Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0015130

Physical Location & Seq

Genomic Coordinates Forward (+)

20617834 .. 20618852

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G231600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAAACTGCAACTTCTGTCATACAAATCAGTTCCATTGCAGATTGCCCATAAGCTTCTGAAGTTTCCCACCAATTCTCTTTCAAAGCTGAAGATAATGGCAACCATTACTGCTAGCACTCCAACCTCATCAATCACCAGGGCAAGTCTGGTGCACAAGCCATCTGTTGGGGCTCCATCCGCAACTGTGTTGGCTTTGCCATCACTTGCAAGGAAGGGGAAAGTGGGTTGTTCCATGGAGGGAAAGAAGGAGAGCAGCAACTCAAAGATGGGCAAGGGTGCATCTTTGGCTGCAGCAGCTATGGCTGCAACCATGTCAAGCCCAGCCATGGCTTTGGTGGATGACAGATTGAGCACAGAAGGAACAGGGCTTCCCTTTGGCTTGAGCAACAACATTCTTGGCTGGATCCTCTTTGGTGTGTTTGGCCTCATCTGGACCTTTTACTTCATCTACACTTCCTCTCTGGAAGAGGATGAAGAGTCAGGATTGTCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0010109 GO:0016020 GO:0019222 GO:0031323 GO:0031976 GO:0031984 GO:0034357 GO:0042548 GO:0042549 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055035 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbW

Protein Analysis

166

Amino Acids

17.39

Weight (kDa)

9.55

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30570
fragaria_vesca	FvH4_2g22470
malus_domestica	MD05G1205000.v1.1 MD10G1192100.v1.1
prunus_persica	Prupe.8G231600_v2.0.a1
pyrus_communis	pycom05g19120 pycom10g16600
rosa_chinensis	RchiOBHm_Chr6g0289411
rosa_laevigata	RLG00000012306
rosa_multiflora	Rmu_sc0001527.1_g000032
rosa_rugosa	Rorug06G0203300
rosa_samantha	Rh6AG314300 Rh6BG321900 Rh6CG328100 Rh6DG313800
rosa_wichuraiana	Rw6G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	2 cut(s)	400, 413
AcuI	CTGAAG	2 cut(s)	80, 110
AfiI	CCNNNNNNNGG	2 cut(s)	167, 328
AgsI	TTSAA	1 cut(s)	84
AjnI	CCWGG	1 cut(s)	137
AloI	GAACNNNNNNTCC	2 cut(s)	355, 387
AluBI	AGCT	3 cut(s)	55, 88, 299
AluI	AGCT	3 cut(s)	55, 88, 299
Alw21I	GWGCWC	2 cut(s)	156, 356
Alw44I	GTGCAC	1 cut(s)	152
AlwI	GGATC	2 cut(s)	400, 413
AoxI	GGCC	1 cut(s)	424
ApaLI	GTGCAC	1 cut(s)	152
ApeKI	GCWGC	5 cut(s)	255, 290, 293, 296, 305
AspS9I	GGNCC	1 cut(s)	435
AsuHPI	GGTGA	1 cut(s)	127
AsuNHI	GCTAGC	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	156
BamHI	GGATCC	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	175
Bbv12I	GWGCWC	2 cut(s)	156, 356
BbvI	GCAGC	5 cut(s)	267, 277, 292, 305, 308
BccI	CCATC	4 cut(s)	169, 184, 208, 262
BciT130I	CCWGG	1 cut(s)	139
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	5 cut(s)	256, 291, 294, 297, 306
BlsI	GCNGC	5 cut(s)	257, 292, 295, 298, 307
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	435
BmgT120I	GGNCC	1 cut(s)	435
BmiI	GGNNCC	2 cut(s)	174, 407
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	1 cut(s)	290
BmtI	GCTAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	403
BsaJI	CCNNGG	3 cut(s)	138, 234, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 328
Bse3DI	GCAATG	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	3 cut(s)	138, 234, 327
BseGI	GGATG	3 cut(s)	176, 346, 478
BseLI	CCNNNNNNNGG	2 cut(s)	167, 328
BseMI	GCAATG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	5 cut(s)	267, 277, 292, 305, 308
BseYI	CCCAGC	1 cut(s)	322
BshFI	GGCC	1 cut(s)	426
BsiHKAI	GWGCWC	2 cut(s)	156, 356
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	2 cut(s)	167, 328
BsmFI	GGGAC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	426
Bsp1286I	GDGCHC	3 cut(s)	156, 175, 356
Bsp143I	GATC	1 cut(s)	405
Bsp19I	CCATGG	2 cut(s)	234, 327
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	1 cut(s)	426
BspLI	GGNNCC	2 cut(s)	174, 407
BspMAI	CTGCAG	1 cut(s)	295
BspOI	GCTAGC	1 cut(s)	117
BspPI	GGATC	2 cut(s)	400, 413
BsrDI	GCAATG	1 cut(s)	35
BssECI	CCNNGG	3 cut(s)	138, 234, 327
BssMI	GATC	1 cut(s)	405
BssT1I	CCWWGG	2 cut(s)	234, 327
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	187
Bst6I	CTCTTC	2 cut(s)	462, 471
BstC8I	GCNNGC	1 cut(s)	115
BstDSI	CCRYGG	2 cut(s)	234, 327
BstF5I	GGATG	3 cut(s)	176, 346, 478
BstKTI	GATC	1 cut(s)	408
BstMBI	GATC	1 cut(s)	405
BstMWI	GCNNNNNNNGC	5 cut(s)	179, 287, 296, 302, 305
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	156
BstV1I	GCAGC	5 cut(s)	267, 277, 292, 305, 308
BstX2I	RGATCY	1 cut(s)	405
BstXI	CCANNNNNNTGG	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	405
BsuRI	GGCC	1 cut(s)	426
BtgI	CCRYGG	2 cut(s)	234, 327
BtsCI	GGATG	3 cut(s)	176, 346, 478
Cac8I	GCNNGC	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	435
CviAII	CATG	3 cut(s)	235, 313, 328
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
Eam1104I	CTCTTC	2 cut(s)	462, 471
EarI	CTCTTC	2 cut(s)	462, 471
Eco130I	CCWWGG	2 cut(s)	234, 327
Eco24I	GRGCYC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	435
Eco57I	CTGAAG	2 cut(s)	80, 110
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	2 cut(s)	234, 327
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	2 cut(s)	234, 327
FaeI	CATG	3 cut(s)	238, 316, 331
FaiI	YATR	6 cut(s)	22, 51, 236, 302, 314, 329
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	3 cut(s)	234, 312, 327
Fnu4HI	GCNGC	5 cut(s)	256, 291, 294, 297, 306
FokI	GGATG	3 cut(s)	163, 353, 485
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	5 cut(s)	256, 291, 294, 297, 306
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	5 cut(s)	256, 291, 294, 297, 306
GsaI	CCCAGC	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	426
Hin1II	CATG	3 cut(s)	238, 316, 331
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	1 cut(s)	479
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	60, 497
Hpy188III	TCNNGA	3 cut(s)	433, 464, 483
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	208, 241, 353
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4V	TGCA	7 cut(s)	10, 40, 154, 209, 281, 293, 308
HpyF10VI	GCNNNNNNNGC	5 cut(s)	179, 287, 296, 302, 305
Hsp92II	CATG	3 cut(s)	238, 316, 331
Kzo9I	GATC	1 cut(s)	405
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	9 cut(s)	124, 134, 151, 336, 351, 388, 418, 449, 468
Lsp1109I	GCAGC	5 cut(s)	267, 277, 292, 305, 308
LweI	GCATC	1 cut(s)	290
MaeI	CTAG	1 cut(s)	114
MalI	GATC	1 cut(s)	407
MboI	GATC	1 cut(s)	405
MboII	GAAGA	3 cut(s)	103, 479, 488
MflI	RGATCY	1 cut(s)	405
MhlI	GDGCHC	3 cut(s)	156, 175, 356
MluCI	AATT	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	6 cut(s)	136, 232, 419, 437, 463, 469
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	5 cut(s)	179, 287, 296, 302, 305
NcoI	CCATGG	2 cut(s)	234, 327
NdeII	GATC	1 cut(s)	405
NheI	GCTAGC	1 cut(s)	113
NlaIII	CATG	3 cut(s)	238, 316, 331
NlaIV	GGNNCC	2 cut(s)	174, 407
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	5 cut(s)	257, 292, 295, 298, 307
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	174, 407
PspPI	GGNCC	1 cut(s)	435
PstI	CTGCAG	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	405
SatI	GCNGC	5 cut(s)	256, 291, 294, 297, 306
Sau3AI	GATC	1 cut(s)	405
Sau96I	GGNCC	1 cut(s)	435
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	3 cut(s)	156, 175, 356
SetI	ASST	5 cut(s)	57, 90, 128, 301, 440
SfaNI	GCATC	1 cut(s)	290
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	382
SmoI	CTYRAG	1 cut(s)	382
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	1 cut(s)	180
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	2 cut(s)	234, 327
TaaI	ACNGT	1 cut(s)	187
TasI	AATT	1 cut(s)	73
TseI	GCWGC	5 cut(s)	255, 290, 293, 296, 305
TspDTI	ATGAA	3 cut(s)	17, 436, 489
Van91I	CCANNNNNTGG	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	435
XcmI	CCANNNNNNNNNTGG	2 cut(s)	145, 334
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.