Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0012099

Physical Location & Seq

Genomic Coordinates Reverse (-)

24979802 .. 24982961

Gene Structure 3160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG140700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGACGATAGCAGCAGGGATCGGTTACGCCTTGTTAGCACTCGGCCCGTCTCTCTCCCTTTTCATCTCTGTTATCTCCAAAAAGCCCTTCCTGGTTCTCACCGTCCTTTCCAGTACATTGTTATGGCTTGTAAGTCTCATCATGTTGTCGGGACTCTGGAGGCCATTTCTGCCTCTGAAATCATCCGCATGGTGGCCCTATGCCCTCCTCATATTCACCTCAGTTCTCTTTCAAGAAGCCCTTCGGATTCTTTTCTGGAAGGTCTATAAGAAGTTGGAAGATACATTGGATGCATTTGCTGATAGAGTATCTAAACCACGCCTGTATCTGACTGATAAGATGCAAATTGCTCTGGCTGGTGGTTTGGGTCATGGCGTGGCACATGCTGTGTGCTCAAAGATACCCTTTTTTCTTCTTTCTGCTATCATTGCCCTTGCATTTGTTACAATTCACACATTTTCGATGGTCATTGCATTTAATGGATATGCAGAAGGCAATAAAGTGGACCAGATTTTTGTACCTTTAGTTCATCTTGTTGCAGGGATGGTGACACTAGTTAATTTTGCATCTGGGGGATGTATTATCGGTATTCCTCTCCTCTACTTTGTCGCTGTGTTAACCTTATTGCATTGTGGGAAGATGGTGTGGAGAAGGTTAACAGAGAACAGACACAGACCCGTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0031224 GO:0031226 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051604 GO:0070011 GO:0070765 GO:0071704 GO:0071944 GO:0098796 GO:0098797 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04330 ko05010 map04330 map05010

Pfam Domains

Protein Families

Aph-1

Protein Analysis

228

Amino Acids

25.21

Weight (kDa)

9.78

Isoelectric Point (pI)

26.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aph-1	PF06105	5 - 132	1.9e-38	Aph-1 protein
Aph-1	PF06105	131 - 218	2.1e-21	Aph-1 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31440 AT2G31440
fragaria_vesca	FvH4_4g11160 FvH4_4g11160
malus_domestica	MD04G1039500.v1.1
prunus_persica	Prupe.1G190300_v2.0.a1 Prupe.1G190300_v2.0.a1 Prupe.1G190300_v2.0.a1
pyrus_communis	pycom04g03260
rosa_chinensis	RchiOBHm_Chr4g0407291
rosa_laevigata	RLG00000008735
rosa_multiflora	Rmu_sc0001860.1_g000011
rosa_roxburghii	Rroxscaffold_5G00351830
rosa_rugosa	Rorug04G0078500
rosa_samantha	Rh4AG143200 Rh4BG140700 Rh4CG149600 Rh4DG137100
rosa_wichuraiana	Rw4G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	1 cut(s)	26
AfaI	GTAC	2 cut(s)	115, 519
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	233
AhlI	ACTAGT	1 cut(s)	553
AjnI	CCWGG	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	54, 140
AlwI	GGATC	1 cut(s)	26
AoxI	GGCC	3 cut(s)	43, 161, 194
ApeKI	GCWGC	1 cut(s)	11
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
Asp700I	GAANNNNTTC	1 cut(s)	240
AspS9I	GGNCC	3 cut(s)	44, 195, 505
AsuHPI	GGTGA	3 cut(s)	91, 208, 559
AvaII	GGWCC	1 cut(s)	505
BaeI	ACNNNNGTAYC	2 cut(s)	308, 341
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	3 cut(s)	457, 538, 634
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	2 cut(s)	54, 140
BcuI	ACTAGT	1 cut(s)	553
BfaI	CTAG	1 cut(s)	554
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	505
BmgT120I	GGNCC	3 cut(s)	44, 195, 505
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	3 cut(s)	280, 330, 575
BpmI	CTGGAG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	111
Bse3DI	GCAATG	2 cut(s)	426, 468
BseBI	CCWGG	1 cut(s)	92
BseGI	GGATG	4 cut(s)	182, 295, 549, 581
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMI	GCAATG	2 cut(s)	426, 468
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	111
BseRI	GAGGAG	2 cut(s)	197, 587
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	3 cut(s)	45, 163, 196
BsiHKAI	GWGCWC	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	2 cut(s)	54, 140
BsmBI	CGTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	165
BsnI	GGCC	3 cut(s)	45, 163, 196
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	3 cut(s)	45, 163, 196
BspCNI	CTCAG	1 cut(s)	233
BspPI	GGATC	1 cut(s)	26
BsrDI	GCAATG	2 cut(s)	426, 468
BsrI	ACTGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	1 cut(s)	103
BstDEI	CTNAG	1 cut(s)	220
BstF5I	GGATG	4 cut(s)	182, 295, 549, 581
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	2 cut(s)	54, 140
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 169, 428
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	23
BsuRI	GGCC	3 cut(s)	45, 163, 196
BtsCI	GGATG	4 cut(s)	182, 295, 549, 581
Cfr13I	GGNCC	3 cut(s)	44, 195, 505
Csp6I	GTAC	2 cut(s)	114, 518
CviAII	CATG	5 cut(s)	142, 189, 371, 383, 682
CviJI	RGCY	7 cut(s)	45, 85, 127, 163, 196, 239, 356
CviKI_1	RGCY	7 cut(s)	45, 85, 127, 163, 196, 239, 356
CviQI	GTAC	2 cut(s)	114, 518
DdeI	CTNAG	1 cut(s)	220
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	90
EcoT22I	ATGCAT	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	5 cut(s)	145, 192, 374, 386, 685
FalI	AAGNNNNNCTT	4 cut(s)	225, 257, 389, 421
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	5 cut(s)	141, 188, 370, 382, 681
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	4 cut(s)	169, 302, 556, 588
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	1 cut(s)	554
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	45, 163, 196
Hin1II	CATG	5 cut(s)	145, 192, 374, 386, 685
HincII	GTYRAC	2 cut(s)	618, 657
HindII	GTYRAC	2 cut(s)	618, 657
HinfI	GANTC	2 cut(s)	153, 247
HpaI	GTTAAC	2 cut(s)	618, 657
HphI	GGTGA	3 cut(s)	91, 208, 559
Hpy166II	GTNNAC	3 cut(s)	505, 618, 657
Hpy188I	TCNGA	3 cut(s)	177, 246, 330
Hpy188III	TCNNGA	4 cut(s)	150, 157, 233, 256
Hpy8I	GTNNAC	3 cut(s)	505, 618, 657
HpyAV	CCTTC	5 cut(s)	97, 251, 253, 485, 645
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	8 cut(s)	293, 343, 437, 473, 488, 539, 566, 628
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 169, 428
HpyF3I	CTNAG	1 cut(s)	220
Hsp92II	CATG	5 cut(s)	145, 192, 374, 386, 685
KspAI	GTTAAC	2 cut(s)	618, 657
Kzo9I	GATC	1 cut(s)	18
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	3 cut(s)	280, 330, 575
MaeI	CTAG	1 cut(s)	554
MaeIII	GTNAC	3 cut(s)	23, 442, 547
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	3 cut(s)	290, 404, 649
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	3 cut(s)	345, 447, 559
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	7 cut(s)	153, 183, 215, 218, 229, 603, 608
Mph1103I	ATGCAT	1 cut(s)	295
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	4 cut(s)	477, 558, 617, 656
MslI	CAYNNNNRTG	2 cut(s)	121, 187
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	3 cut(s)	35, 169, 428
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	5 cut(s)	145, 192, 374, 386, 685
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	547
NsiI	ATGCAT	1 cut(s)	295
NspI	RCATGY	1 cut(s)	386
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspPI	GGNCC	3 cut(s)	44, 195, 505
PsrI	GAACNNNNNNTAC	2 cut(s)	510, 542
RsaI	GTAC	2 cut(s)	115, 519
RsaNI	GTAC	2 cut(s)	114, 518
RseI	CAYNNNNRTG	2 cut(s)	121, 187
SaqAI	TTAA	4 cut(s)	477, 558, 617, 656
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	3 cut(s)	44, 195, 505
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	395
SetI	ASST	5 cut(s)	221, 264, 523, 623, 656
SfaNI	GCATC	3 cut(s)	280, 330, 575
SinI	GGWCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	2 cut(s)	121, 187
SpeI	ACTAGT	1 cut(s)	553
Sse9I	AATT	3 cut(s)	345, 447, 559
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	1 cut(s)	554
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	461
TasI	AATT	3 cut(s)	345, 447, 559
TatI	WGTACW	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	4 cut(s)	477, 558, 617, 656
Tru9I	TTAA	4 cut(s)	477, 558, 617, 656
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	2 cut(s)	52, 518
VpaK11BI	GGWCC	1 cut(s)	505
XceI	RCATGY	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	1 cut(s)	554
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.