Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0015130

Physical Location & Seq

Genomic Coordinates Forward (+)

33449624 .. 33450632

Gene Structure 1009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1205000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCAACCATTACTGCTAGCTCTGCAGCCTCGTCGGTCACTAGGGCAAGCCTTGTGCACAAGCCATCTGTTGGGGCTCCATCCTCAACTGTTTTGGCTTTGCCGTCACTTGCAAGAAAGGGAAGAGTGAGCTGCTCCATGGAAGGAAAGAAGGAGAGCAACTCAAACATGGCCAAGGGTGCATCTTTGGCGGCCGCAGCTATGGCGGCGACCATGTCAAGCCCGGCCATGGCTTTGGTGGACGATAGGCTGAGCACCGAGGGAACAGGGCTTCCATTCGGATTGAGCAACAACCTTCTTGGTTGGATCCTCTTTGGTGTGTTTGGTCTCATTTGGACCTTCTACTTTATCTATACTTCCTCCCTCGAAGAGGACGAAGAGTCAGGATTGTCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0010109 GO:0016020 GO:0019222 GO:0031323 GO:0031976 GO:0031984 GO:0034357 GO:0042548 GO:0042549 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055035 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbW

Protein Analysis

133

Amino Acids

13.63

Weight (kDa)

5.73

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbW	PF07123	1 - 132	4.4e-62	Photosystem II reaction centre W protein (PsbW)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30570
fragaria_vesca	FvH4_2g22470
malus_domestica	MD05G1205000.v1.1 MD10G1192100.v1.1
prunus_persica	Prupe.8G231600_v2.0.a1
pyrus_communis	pycom05g19120 pycom10g16600
rosa_chinensis	RchiOBHm_Chr6g0289411
rosa_laevigata	RLG00000012306
rosa_multiflora	Rmu_sc0001527.1_g000032
rosa_rugosa	Rorug06G0203300
rosa_samantha	Rh6AG314300 Rh6BG321900 Rh6CG328100 Rh6DG313800
rosa_wichuraiana	Rw6G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	71
AciI	CCGC	3 cut(s)	191, 195, 206
AclWI	GGATC	2 cut(s)	301, 314
AcoI	YGGCCR	3 cut(s)	171, 192, 225
AfiI	CCNNNNNNNGG	3 cut(s)	71, 229, 370
AhdI	GACNNNNNGTC	1 cut(s)	379
AloI	GAACNNNNNNTCC	2 cut(s)	256, 288
AluBI	AGCT	3 cut(s)	21, 132, 200
AluI	AGCT	3 cut(s)	21, 132, 200
Alw21I	GWGCWC	2 cut(s)	60, 257
Alw26I	GTCTC	1 cut(s)	332
Alw44I	GTGCAC	1 cut(s)	56
AlwI	GGATC	2 cut(s)	301, 314
AoxI	GGCC	3 cut(s)	171, 192, 225
ApaLI	GTGCAC	1 cut(s)	56
ApeKI	GCWGC	3 cut(s)	26, 132, 197
AspS9I	GGNCC	1 cut(s)	336
AsuC2I	CCSGG	1 cut(s)	224
AsuNHI	GCTAGC	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	2 cut(s)	60, 257
BbvI	GCAGC	3 cut(s)	38, 119, 209
BccI	CCATC	2 cut(s)	73, 88
BceAI	ACGGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	15, 49
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	2 cut(s)	18, 42
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	6 cut(s)	27, 133, 192, 195, 198, 207
BlpI	GCTNAGC	1 cut(s)	251
BlsI	GCNGC	6 cut(s)	28, 134, 193, 196, 199, 208
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	336
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	2 cut(s)	78, 308
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	191
BmtI	GCTAGC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
Bpu1102I	GCTNAGC	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	4 cut(s)	138, 174, 228, 258
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 229, 370
BseDI	CCNNGG	4 cut(s)	138, 174, 228, 258
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	3 cut(s)	71, 229, 370
BseMII	CTCAG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	60
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	38, 119, 209
Bsh1285I	CGRYCG	1 cut(s)	195
BshFI	GGCC	3 cut(s)	173, 194, 227
BsiEI	CGRYCG	1 cut(s)	195
BsiHKAI	GWGCWC	2 cut(s)	60, 257
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	3 cut(s)	71, 229, 370
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	376
BsnI	GGCC	3 cut(s)	173, 194, 227
Bso31I	GGTCTC	1 cut(s)	332
Bsp1286I	GDGCHC	3 cut(s)	60, 79, 257
Bsp143I	GATC	1 cut(s)	306
Bsp1720I	GCTNAGC	1 cut(s)	251
Bsp19I	CCATGG	2 cut(s)	138, 228
BspACI	CCGC	3 cut(s)	191, 195, 206
BspANI	GGCC	3 cut(s)	173, 194, 227
BspCNI	CTCAG	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	78, 308
BspMAI	CTGCAG	1 cut(s)	28
BspOI	GCTAGC	1 cut(s)	21
BspPI	GGATC	2 cut(s)	301, 314
BspTNI	GGTCTC	1 cut(s)	332
BssECI	CCNNGG	4 cut(s)	138, 174, 228, 258
BssMI	GATC	1 cut(s)	306
BssT1I	CCWWGG	3 cut(s)	138, 174, 228
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	3 cut(s)	118, 363, 372
BstC8I	GCNNGC	2 cut(s)	19, 49
BstDEI	CTNAG	1 cut(s)	251
BstDSI	CCRYGG	2 cut(s)	138, 228
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	1 cut(s)	80
BstKTI	GATC	1 cut(s)	309
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	306
BstMCI	CGRYCG	1 cut(s)	195
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 179, 188, 197, 203, 206
BstSCI	CCNGG	1 cut(s)	222
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	60
BstV1I	GCAGC	3 cut(s)	38, 119, 209
BstX2I	RGATCY	1 cut(s)	306
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	306
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	173, 194, 227
BtgI	CCRYGG	2 cut(s)	138, 228
BtsCI	GGATG	1 cut(s)	80
Cac8I	GCNNGC	2 cut(s)	19, 49
CciNI	GCGGCCGC	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	336
CviAII	CATG	4 cut(s)	139, 169, 214, 229
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
DriI	GACNNNNNGTC	1 cut(s)	379
EaeI	YGGCCR	3 cut(s)	171, 192, 225
EagI	CGGCCG	1 cut(s)	192
Eam1104I	CTCTTC	3 cut(s)	118, 363, 372
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EarI	CTCTTC	3 cut(s)	118, 363, 372
EclXI	CGGCCG	1 cut(s)	192
Eco130I	CCWWGG	3 cut(s)	138, 174, 228
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	336
Eco52I	CGGCCG	1 cut(s)	192
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoT14I	CCWWGG	3 cut(s)	138, 174, 228
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	3 cut(s)	138, 174, 228
FaeI	CATG	4 cut(s)	142, 172, 217, 232
FaiI	YATR	6 cut(s)	140, 170, 203, 215, 230, 354
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	4 cut(s)	138, 168, 213, 228
Fnu4HI	GCNGC	6 cut(s)	27, 133, 192, 195, 198, 207
FokI	GGATG	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	6 cut(s)	27, 133, 192, 195, 198, 207
FspBI	CTAG	2 cut(s)	18, 42
GluI	GCNGC	6 cut(s)	27, 133, 192, 195, 198, 207
HaeIII	GGCC	3 cut(s)	173, 194, 227
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	4 cut(s)	142, 172, 217, 232
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	58, 241
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	1 cut(s)	384
Hpy8I	GTNNAC	2 cut(s)	58, 241
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	4 cut(s)	137, 145, 305, 349
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	4 cut(s)	26, 58, 113, 182
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 179, 188, 197, 203, 206
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	4 cut(s)	142, 172, 217, 232
Kzo9I	GATC	1 cut(s)	306
LmnI	GCTCC	2 cut(s)	82, 140
LpnPI	CCDG	3 cut(s)	237, 252, 369
Lsp1109I	GCAGC	3 cut(s)	38, 119, 209
LweI	GCATC	1 cut(s)	191
MaeI	CTAG	2 cut(s)	18, 42
MaeIII	GTNAC	2 cut(s)	37, 105
MalI	GATC	1 cut(s)	308
MboI	GATC	1 cut(s)	306
MboII	GAAGA	3 cut(s)	135, 380, 389
MflI	RGATCY	1 cut(s)	306
MhlI	GDGCHC	3 cut(s)	60, 79, 257
MlsI	TGGCCA	1 cut(s)	173
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	7 cut(s)	40, 94, 253, 320, 364, 370, 374
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	6 cut(s)	23, 179, 188, 197, 203, 206
NciI	CCSGG	1 cut(s)	224
NcoI	CCATGG	2 cut(s)	138, 228
NdeII	GATC	1 cut(s)	306
NheI	GCTAGC	1 cut(s)	17
NlaIII	CATG	4 cut(s)	142, 172, 217, 232
NlaIV	GGNNCC	2 cut(s)	78, 308
NmuCI	GTSAC	2 cut(s)	37, 105
NotI	GCGGCCGC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PflFI	GACNNNGTC	1 cut(s)	214
PflMI	CCANNNNNTGG	1 cut(s)	71
PkrI	GCNGC	6 cut(s)	28, 134, 193, 196, 199, 208
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	78, 308
PspPI	GGNCC	1 cut(s)	336
PstI	CTGCAG	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	306
PsyI	GACNNNGTC	1 cut(s)	214
SatI	GCNGC	6 cut(s)	27, 133, 192, 195, 198, 207
Sau3AI	GATC	1 cut(s)	306
Sau96I	GGNCC	1 cut(s)	336
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	3 cut(s)	60, 79, 257
SetI	ASST	5 cut(s)	23, 134, 202, 297, 341
SfaNI	GCATC	1 cut(s)	191
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	336
SsiI	CCGC	3 cut(s)	191, 195, 206
SspMI	CTAG	2 cut(s)	18, 42
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	3 cut(s)	138, 174, 228
TaaI	ACNGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	366
TaqII	GACCGA	1 cut(s)	25
TauI	GCSGC	3 cut(s)	194, 197, 209
TseFI	GTSAC	2 cut(s)	37, 105
TseI	GCWGC	3 cut(s)	26, 132, 197
Tsp45I	GTSAC	2 cut(s)	37, 105
Tth111I	GACNNNGTC	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	71
VneI	GTGCAC	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	336
XagI	CCTNNNNNAGG	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XspI	CTAG	2 cut(s)	18, 42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.