pycom05g19120

Photosystem II reaction center W protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0015130
Physical Location & Seq
Forward (+)
22022962 .. 22023640
679 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19120.2

Sequence Viewer

Length: 399 bp
ATGGCAACCATTACTGCTAGCTCTGCAGCCTCGACGGTCACTAGGGCAAGCCTTGTGCACAAGCCATCCGTTGGGGCTCCATCCTCAACTGTTTTGGCTTTGCCGTCACTTGCAAGAAAGGGAAGAGTGAGCTGCTCCATGGAAGGAAAAAAGGAGAGCAACTCAAACATAGCCAAGGGTGCATCTTTGGCGGCCGCAGCTATGGCGGCGACCATGTCAAGTCCCGCCATGGCTTTGGTGGACGATAGGTTGAGCACCGAGGGAACAGGGCTTCCCTTCGGATTGAGCAACAACCTTCTTGGTTGGATCCTCTTTGGTGTGTTTGGTCTCATTTGGATCTTCTACTTTATCTATACTTCCTCCCTCGAAGAGGACGAAGAGTCAGGATTGTCCCTCTAA

Protein Analysis

133

Amino Acids

13.63

Weight (kDa)

5.73

Isoelectric Point (pI)

51.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G30570
fragaria_vesca FvH4_2g22470
malus_domestica MD05G1205000.v1.1 MD10G1192100.v1.1
prunus_persica Prupe.8G231600_v2.0.a1
pyrus_communis pycom05g19120 pycom10g16600
rosa_chinensis RchiOBHm_Chr6g0289411
rosa_laevigata RLG00000012306
rosa_multiflora Rmu_sc0001527.1_g000032
rosa_rugosa Rorug06G0203300
rosa_samantha Rh6AG314300 Rh6BG321900 Rh6CG328100 Rh6DG313800
rosa_wichuraiana Rw6G027170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 71
AciI CCGC 4 cut(s) 191, 195, 206, 225
AclWI GGATC 3 cut(s) 301, 314, 344
AcoI YGGCCR 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 71, 370
AhdI GACNNNNNGTC 1 cut(s) 379
AloI GAACNNNNNNTCC 2 cut(s) 256, 288
AluBI AGCT 3 cut(s) 21, 132, 200
AluI AGCT 3 cut(s) 21, 132, 200
Alw21I GWGCWC 2 cut(s) 60, 257
Alw26I GTCTC 1 cut(s) 332
Alw44I GTGCAC 1 cut(s) 56
AlwI GGATC 3 cut(s) 301, 314, 344
AoxI GGCC 1 cut(s) 192
ApaLI GTGCAC 1 cut(s) 56
ApeKI GCWGC 3 cut(s) 26, 132, 197
AsuNHI GCTAGC 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 60
BamHI GGATCC 1 cut(s) 306
BanII GRGCYC 1 cut(s) 79
Bbv12I GWGCWC 2 cut(s) 60, 257
BbvI GCAGC 3 cut(s) 38, 119, 209
BccI CCATC 2 cut(s) 73, 88
BceAI ACGGC 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 2 cut(s) 18, 42
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 6 cut(s) 27, 133, 192, 195, 198, 207
BlsI GCNGC 6 cut(s) 28, 134, 193, 196, 199, 208
BmeRI GACNNNNNGTC 1 cut(s) 379
BmiI GGNNCC 2 cut(s) 78, 308
BmsI GCATC 1 cut(s) 191
BmtI GCTAGC 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 146, 178
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 4 cut(s) 138, 174, 228, 258
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 370
BseDI CCNNGG 4 cut(s) 138, 174, 228, 258
BseGI GGATG 2 cut(s) 65, 80
BseLI CCNNNNNNNGG 2 cut(s) 71, 370
BseSI GKGCMC 1 cut(s) 60
BseX3I CGGCCG 1 cut(s) 192
BseXI GCAGC 3 cut(s) 38, 119, 209
Bsh1285I CGRYCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 195
BsiHKAI GWGCWC 2 cut(s) 60, 257
BslFI GGGAC 2 cut(s) 207, 376
BslI CCNNNNNNNGG 2 cut(s) 71, 370
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 2 cut(s) 207, 376
BsnI GGCC 1 cut(s) 194
Bso31I GGTCTC 1 cut(s) 332
Bsp1286I GDGCHC 3 cut(s) 60, 79, 257
Bsp143I GATC 2 cut(s) 306, 336
Bsp19I CCATGG 2 cut(s) 138, 228
BspACI CCGC 4 cut(s) 191, 195, 206, 225
BspANI GGCC 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 78, 308
BspMAI CTGCAG 1 cut(s) 28
BspOI GCTAGC 1 cut(s) 21
BspPI GGATC 3 cut(s) 301, 314, 344
BspTNI GGTCTC 1 cut(s) 332
BssECI CCNNGG 4 cut(s) 138, 174, 228, 258
BssMI GATC 2 cut(s) 306, 336
BssT1I CCWWGG 3 cut(s) 138, 174, 228
Bst4CI ACNGT 2 cut(s) 37, 91
Bst6I CTCTTC 3 cut(s) 118, 363, 372
BstC8I GCNNGC 2 cut(s) 19, 49
BstDSI CCRYGG 2 cut(s) 138, 228
BstENI CCTNNNNNAGG 1 cut(s) 368
BstF5I GGATG 2 cut(s) 65, 80
BstKTI GATC 2 cut(s) 309, 339
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 2 cut(s) 306, 336
BstMCI CGRYCG 1 cut(s) 195
BstMWI GCNNNNNNNGC 6 cut(s) 23, 179, 188, 197, 203, 206
BstSFI CTRYAG 1 cut(s) 24
BstSLI GKGCMC 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 38, 119, 209
BstX2I RGATCY 2 cut(s) 306, 336
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 2 cut(s) 306, 336
BstZI CGGCCG 1 cut(s) 192
BsuRI GGCC 1 cut(s) 194
BtgI CCRYGG 2 cut(s) 138, 228
BtsCI GGATG 2 cut(s) 65, 80
Cac8I GCNNGC 2 cut(s) 19, 49
CciNI GCGGCCGC 1 cut(s) 192
CviAII CATG 3 cut(s) 139, 214, 229
DpnI GATC 2 cut(s) 308, 338
DpnII GATC 2 cut(s) 306, 336
DriI GACNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 192
EagI CGGCCG 1 cut(s) 192
Eam1104I CTCTTC 3 cut(s) 118, 363, 372
Eam1105I GACNNNNNGTC 1 cut(s) 379
EarI CTCTTC 3 cut(s) 118, 363, 372
EclXI CGGCCG 1 cut(s) 192
Eco130I CCWWGG 3 cut(s) 138, 174, 228
Eco24I GRGCYC 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 332
Eco52I CGGCCG 1 cut(s) 192
EcoNI CCTNNNNNAGG 1 cut(s) 368
EcoT14I CCWWGG 3 cut(s) 138, 174, 228
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 3 cut(s) 138, 174, 228
FaeI CATG 3 cut(s) 142, 217, 232
FaiI YATR 6 cut(s) 140, 170, 203, 215, 230, 354
FaqI GGGAC 2 cut(s) 207, 376
FatI CATG 3 cut(s) 138, 213, 228
FauI CCCGC 1 cut(s) 232
Fnu4HI GCNGC 6 cut(s) 27, 133, 192, 195, 198, 207
FokI GGATG 2 cut(s) 52, 67
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 6 cut(s) 27, 133, 192, 195, 198, 207
FspBI CTAG 2 cut(s) 18, 42
GluI GCNGC 6 cut(s) 27, 133, 192, 195, 198, 207
HaeIII GGCC 1 cut(s) 194
Hin1II CATG 3 cut(s) 142, 217, 232
HinfI GANTC 1 cut(s) 380
Hpy166II GTNNAC 2 cut(s) 58, 241
Hpy188I TCNGA 1 cut(s) 281
Hpy188III TCNNGA 1 cut(s) 384
Hpy8I GTNNAC 2 cut(s) 58, 241
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 3 cut(s) 137, 286, 305
HpyCH4III ACNGT 2 cut(s) 37, 91
HpyCH4V TGCA 4 cut(s) 26, 58, 113, 182
HpyF10VI GCNNNNNNNGC 6 cut(s) 23, 179, 188, 197, 203, 206
Hsp92II CATG 3 cut(s) 142, 217, 232
Kzo9I GATC 2 cut(s) 306, 336
LmnI GCTCC 2 cut(s) 82, 140
LpnPI CCDG 2 cut(s) 252, 369
Lsp1109I GCAGC 3 cut(s) 38, 119, 209
LweI GCATC 1 cut(s) 191
MaeI CTAG 2 cut(s) 18, 42
MaeIII GTNAC 2 cut(s) 37, 105
MalI GATC 2 cut(s) 308, 338
MboI GATC 2 cut(s) 306, 336
MboII GAAGA 4 cut(s) 135, 331, 380, 389
MflI RGATCY 2 cut(s) 306, 336
MhlI GDGCHC 3 cut(s) 60, 79, 257
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 1 cut(s) 284
MnlI CCTC 7 cut(s) 40, 94, 253, 320, 364, 370, 374
MwoI GCNNNNNNNGC 6 cut(s) 23, 179, 188, 197, 203, 206
NcoI CCATGG 2 cut(s) 138, 228
NdeII GATC 2 cut(s) 306, 336
NheI GCTAGC 1 cut(s) 17
NlaIII CATG 3 cut(s) 142, 217, 232
NlaIV GGNNCC 2 cut(s) 78, 308
NmuCI GTSAC 2 cut(s) 37, 105
NotI GCGGCCGC 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PflFI GACNNNGTC 1 cut(s) 214
PflMI CCANNNNNTGG 1 cut(s) 71
PkrI GCNGC 6 cut(s) 28, 134, 193, 196, 199, 208
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PspN4I GGNNCC 2 cut(s) 78, 308
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 2 cut(s) 306, 336
PsyI GACNNNGTC 1 cut(s) 214
SatI GCNGC 6 cut(s) 27, 133, 192, 195, 198, 207
Sau3AI GATC 2 cut(s) 306, 336
SchI GAGTC 1 cut(s) 389
SduI GDGCHC 3 cut(s) 60, 79, 257
SetI ASST 5 cut(s) 23, 134, 202, 251, 297
SfaNI GCATC 1 cut(s) 191
SfcI CTRYAG 1 cut(s) 24
SsiI CCGC 4 cut(s) 191, 195, 206, 225
SspMI CTAG 2 cut(s) 18, 42
StyI CCWWGG 3 cut(s) 138, 174, 228
TaaI ACNGT 2 cut(s) 37, 91
TaqI TCGA 2 cut(s) 32, 366
TauI GCSGC 3 cut(s) 194, 197, 209
TseFI GTSAC 2 cut(s) 37, 105
TseI GCWGC 3 cut(s) 26, 132, 197
Tsp45I GTSAC 2 cut(s) 37, 105
TspGWI ACGGA 1 cut(s) 58
Tth111I GACNNNGTC 1 cut(s) 214
Van91I CCANNNNNTGG 1 cut(s) 71
VneI GTGCAC 1 cut(s) 56
XagI CCTNNNNNAGG 1 cut(s) 368
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XspI CTAG 2 cut(s) 18, 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.