AT2G31440

Aph-1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012099
Physical Location & Seq
Reverse (-)
13399095 .. 13401206
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G31440.1

Sequence Viewer

Length: 753 bp
ATGACGGTCGCGGCGGGTATCGGCTACGCGCTGGTGGCTTTAGGACCGTCTCTTTCACTTTTCGTCTCCGTCATCTCCAGAAAGCCCTTTCTCATCCTCACTGTTCTCTCCAGTACGTTGCTGTGGCTTGTGAGTCTGATCATCTTGTCGGGATTATGGAGACCATTTCTTCCTCTCAAAGCCAATGTGTGGTGGCCTTATGCTTTACTTGTTATCACCTCTGTTTGTTTCCAGGAAGGCCTTCGCTTTCTCTTCTGGAAGGTTTACAAGAGGCTTGAGGATGTCTTGGATTCCTTTGCGGATCGTATCTCAAGGCCCCGCCTGTTTCTCACTGATAAGCTGCAGATTGCTCTAGCTGGTGGTTTAGGTCATGGTGTGGCGCATGCTGTATTCTTTTGTTTGAGCCTCTTAACTCCAGCGTTTGGTCCAGCCACATTCTATGTCGAAAGATGTTCGAAGGTGCCATTTTTTCTCATCTCTGCAATCATTGCTCTTGCATTTGTTACGATCCACACATTCTCGATGGTCATTGCTTTCGAAGGGTATGCAAAAGGGAACAAAGTAGATCAAATAATAGTTCCAGTCATACACCTTACTGCTGGAATGTTGACATTGGTGAATTTTGCATCGGAAGGTTGTGTGATCGGGGTTCCTCTTCTTTACCTTGTGGCATCTTTGACTCTTGTGCATTGTGGAAAAATGGTTTGGCAAAGGTTGTTGGAAAGCCGGAACCAAAGCAGCGCCTCACGGTAA

Protein Analysis

250

Amino Acids

27.54

Weight (kDa)

9.57

Isoelectric Point (pI)

38.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aph-1 PF06105 5 - 238 1.2e-74 Aph-1 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012099)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31440 AT2G31440
fragaria_vesca FvH4_4g11160 FvH4_4g11160
malus_domestica MD04G1039500.v1.1
prunus_persica Prupe.1G190300_v2.0.a1 Prupe.1G190300_v2.0.a1 Prupe.1G190300_v2.0.a1
pyrus_communis pycom04g03260
rosa_chinensis RchiOBHm_Chr4g0407291
rosa_laevigata RLG00000008735
rosa_multiflora Rmu_sc0001860.1_g000011
rosa_roxburghii Rroxscaffold_5G00351830
rosa_rugosa Rorug04G0078500
rosa_samantha Rh4AG143200 Rh4BG140700 Rh4CG149600 Rh4DG137100
rosa_wichuraiana Rw4G011640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 460
AccB7I CCANNNNNTGG 2 cut(s) 189, 422
AccII CGCG 2 cut(s) 11, 29
AciI CCGC 4 cut(s) 11, 14, 299, 319
AclWI GGATC 2 cut(s) 309, 502
AcsI RAATTY 1 cut(s) 619
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 2 cut(s) 189, 422
AjnI CCWGG 1 cut(s) 231
AjuI GAANNNNNNNTTGG 2 cut(s) 688, 720
AluBI AGCT 2 cut(s) 340, 356
AluI AGCT 2 cut(s) 340, 356
Alw26I GTCTC 3 cut(s) 54, 70, 154
AlwI GGATC 2 cut(s) 309, 502
AoxI GGCC 3 cut(s) 194, 238, 314
ApeKI GCWGC 2 cut(s) 340, 738
ApoI RAATTY 1 cut(s) 619
Asp700I GAANNNNTTC 1 cut(s) 240
AspLEI GCGC 3 cut(s) 31, 382, 743
AspS9I GGNCC 3 cut(s) 44, 315, 425
AsuHPI GGTGA 2 cut(s) 208, 628
AsuII TTCGAA 2 cut(s) 455, 537
AvaII GGWCC 2 cut(s) 44, 425
BanI GGYRCC 1 cut(s) 460
BbvI GCAGC 1 cut(s) 327
BccI CCATC 1 cut(s) 517
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BciT130I CCWGG 1 cut(s) 233
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 3 cut(s) 54, 70, 154
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 1 cut(s) 341
BfoI RGCGCY 1 cut(s) 744
BisI GCNGC 3 cut(s) 12, 341, 739
BlsI GCNGC 3 cut(s) 13, 342, 740
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 2 cut(s) 44, 425
BmgT120I GGNCC 3 cut(s) 44, 315, 425
BmiI GGNNCC 4 cut(s) 317, 462, 651, 731
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 2 cut(s) 635, 680
BpmI CTGGAG 3 cut(s) 61, 94, 399
Bpu14I TTCGAA 2 cut(s) 455, 537
BpuEI CTTGAG 2 cut(s) 295, 296
BsaI GGTCTC 1 cut(s) 154
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 422
Bse1I ACTGG 2 cut(s) 111, 581
Bse3DI GCAATG 2 cut(s) 486, 528
BseBI CCWGG 1 cut(s) 233
BseGI GGATG 2 cut(s) 93, 286
BseLI CCNNNNNNNGG 2 cut(s) 189, 422
BseMI GCAATG 2 cut(s) 486, 528
BseNI ACTGG 2 cut(s) 111, 581
BseXI GCAGC 1 cut(s) 327
Bsh1236I CGCG 2 cut(s) 11, 29
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 3 cut(s) 196, 240, 316
BshNI GGYRCC 1 cut(s) 460
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 1 cut(s) 727
BslI CCNNNNNNNGG 2 cut(s) 189, 422
BsmAI GTCTC 3 cut(s) 54, 70, 154
BsmBI CGTCTC 2 cut(s) 54, 70
BsnI GGCC 3 cut(s) 196, 240, 316
Bso31I GGTCTC 1 cut(s) 154
Bsp119I TTCGAA 2 cut(s) 455, 537
Bsp143I GATC 5 cut(s) 138, 301, 507, 565, 642
BspACI CCGC 4 cut(s) 11, 14, 299, 319
BspANI GGCC 3 cut(s) 196, 240, 316
BspFNI CGCG 2 cut(s) 11, 29
BspLI GGNNCC 4 cut(s) 317, 462, 651, 731
BspMAI CTGCAG 1 cut(s) 345
BspPI GGATC 2 cut(s) 309, 502
BspT104I TTCGAA 2 cut(s) 455, 537
BspT107I GGYRCC 1 cut(s) 460
BspTNI GGTCTC 1 cut(s) 154
BsrDI GCAATG 2 cut(s) 486, 528
BsrI ACTGG 2 cut(s) 111, 581
BssMI GATC 5 cut(s) 138, 301, 507, 565, 642
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 4 cut(s) 7, 48, 103, 750
Bst6I CTCTTC 2 cut(s) 257, 660
BstAPI GCANNNNNTGC 1 cut(s) 488
BstBI TTCGAA 2 cut(s) 455, 537
BstC8I GCNNGC 1 cut(s) 384
BstF5I GGATG 2 cut(s) 93, 286
BstFNI CGCG 2 cut(s) 11, 29
BstH2I RGCGCY 1 cut(s) 744
BstHHI GCGC 3 cut(s) 31, 382, 743
BstKTI GATC 5 cut(s) 141, 304, 510, 568, 645
BstMAI GTCTC 3 cut(s) 54, 70, 154
BstMBI GATC 5 cut(s) 138, 301, 507, 565, 642
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 35, 488
BstNI CCWGG 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 386
BstSCI CCNGG 1 cut(s) 231
BstSFI CTRYAG 1 cut(s) 341
BstUI CGCG 2 cut(s) 11, 29
BstV1I GCAGC 1 cut(s) 327
BsuRI GGCC 3 cut(s) 196, 240, 316
BtsCI GGATG 2 cut(s) 93, 286
BtsIMutI CAGTG 2 cut(s) 99, 330
Cac8I GCNNGC 1 cut(s) 384
CfoI GCGC 3 cut(s) 31, 382, 743
Cfr13I GGNCC 3 cut(s) 44, 315, 425
Csp6I GTAC 1 cut(s) 114
CviAII CATG 2 cut(s) 371, 383
CviQI GTAC 1 cut(s) 114
DpnI GATC 5 cut(s) 140, 303, 509, 567, 644
DpnII GATC 5 cut(s) 138, 301, 507, 565, 642
Eam1104I CTCTTC 2 cut(s) 257, 660
EarI CTCTTC 2 cut(s) 257, 660
Eco147I AGGCCT 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 44, 425
EcoO109I RGGNCCY 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 231
Esp3I CGTCTC 2 cut(s) 54, 70
FaeI CATG 2 cut(s) 374, 386
FaiI YATR 7 cut(s) 157, 201, 372, 384, 441, 546, 587
FatI CATG 2 cut(s) 370, 382
FauI CCCGC 2 cut(s) 7, 326
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 12, 341, 739
FokI GGATG 2 cut(s) 80, 293
Fsp4HI GCNGC 3 cut(s) 12, 341, 739
FspBI CTAG 1 cut(s) 353
GlaI GCGC 3 cut(s) 30, 381, 742
GluI GCNGC 3 cut(s) 12, 341, 739
GsuI CTGGAG 3 cut(s) 61, 94, 399
HaeII RGCGCY 1 cut(s) 744
HaeIII GGCC 3 cut(s) 196, 240, 316
HapII CCGG 1 cut(s) 727
HhaI GCGC 3 cut(s) 31, 382, 743
Hin1II CATG 2 cut(s) 374, 386
Hin6I GCGC 3 cut(s) 29, 380, 741
HinP1I GCGC 3 cut(s) 29, 380, 741
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HinfI GANTC 3 cut(s) 133, 290, 679
HpaII CCGG 1 cut(s) 727
HphI GGTGA 2 cut(s) 208, 628
Hpy166II GTNNAC 2 cut(s) 265, 609
Hpy188I TCNGA 2 cut(s) 138, 631
Hpy188III TCNNGA 4 cut(s) 78, 150, 256, 520
Hpy8I GTNNAC 2 cut(s) 265, 609
HpyAV CCTTC 6 cut(s) 230, 251, 253, 451, 533, 626
HpyCH4III ACNGT 4 cut(s) 7, 48, 103, 750
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 6 cut(s) 343, 482, 497, 548, 626, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 488
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 2 cut(s) 374, 386
HspAI GCGC 3 cut(s) 29, 380, 741
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 5 cut(s) 138, 301, 507, 565, 642
Lsp1109I GCAGC 1 cut(s) 327
LweI GCATC 2 cut(s) 635, 680
MaeI CTAG 1 cut(s) 353
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 502
MalI GATC 5 cut(s) 140, 303, 509, 567, 644
MboI GATC 5 cut(s) 138, 301, 507, 565, 642
MboII GAAGA 3 cut(s) 161, 244, 647
MluCI AATT 1 cut(s) 619
MlyI GAGTC 2 cut(s) 142, 673
MmeI TCCRAC 1 cut(s) 699
MnlI CCTC 7 cut(s) 107, 183, 229, 264, 271, 416, 663
MroXI GAANNNNTTC 1 cut(s) 240
MseI TTAA 1 cut(s) 410
MspI CCGG 1 cut(s) 727
MspR9I CCNGG 1 cut(s) 233
MvaI CCWGG 1 cut(s) 233
MvnI CGCG 2 cut(s) 11, 29
MwoI GCNNNNNNNGC 2 cut(s) 35, 488
NdeII GATC 5 cut(s) 138, 301, 507, 565, 642
NlaIII CATG 2 cut(s) 374, 386
NlaIV GGNNCC 4 cut(s) 317, 462, 651, 731
NspI RCATGY 1 cut(s) 386
NspV TTCGAA 2 cut(s) 455, 537
PaeI GCATGC 1 cut(s) 386
PceI AGGCCT 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 1 cut(s) 290
PflMI CCANNNNNTGG 2 cut(s) 189, 422
PfoI TCCNGGA 1 cut(s) 231
PkrI GCNGC 3 cut(s) 13, 342, 740
PleI GAGTC 2 cut(s) 141, 673
PpsI GAGTC 2 cut(s) 141, 673
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 4 cut(s) 317, 462, 651, 731
PspPI GGNCC 3 cut(s) 44, 315, 425
PstI CTGCAG 1 cut(s) 345
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 3 cut(s) 12, 341, 739
Sau3AI GATC 5 cut(s) 138, 301, 507, 565, 642
Sau96I GGNCC 3 cut(s) 44, 315, 425
SchI GAGTC 2 cut(s) 142, 673
ScrFI CCNGG 1 cut(s) 233
SfaNI GCATC 2 cut(s) 635, 680
SfcI CTRYAG 1 cut(s) 341
SfuI TTCGAA 2 cut(s) 455, 537
SinI GGWCC 2 cut(s) 44, 425
SmlI CTYRAG 2 cut(s) 275, 310
SmoI CTYRAG 2 cut(s) 275, 310
SphI GCATGC 1 cut(s) 386
Sse9I AATT 1 cut(s) 619
SseBI AGGCCT 1 cut(s) 240
SsiI CCGC 4 cut(s) 11, 14, 299, 319
SspMI CTAG 1 cut(s) 353
StuI AGGCCT 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 4 cut(s) 7, 48, 103, 750
TaiI ACGT 1 cut(s) 119
TaqI TCGA 4 cut(s) 444, 455, 521, 537
TasI AATT 1 cut(s) 619
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 2 cut(s) 106, 337
TseI GCWGC 2 cut(s) 340, 738
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 2 cut(s) 106, 337
Van91I CCANNNNNTGG 2 cut(s) 189, 422
VpaK11BI GGWCC 2 cut(s) 44, 425
XapI RAATTY 1 cut(s) 619
XceI RCATGY 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 240
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.