Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0015130

Physical Location & Seq

Genomic Coordinates Forward (+)

28858772 .. 28860018

Gene Structure 1247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1192100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCAACCATTACTGCTAGCACTGCAGCCTCGTCTGTCGTTAGGGCAAGCCTTGTGCACAAGCCATCTGCTGGGGCTCCATCCTCAACTGTTTTGGCTTTGCCGTCACTTGCGAGAAAGGGAAGAGTGAGCTGCTCTATGGAAGGAAAGAAGGAGAGCAACTCAAACATGGCCAAGGGTGGATCTTTGGCGGCAGCAGCTATGGCGGCGACCATGTCAAGCCCCGCTATGGCTTTGGTGGACGACAGATTGAGCACCGAGGGAACAGGGCTTCCGTTCGGATTGAGCAACAACCTTCTTGGTTGGATCCTCTTTGGGGTGTTTGGTCTCATCTGGGCACTCTACTTTATCTATACTTCCTCCCTTGAAGAGGATGAAGAGTCGGGACTGTCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0010109 GO:0016020 GO:0019222 GO:0031323 GO:0031976 GO:0031984 GO:0034357 GO:0042548 GO:0042549 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0055035 GO:0065007

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbW

Protein Analysis

133

Amino Acids

13.53

Weight (kDa)

5.73

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbW	PF07123	1 - 132	3.3e-62	Photosystem II reaction centre W protein (PsbW)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015130)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30570
fragaria_vesca	FvH4_2g22470
malus_domestica	MD05G1205000.v1.1 MD10G1192100.v1.1
prunus_persica	Prupe.8G231600_v2.0.a1
pyrus_communis	pycom05g19120 pycom10g16600
rosa_chinensis	RchiOBHm_Chr6g0289411
rosa_laevigata	RLG00000012306
rosa_multiflora	Rmu_sc0001527.1_g000032
rosa_rugosa	Rorug06G0203300
rosa_samantha	Rh6AG314300 Rh6BG321900 Rh6CG328100 Rh6DG313800
rosa_wichuraiana	Rw6G027170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	71
AciI	CCGC	3 cut(s)	191, 206, 225
AclWI	GGATC	3 cut(s)	190, 301, 314
AcoI	YGGCCR	1 cut(s)	171
AfiI	CCNNNNNNNGG	4 cut(s)	71, 229, 316, 370
AgsI	TTSAA	1 cut(s)	368
AloI	GAACNNNNNNTCC	2 cut(s)	256, 288
AluBI	AGCT	2 cut(s)	132, 200
AluI	AGCT	2 cut(s)	132, 200
Alw21I	GWGCWC	2 cut(s)	60, 257
Alw26I	GTCTC	1 cut(s)	332
Alw44I	GTGCAC	1 cut(s)	56
AlwI	GGATC	3 cut(s)	190, 301, 314
AoxI	GGCC	1 cut(s)	171
ApaLI	GTGCAC	1 cut(s)	56
ApeKI	GCWGC	4 cut(s)	26, 132, 194, 197
AsuNHI	GCTAGC	1 cut(s)	17
BaeGI	GKGCMC	2 cut(s)	60, 340
BalI	TGGCCA	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	306
BanII	GRGCYC	1 cut(s)	79
Bbv12I	GWGCWC	2 cut(s)	60, 257
BbvI	GCAGC	4 cut(s)	38, 119, 206, 209
BccI	CCATC	2 cut(s)	73, 88
BceAI	ACGGC	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	6 cut(s)	27, 133, 192, 195, 198, 207
BlsI	GCNGC	6 cut(s)	28, 134, 193, 196, 199, 208
BmiI	GGNNCC	2 cut(s)	78, 308
BmtI	GCTAGC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BsaI	GGTCTC	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	174, 258
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 229, 316, 370
BseDI	CCNNGG	2 cut(s)	174, 258
BseGI	GGATG	2 cut(s)	80, 379
BseLI	CCNNNNNNNGG	4 cut(s)	71, 229, 316, 370
BseSI	GKGCMC	2 cut(s)	60, 340
BseXI	GCAGC	4 cut(s)	38, 119, 206, 209
BseYI	CCCAGC	1 cut(s)	71
BshFI	GGCC	1 cut(s)	173
BsiHKAI	GWGCWC	2 cut(s)	60, 257
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	4 cut(s)	71, 229, 316, 370
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	376
BsnI	GGCC	1 cut(s)	173
Bso31I	GGTCTC	1 cut(s)	332
Bsp1286I	GDGCHC	4 cut(s)	60, 79, 257, 340
Bsp143I	GATC	2 cut(s)	182, 306
BspACI	CCGC	3 cut(s)	191, 206, 225
BspANI	GGCC	1 cut(s)	173
BspLI	GGNNCC	2 cut(s)	78, 308
BspMAI	CTGCAG	1 cut(s)	28
BspOI	GCTAGC	1 cut(s)	21
BspPI	GGATC	3 cut(s)	190, 301, 314
BspTNI	GGTCTC	1 cut(s)	332
BssECI	CCNNGG	2 cut(s)	174, 258
BssMI	GATC	2 cut(s)	182, 306
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	91, 390
Bst6I	CTCTTC	3 cut(s)	118, 363, 372
BstC8I	GCNNGC	2 cut(s)	19, 49
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	80, 379
BstKTI	GATC	2 cut(s)	185, 309
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	2 cut(s)	182, 306
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 197, 203, 206
BstSFI	CTRYAG	1 cut(s)	24
BstSLI	GKGCMC	2 cut(s)	60, 340
BstV1I	GCAGC	4 cut(s)	38, 119, 206, 209
BstX2I	RGATCY	2 cut(s)	182, 306
BstYI	RGATCY	2 cut(s)	182, 306
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	80, 379
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	2 cut(s)	19, 49
CviAII	CATG	2 cut(s)	169, 214
DpnI	GATC	2 cut(s)	184, 308
DpnII	GATC	2 cut(s)	182, 306
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	3 cut(s)	118, 363, 372
EarI	CTCTTC	3 cut(s)	118, 363, 372
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	332
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	172, 217
FaiI	YATR	6 cut(s)	140, 170, 203, 215, 230, 354
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	2 cut(s)	168, 213
FauI	CCCGC	1 cut(s)	232
Fnu4HI	GCNGC	6 cut(s)	27, 133, 192, 195, 198, 207
FokI	GGATG	2 cut(s)	67, 386
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	6 cut(s)	27, 133, 192, 195, 198, 207
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	6 cut(s)	27, 133, 192, 195, 198, 207
GsaI	CCCAGC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	172, 217
HinfI	GANTC	1 cut(s)	380
Hpy166II	GTNNAC	2 cut(s)	58, 241
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	1 cut(s)	384
Hpy8I	GTNNAC	2 cut(s)	58, 241
HpyAV	CCTTC	3 cut(s)	137, 145, 305
HpyCH4III	ACNGT	2 cut(s)	91, 390
HpyCH4V	TGCA	2 cut(s)	26, 58
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 197, 203, 206
Hsp92II	CATG	2 cut(s)	172, 217
Kzo9I	GATC	2 cut(s)	182, 306
LmnI	GCTCC	1 cut(s)	82
LpnPI	CCDG	3 cut(s)	57, 252, 319
Lsp1109I	GCAGC	4 cut(s)	38, 119, 206, 209
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	2 cut(s)	184, 308
MboI	GATC	2 cut(s)	182, 306
MboII	GAAGA	3 cut(s)	135, 380, 389
MflI	RGATCY	2 cut(s)	182, 306
MhlI	GDGCHC	4 cut(s)	60, 79, 257, 340
MlsI	TGGCCA	1 cut(s)	173
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	389
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	6 cut(s)	40, 94, 253, 320, 364, 370
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
Msp20I	TGGCCA	1 cut(s)	173
MwoI	GCNNNNNNNGC	4 cut(s)	23, 197, 203, 206
NdeII	GATC	2 cut(s)	182, 306
NheI	GCTAGC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	172, 217
NlaIV	GGNNCC	2 cut(s)	78, 308
NmuCI	GTSAC	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	214
PflMI	CCANNNNNTGG	1 cut(s)	71
PkrI	GCNGC	6 cut(s)	28, 134, 193, 196, 199, 208
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	71
PspN4I	GGNNCC	2 cut(s)	78, 308
PstI	CTGCAG	1 cut(s)	28
PsuI	RGATCY	2 cut(s)	182, 306
PsyI	GACNNNGTC	1 cut(s)	214
SatI	GCNGC	6 cut(s)	27, 133, 192, 195, 198, 207
Sau3AI	GATC	2 cut(s)	182, 306
SchI	GAGTC	1 cut(s)	389
SduI	GDGCHC	4 cut(s)	60, 79, 257, 340
SetI	ASST	3 cut(s)	134, 202, 297
SfcI	CTRYAG	1 cut(s)	24
SsiI	CCGC	3 cut(s)	191, 206, 225
SspMI	CTAG	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	91, 390
TauI	GCSGC	2 cut(s)	194, 209
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	105
TseI	GCWGC	4 cut(s)	26, 132, 194, 197
Tsp45I	GTSAC	1 cut(s)	105
TspDTI	ATGAA	1 cut(s)	390
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	28
Tth111I	GACNNNGTC	1 cut(s)	214
Van91I	CCANNNNNTGG	1 cut(s)	71
VneI	GTGCAC	1 cut(s)	56
XagI	CCTNNNNNAGG	1 cut(s)	368
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.