
MalI GATC 1 cut(s) 335
MbiI CCGCTC 1 cut(s) 41
MboI GATC 1 cut(s) 333
MboII GAAGA 4 cut(s) 127, 337, 340, 392
MlyI GAGTC 1 cut(s) 330
MmeI TCCRAC 1 cut(s) 287
MnlI CCTC 7 cut(s) 28, 111, 116, 243, 308, 364, 367
MspA1I CMGCKG 2 cut(s) 188, 200
MspI CCGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 5 cut(s) 47, 80, 197, 200, 209
NdeII GATC 1 cut(s) 333
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 172
PaeR7I CTCGAG 1 cut(s) 368
PfeI GAWTC 2 cut(s) 310, 383
PkrI GCNGC 4 cut(s) 40, 190, 193, 202
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
PstI CTGCAG 1 cut(s) 193
PvuII CAGCTG 2 cut(s) 188, 200
SatI GCNGC 4 cut(s) 39, 189, 192, 201
Sau3AI GATC 1 cut(s) 333
SchI GAGTC 1 cut(s) 330
SetI ASST 5 cut(s) 11, 162, 190, 202, 300
SfcI CTRYAG 1 cut(s) 189
Sfr274I CTCGAG 1 cut(s) 368
SlaI CTCGAG 1 cut(s) 368
SmlI CTYRAG 2 cut(s) 59, 368
SmoI CTYRAG 2 cut(s) 59, 368
SsiI CCGC 5 cut(s) 21, 36, 39, 212, 228
SspMI CTAG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 31, 70
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 369
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 2 cut(s) 310, 383
TseI GCWGC 3 cut(s) 188, 191, 200
TspDTI ATGAA 2 cut(s) 351, 393
XhoI CTCGAG 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 354
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.