Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012099

Physical Location & Seq

Genomic Coordinates Forward (+)

2972669 .. 2976236

Gene Structure 3568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03260.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGACGATAGCAGCAGGGATCGGCTACGCCTTGCTAGCGCTAGGCCCCTCCCTCTCCCTCTTCGTCTCTGTCATCTCCAAGAAACCCTTTCTGGTTCTAACCGTCCTTTCAAGTACATTGTTATGGCTTATAAGTCTCATCGTGTTGTCGGGATTGTGGAGGGCATTCCTACCTCTGAAATCATCGGCATGGTGGCCGTATGGCATTCTCATATTCACATCTGTTGTGTTTCAAGAAGGGCTTCGGGTTCTTTTCTGGAAGGTCTACAAGAAGTTGGAAGATACATTGGATGCTTTTGCTGATAGAGTCTCTAAACCACGGCTATATTTAACTGATAAGATGCAAATCGCTCTGGCTGGAGGTCTGGGTCATGGTGTGGCACATGCTGTGTTTTTCTGTCTCAGCCTATTAACACCAGCATTTGGTCCTGCAACCTTCTTCGTTGACAGGTGCTCGAAGATACCATTTTTTCTTCTCTCTGCACTCATTGCCCTTGCGTTTGTAACAATTCATACTTTTTCCATGGTCATTGCATTCAATGGATATGCAGAAGGGAACAAGGTGGACCAGATTTTTGTTCCTGTAGTTCATCTTGTAGCAGGCATGGTGACACTTGTTAATTTTGCATCTGGGGGTTGTACCATCGGTATTCCGCTCCTTTTCTTCATCGCAATCCTGACGTTATTGCATTGTGGGAAGATGGTGTGGAGGAGGTTGACAGAGAACCGACACAGACAGGGTAATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0031224 GO:0031226 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051604 GO:0070011 GO:0070765 GO:0071704 GO:0071944 GO:0098796 GO:0098797 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04330 ko05010 map04330 map05010

Pfam Domains

Protein Families

Aph-1

Protein Analysis

250

Amino Acids

27.41

Weight (kDa)

9.73

Isoelectric Point (pI)

25.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31440 AT2G31440
fragaria_vesca	FvH4_4g11160 FvH4_4g11160
malus_domestica	MD04G1039500.v1.1
prunus_persica	Prupe.1G190300_v2.0.a1 Prupe.1G190300_v2.0.a1 Prupe.1G190300_v2.0.a1
pyrus_communis	pycom04g03260
rosa_chinensis	RchiOBHm_Chr4g0407291
rosa_laevigata	RLG00000008735
rosa_multiflora	Rmu_sc0001860.1_g000011
rosa_roxburghii	Rroxscaffold_5G00351830
rosa_rugosa	Rorug04G0078500
rosa_samantha	Rh4AG143200 Rh4BG140700 Rh4CG149600 Rh4DG137100
rosa_wichuraiana	Rw4G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	131
AccB7I	CCANNNNNTGG	1 cut(s)	422
AccBSI	CCGCTC	1 cut(s)	655
AccI	GTMKAC	1 cut(s)	264
AciI	CCGC	1 cut(s)	653
AclWI	GGATC	1 cut(s)	26
AcoI	YGGCCR	1 cut(s)	194
AfaI	GTAC	2 cut(s)	115, 640
AfeI	AGCGCT	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	3 cut(s)	111, 233, 538
Alw21I	GWGCWC	1 cut(s)	455
Alw26I	GTCTC	4 cut(s)	70, 140, 313, 404
AlwI	GGATC	1 cut(s)	26
Aor51HI	AGCGCT	1 cut(s)	39
AoxI	GGCC	2 cut(s)	43, 194
ApeKI	GCWGC	1 cut(s)	11
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	3 cut(s)	44, 425, 565
AsuHPI	GGTGA	1 cut(s)	619
AsuNHI	GCTAGC	1 cut(s)	34
AvaII	GGWCC	2 cut(s)	425, 565
Bbv12I	GWGCWC	1 cut(s)	455
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	2 cut(s)	650, 694
BceAI	ACGGC	2 cut(s)	181, 335
BcoDI	GTCTC	4 cut(s)	70, 140, 313, 404
BfaI	CTAG	2 cut(s)	35, 41
BfmI	CTRYAG	1 cut(s)	582
BfoI	RGCGCY	1 cut(s)	41
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme18I	GGWCC	2 cut(s)	425, 565
BmgT120I	GGNCC	3 cut(s)	44, 425, 565
BmiI	GGNNCC	1 cut(s)	46
BmsI	GCATC	3 cut(s)	280, 330, 635
BmtI	GCTAGC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	378
BsaBI	GATNNNNATC	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	317, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse3DI	GCAATG	2 cut(s)	486, 528
Bse8I	GATNNNNATC	1 cut(s)	344
BseDI	CCNNGG	2 cut(s)	317, 522
BseGI	GGATG	1 cut(s)	295
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	2 cut(s)	486, 528
BseMII	CTCAG	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	724
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	2 cut(s)	45, 196
BsiHKAI	GWGCWC	1 cut(s)	455
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	4 cut(s)	70, 140, 313, 404
BsmBI	CGTCTC	1 cut(s)	70
BsmI	GAATGC	3 cut(s)	164, 204, 533
BsnI	GGCC	2 cut(s)	45, 196
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp143I	GATC	1 cut(s)	18
Bsp19I	CCATGG	1 cut(s)	522
BspACI	CCGC	1 cut(s)	653
BspANI	GGCC	2 cut(s)	45, 196
BspCNI	CTCAG	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	46
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	655
BsrDI	GCAATG	2 cut(s)	486, 528
BssECI	CCNNGG	2 cut(s)	317, 522
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	2 cut(s)	36, 601
BstDEI	CTNAG	1 cut(s)	401
BstDSI	CCRYGG	2 cut(s)	317, 522
BstF5I	GGATG	1 cut(s)	295
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	4 cut(s)	70, 140, 313, 404
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 488
BstNSI	RCATGY	1 cut(s)	386
BstSFI	CTRYAG	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	45, 196
BtgI	CCRYGG	2 cut(s)	317, 522
BtgZI	GCGATG	1 cut(s)	652
BtsCI	GGATG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	36, 601
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	3 cut(s)	44, 425, 565
Csp6I	GTAC	2 cut(s)	114, 639
CviAII	CATG	5 cut(s)	189, 371, 383, 523, 604
CviJI	RGCY	8 cut(s)	24, 45, 127, 196, 241, 322, 356, 405
CviKI_1	RGCY	8 cut(s)	24, 45, 127, 196, 241, 322, 356, 405
CviQI	GTAC	2 cut(s)	114, 639
DdeI	CTNAG	1 cut(s)	401
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	522
Eco47I	GGWCC	2 cut(s)	425, 565
Eco47III	AGCGCT	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	522
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	5 cut(s)	192, 374, 386, 526, 607
FalI	AAGNNNNNCTT	4 cut(s)	71, 103, 225, 257
FatI	CATG	5 cut(s)	188, 370, 382, 522, 603
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	2 cut(s)	35, 41
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	378
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	45, 196
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	5 cut(s)	192, 374, 386, 526, 607
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	2 cut(s)	445, 717
HindII	GTYRAC	2 cut(s)	445, 717
HinfI	GANTC	1 cut(s)	306
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	4 cut(s)	265, 445, 565, 717
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	4 cut(s)	150, 233, 256, 676
Hpy8I	GTNNAC	4 cut(s)	265, 445, 565, 717
HpyAV	CCTTC	4 cut(s)	230, 253, 445, 545
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	680
HpyCH4V	TGCA	7 cut(s)	343, 431, 482, 533, 548, 626, 688
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 488
HpyF3I	CTNAG	1 cut(s)	401
HpySE526I	ACGT	1 cut(s)	680
Hsp92II	CATG	5 cut(s)	192, 374, 386, 526, 607
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	1 cut(s)	660
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	3 cut(s)	280, 330, 635
MaeI	CTAG	2 cut(s)	35, 41
MaeII	ACGT	1 cut(s)	680
MaeIII	GTNAC	2 cut(s)	502, 607
MalI	GATC	1 cut(s)	20
MbiI	CCGCTC	1 cut(s)	655
MboI	GATC	1 cut(s)	18
MboII	GAAGA	7 cut(s)	52, 290, 430, 464, 469, 655, 709
MhlI	GDGCHC	1 cut(s)	455
MluCI	AATT	2 cut(s)	507, 619
MlyI	GAGTC	1 cut(s)	315
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	8 cut(s)	58, 62, 68, 153, 183, 353, 702, 705
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	3 cut(s)	329, 410, 618
MslI	CAYNNNNRTG	2 cut(s)	121, 187
Mva1269I	GAATGC	3 cut(s)	164, 204, 533
MwoI	GCNNNNNNNGC	2 cut(s)	35, 488
NcoI	CCATGG	1 cut(s)	522
NdeII	GATC	1 cut(s)	18
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	5 cut(s)	192, 374, 386, 526, 607
NlaIV	GGNNCC	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	607
NspI	RCATGY	1 cut(s)	386
PctI	GAATGC	3 cut(s)	164, 204, 533
PdmI	GAANNNNTTC	1 cut(s)	240
PflMI	CCANNNNNTGG	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PsiI	TTATAA	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	3 cut(s)	44, 425, 565
RsaI	GTAC	2 cut(s)	115, 640
RsaNI	GTAC	2 cut(s)	114, 639
RseI	CAYNNNNRTG	2 cut(s)	121, 187
SaqAI	TTAA	3 cut(s)	329, 410, 618
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	3 cut(s)	44, 425, 565
SchI	GAGTC	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	455
SetI	ASST	8 cut(s)	175, 264, 364, 437, 452, 564, 683, 716
SfaNI	GCATC	3 cut(s)	280, 330, 635
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	2 cut(s)	425, 565
SmiMI	CAYNNNNRTG	2 cut(s)	121, 187
Sse9I	AATT	2 cut(s)	507, 619
SsiI	CCGC	1 cut(s)	653
SspMI	CTAG	2 cut(s)	35, 41
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	683
TaqI	TCGA	1 cut(s)	455
TasI	AATT	2 cut(s)	507, 619
TatI	WGTACW	1 cut(s)	113
Tru1I	TTAA	3 cut(s)	329, 410, 618
Tru9I	TTAA	3 cut(s)	329, 410, 618
TseFI	GTSAC	1 cut(s)	607
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	607
TspDTI	ATGAA	3 cut(s)	500, 578, 655
Van91I	CCANNNNNTGG	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	425, 565
XceI	RCATGY	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	2 cut(s)	35, 41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.