Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001860.1

Orthogroup ID

OG0012099

Physical Location & Seq

Genomic Coordinates Forward (+)

56558 .. 59404

Gene Structure 2847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001860.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgacgatagcagcagggatcggttacgccttgttagcactcggcccgtctctctcccttttcatctctgttatctccaaaaagcccttcctggttctcaccgtcctttccagtacattgttatggcttgtaagtctcatcatgttgtcgggactgtggaggccatttctgcctctgaaatcatccgcatggtggccctatagcctcctcatattcacctcagttctctttcaagaagcccttcggattcttttctggaaggtctataagaagttggaagatacattggatgcatttgctgatagagtatctaaaccacgcctgtatctgactgataagatgcaaattgctctggctggtggtttgggtcatggcgtggcacatgctgtgttcttttgtctcagtctcttaacaccagcatttggtccaggaactttttttgtcgacaggtgctcaaagatacccttttttcttctttctgctatcattgcccttgcatttgttacaattcacacattttcgatggtcattgcatttaatggatatgcagaaggcaataaagtggaccagatttttgttcctttagttcatcttgttgcagggatggtggtaagtgtcactgacctcatgagactgttggtgtttaaatatgttaagatatcctactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0031224 GO:0031226 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051604 GO:0070011 GO:0070765 GO:0071704 GO:0071944 GO:0098796 GO:0098797 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04330 ko05010 map04330 map05010

Pfam Domains

Protein Families

Aph-1

Protein Analysis

222

Amino Acids

24.62

Weight (kDa)

9.6

Isoelectric Point (pI)

19.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31440 AT2G31440
fragaria_vesca	FvH4_4g11160 FvH4_4g11160
malus_domestica	MD04G1039500.v1.1
prunus_persica	Prupe.1G190300_v2.0.a1 Prupe.1G190300_v2.0.a1 Prupe.1G190300_v2.0.a1
pyrus_communis	pycom04g03260
rosa_chinensis	RchiOBHm_Chr4g0407291
rosa_laevigata	RLG00000008735
rosa_multiflora	Rmu_sc0001860.1_g000011
rosa_roxburghii	Rroxscaffold_5G00351830
rosa_rugosa	Rorug04G0078500
rosa_samantha	Rh4AG143200 Rh4BG140700 Rh4CG149600 Rh4DG137100
rosa_wichuraiana	Rw4G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	192, 422
AgsI	TTSAA	1 cut(s)	233
AjnI	CCWGG	2 cut(s)	90, 427
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
Alw21I	GWGCWC	1 cut(s)	455
Alw26I	GTCTC	5 cut(s)	54, 140, 404, 410, 625
AlwI	GGATC	1 cut(s)	26
AoxI	GGCC	3 cut(s)	43, 161, 194
ApeKI	GCWGC	1 cut(s)	11
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
Asp700I	GAANNNNTTC	1 cut(s)	240
AspS9I	GGNCC	4 cut(s)	44, 195, 425, 565
AsuHPI	GGTGA	2 cut(s)	91, 208
AvaII	GGWCC	2 cut(s)	425, 565
BaeI	ACNNNNGTAYC	2 cut(s)	308, 341
Bbv12I	GWGCWC	1 cut(s)	455
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	2 cut(s)	517, 598
BciT130I	CCWGG	2 cut(s)	92, 429
BcoDI	GTCTC	5 cut(s)	54, 140, 404, 410, 625
BfmI	CTRYAG	1 cut(s)	199
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	92, 429
Bme18I	GGWCC	2 cut(s)	425, 565
BmgT120I	GGNCC	4 cut(s)	44, 195, 425, 565
BmrFI	CCNGG	2 cut(s)	92, 429
BmsI	GCATC	2 cut(s)	280, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 422
Bse1I	ACTGG	1 cut(s)	111
Bse3DI	GCAATG	2 cut(s)	486, 528
BseBI	CCWGG	2 cut(s)	92, 429
BseGI	GGATG	3 cut(s)	182, 295, 609
BseLI	CCNNNNNNNGG	2 cut(s)	192, 422
BseMI	GCAATG	2 cut(s)	486, 528
BseMII	CTCAG	2 cut(s)	234, 415
BseNI	ACTGG	1 cut(s)	111
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	3 cut(s)	45, 163, 196
BsiHKAI	GWGCWC	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	2 cut(s)	192, 422
BsmAI	GTCTC	5 cut(s)	54, 140, 404, 410, 625
BsmBI	CGTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	165
BsnI	GGCC	3 cut(s)	45, 163, 196
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	3 cut(s)	45, 163, 196
BspCNI	CTCAG	2 cut(s)	233, 414
BspHI	TCATGA	1 cut(s)	627
BspPI	GGATC	1 cut(s)	26
BsrDI	GCAATG	2 cut(s)	486, 528
BsrI	ACTGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	92, 429
Bst4CI	ACNGT	3 cut(s)	103, 156, 636
BstDEI	CTNAG	2 cut(s)	220, 401
BstF5I	GGATG	3 cut(s)	182, 295, 609
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	5 cut(s)	54, 140, 404, 410, 625
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 169, 488
BstNI	CCWGG	2 cut(s)	92, 429
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	2 cut(s)	90, 427
BstSFI	CTRYAG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	23
BsuRI	GGCC	3 cut(s)	45, 163, 196
BtsCI	GGATG	3 cut(s)	182, 295, 609
BtsIMutI	CAGTG	1 cut(s)	618
CciI	TCATGA	1 cut(s)	627
Cfr13I	GGNCC	4 cut(s)	44, 195, 425, 565
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	5 cut(s)	142, 189, 371, 383, 628
CviJI	RGCY	8 cut(s)	45, 85, 127, 163, 196, 204, 239, 356
CviKI_1	RGCY	8 cut(s)	45, 85, 127, 163, 196, 204, 239, 356
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	2 cut(s)	220, 401
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
DraI	TTTAAA	1 cut(s)	646
Eco32I	GATATC	1 cut(s)	660
Eco47I	GGWCC	2 cut(s)	425, 565
EcoRII	CCWGG	2 cut(s)	90, 427
EcoRV	GATATC	1 cut(s)	660
EcoT22I	ATGCAT	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	5 cut(s)	145, 192, 374, 386, 631
FalI	AAGNNNNNCTT	4 cut(s)	225, 257, 449, 481
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	5 cut(s)	141, 188, 370, 382, 627
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	3 cut(s)	169, 302, 616
Fsp4HI	GCNGC	1 cut(s)	12
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	45, 163, 196
Hin1II	CATG	5 cut(s)	145, 192, 374, 386, 631
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	1 cut(s)	247
HphI	GGTGA	2 cut(s)	91, 208
Hpy166II	GTNNAC	2 cut(s)	445, 565
Hpy188I	TCNGA	3 cut(s)	177, 246, 330
Hpy188III	TCNNGA	4 cut(s)	150, 233, 256, 628
Hpy8I	GTNNAC	2 cut(s)	445, 565
HpyAV	CCTTC	4 cut(s)	97, 251, 253, 545
HpyCH4III	ACNGT	3 cut(s)	103, 156, 636
HpyCH4V	TGCA	6 cut(s)	293, 343, 497, 533, 548, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 169, 488
HpyF3I	CTNAG	2 cut(s)	220, 401
Hsp92II	CATG	5 cut(s)	145, 192, 374, 386, 631
Kzo9I	GATC	1 cut(s)	18
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	2 cut(s)	280, 330
MaeIII	GTNAC	3 cut(s)	23, 502, 616
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	2 cut(s)	290, 464
MhlI	GDGCHC	1 cut(s)	455
MluCI	AATT	2 cut(s)	345, 507
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	6 cut(s)	153, 183, 215, 218, 229, 635
Mph1103I	ATGCAT	1 cut(s)	295
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	4 cut(s)	410, 537, 645, 654
MslI	CAYNNNNRTG	2 cut(s)	121, 187
MspR9I	CCNGG	2 cut(s)	92, 429
MvaI	CCWGG	2 cut(s)	92, 429
MwoI	GCNNNNNNNGC	3 cut(s)	35, 169, 488
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	5 cut(s)	145, 192, 374, 386, 631
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	616
NsiI	ATGCAT	1 cut(s)	295
NspI	RCATGY	1 cut(s)	386
PagI	TCATGA	1 cut(s)	627
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	247
PflMI	CCANNNNNTGG	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	427
PkrI	GCNGC	1 cut(s)	13
Psp6I	CCWGG	2 cut(s)	90, 427
PspGI	CCWGG	2 cut(s)	90, 427
PspPI	GGNCC	4 cut(s)	44, 195, 425, 565
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
RseI	CAYNNNNRTG	2 cut(s)	121, 187
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	4 cut(s)	410, 537, 645, 654
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	4 cut(s)	44, 195, 425, 565
ScrFI	CCNGG	2 cut(s)	92, 429
SduI	GDGCHC	1 cut(s)	455
SetI	ASST	4 cut(s)	221, 264, 452, 627
SfaNI	GCATC	2 cut(s)	280, 330
SfcI	CTRYAG	1 cut(s)	199
SinI	GGWCC	2 cut(s)	425, 565
SmiMI	CAYNNNNRTG	2 cut(s)	121, 187
Sse9I	AATT	2 cut(s)	345, 507
SsiI	CCGC	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	90, 427
TaaI	ACNGT	3 cut(s)	103, 156, 636
TaqI	TCGA	2 cut(s)	444, 521
TasI	AATT	2 cut(s)	345, 507
TatI	WGTACW	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	4 cut(s)	410, 537, 645, 654
Tru9I	TTAA	4 cut(s)	410, 537, 645, 654
TscAI	CASTG	1 cut(s)	625
TseFI	GTSAC	1 cut(s)	616
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	616
TspDTI	ATGAA	2 cut(s)	52, 578
TspRI	CASTG	1 cut(s)	625
Van91I	CCANNNNNTGG	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	425, 565
XceI	RCATGY	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	240
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.