Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012099

Physical Location & Seq

Genomic Coordinates Forward (+)

17579784 .. 17584630

Gene Structure 4847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G190300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGACGATAGCAGCAGGGATCGGGTACGCCTTGCTAGCGCTAGGCCCGTCTCTCTCCCTCTTCGTCTCTGTTATCTCCAAAAAACCCTTCTTGGTTCTCACCGTGCTTTCAAGCACATTGTTATGGCTCACAAGTCTCATCGTGTTGTCGGGAATATGGAGGGCATTTCTGCCTCTCAAATCATCGACATGGTGGCCCTATAGCATTCTCATATTCACATCGGTTGCGTTTCAAGAAGGGCTTCGGGTTCTTTTCTGGAAGGTCTACAAGAGGTTGGAAGATACATTGGATGCTTTTGCCGATAGGGTCTCTAAACCACGCCTATATCTGACTGATAAGATGCAAATTGCTCTGGCTGGAGGTTTGGGTCATGGTGTGGCACATGCTGTGTTTTTCTGTATCAGCCTCTTAACACCAGCATTTGGTCCAGGAACTTTTTTTGTTGACAGATGCTCGAAGATTCCGTTTTTTCTTCTTTCTGCACTCATTGCCCTTGCATTTGTCACAATTCATACTTTTTCTATGGTCATCGCATTCAATGGATACGCAGAAAGGAACAAGGTGGACCAGCTTTTTGTTCCTATTGTTCATCTTGTTGCAGGGATGGTGACACTAGTTAATTTTGCATCGGGGGGTTGTATCATTGGCATTCCTCTCCTGTACTTCATCGCAATCTTGACCTTATTGCATTGTGGGAAGATGGTGTGGAGAAGGTTAACAGAGAACCGAGGCAGACAGGGTTCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005887 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0010467 GO:0012505 GO:0016020 GO:0016021 GO:0016485 GO:0016787 GO:0019538 GO:0031224 GO:0031226 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051604 GO:0070011 GO:0070765 GO:0071704 GO:0071944 GO:0098796 GO:0098797 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04330 ko05010 map04330 map05010

Pfam Domains

Protein Families

Aph-1

Protein Analysis

250

Amino Acids

27.48

Weight (kDa)

9.83

Isoelectric Point (pI)

21.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31440 AT2G31440
fragaria_vesca	FvH4_4g11160 FvH4_4g11160
malus_domestica	MD04G1039500.v1.1
prunus_persica	Prupe.1G190300_v2.0.a1 Prupe.1G190300_v2.0.a1 Prupe.1G190300_v2.0.a1
pyrus_communis	pycom04g03260
rosa_chinensis	RchiOBHm_Chr4g0407291
rosa_laevigata	RLG00000008735
rosa_multiflora	Rmu_sc0001860.1_g000011
rosa_roxburghii	Rroxscaffold_5G00351830
rosa_rugosa	Rorug04G0078500
rosa_samantha	Rh4AG143200 Rh4BG140700 Rh4CG149600 Rh4DG137100
rosa_wichuraiana	Rw4G011640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	264
AclWI	GGATC	1 cut(s)	26
AfaI	GTAC	2 cut(s)	26, 662
AfeI	AGCGCT	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	3 cut(s)	111, 233, 538
AhlI	ACTAGT	1 cut(s)	613
AjnI	CCWGG	1 cut(s)	427
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	1 cut(s)	571
AluI	AGCT	1 cut(s)	571
Alw26I	GTCTC	4 cut(s)	54, 70, 140, 313
AlwI	GGATC	1 cut(s)	26
Aor51HI	AGCGCT	1 cut(s)	39
AoxI	GGCC	2 cut(s)	43, 194
ApeKI	GCWGC	1 cut(s)	11
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	4 cut(s)	44, 195, 425, 565
AsuHPI	GGTGA	2 cut(s)	91, 619
AsuNHI	GCTAGC	1 cut(s)	34
AvaII	GGWCC	2 cut(s)	425, 565
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	2 cut(s)	598, 694
BciT130I	CCWGG	1 cut(s)	429
BciVI	GTATCC	1 cut(s)	536
BcoDI	GTCTC	4 cut(s)	54, 70, 140, 313
BcuI	ACTAGT	1 cut(s)	613
BfaI	CTAG	3 cut(s)	35, 41, 614
BfmI	CTRYAG	1 cut(s)	199
BfoI	RGCGCY	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	536
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	429
Bme18I	GGWCC	2 cut(s)	425, 565
BmgT120I	GGNCC	4 cut(s)	44, 195, 425, 565
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	4 cut(s)	280, 330, 440, 635
BmtI	GCTAGC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	1 cut(s)	727
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	727
BseGI	GGATG	2 cut(s)	295, 609
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	1 cut(s)	486
BseXI	GCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	2 cut(s)	45, 196
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	4 cut(s)	54, 70, 140, 313
BsmBI	CGTCTC	2 cut(s)	54, 70
BsmI	GAATGC	3 cut(s)	204, 533, 648
BsnI	GGCC	2 cut(s)	45, 196
Bso31I	GGTCTC	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	18
BspANI	GGCC	2 cut(s)	45, 196
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	486
BssECI	CCNNGG	1 cut(s)	727
BssMI	GATC	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	65
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	295, 609
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	4 cut(s)	54, 70, 140, 313
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 488
BstNI	CCWGG	1 cut(s)	429
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	427
BstSFI	CTRYAG	1 cut(s)	199
BstV1I	GCAGC	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	2 cut(s)	45, 196
BtgZI	GCGATG	2 cut(s)	514, 652
BtsCI	GGATG	2 cut(s)	295, 609
Cac8I	GCNNGC	1 cut(s)	36
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	4 cut(s)	44, 195, 425, 565
Csp6I	GTAC	2 cut(s)	25, 661
CviAII	CATG	3 cut(s)	189, 371, 383
CviJI	RGCY	7 cut(s)	45, 127, 196, 241, 356, 405, 571
CviKI_1	RGCY	7 cut(s)	45, 127, 196, 241, 356, 405, 571
CviQI	GTAC	2 cut(s)	25, 661
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	313
Eco47I	GGWCC	2 cut(s)	425, 565
Eco47III	AGCGCT	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	427
Esp3I	CGTCTC	2 cut(s)	54, 70
FaeI	CATG	3 cut(s)	192, 374, 386
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	3 cut(s)	188, 370, 382
FblI	GTMKAC	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	2 cut(s)	302, 616
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	3 cut(s)	35, 41, 614
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	378
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	45, 196
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	3 cut(s)	192, 374, 386
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	2 cut(s)	445, 717
HindII	GTYRAC	2 cut(s)	445, 717
HinfI	GANTC	1 cut(s)	460
HpaI	GTTAAC	1 cut(s)	717
HphI	GGTGA	2 cut(s)	91, 619
Hpy166II	GTNNAC	4 cut(s)	265, 445, 565, 717
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	4 cut(s)	150, 233, 256, 676
Hpy8I	GTNNAC	4 cut(s)	265, 445, 565, 717
HpyAV	CCTTC	4 cut(s)	97, 230, 253, 705
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	6 cut(s)	343, 482, 497, 599, 626, 688
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 488
Hsp92II	CATG	3 cut(s)	192, 374, 386
HspAI	GCGC	1 cut(s)	38
KspAI	GTTAAC	1 cut(s)	717
Kzo9I	GATC	1 cut(s)	18
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	4 cut(s)	280, 330, 440, 635
MaeI	CTAG	3 cut(s)	35, 41, 614
MaeIII	GTNAC	2 cut(s)	502, 607
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	5 cut(s)	52, 290, 464, 469, 709
MluCI	AATT	3 cut(s)	345, 507, 619
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	8 cut(s)	68, 153, 183, 264, 353, 416, 663, 722
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	3 cut(s)	410, 618, 716
MslI	CAYNNNNRTG	2 cut(s)	121, 187
MspR9I	CCNGG	1 cut(s)	429
Mva1269I	GAATGC	3 cut(s)	204, 533, 648
MvaI	CCWGG	1 cut(s)	429
MwoI	GCNNNNNNNGC	2 cut(s)	35, 488
NdeII	GATC	1 cut(s)	18
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	192, 374, 386
NmuCI	GTSAC	2 cut(s)	502, 607
NspI	RCATGY	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	1 cut(s)	461
PctI	GAATGC	3 cut(s)	204, 533, 648
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	460
PflMI	CCANNNNNTGG	1 cut(s)	422
PfoI	TCCNGGA	1 cut(s)	427
PkrI	GCNGC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspPI	GGNCC	4 cut(s)	44, 195, 425, 565
RsaI	GTAC	2 cut(s)	26, 662
RsaNI	GTAC	2 cut(s)	25, 661
RseI	CAYNNNNRTG	2 cut(s)	121, 187
SaqAI	TTAA	3 cut(s)	410, 618, 716
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	4 cut(s)	44, 195, 425, 565
ScrFI	CCNGG	1 cut(s)	429
SetI	ASST	7 cut(s)	264, 275, 364, 564, 573, 683, 716
SfaNI	GCATC	4 cut(s)	280, 330, 440, 635
SfcI	CTRYAG	1 cut(s)	199
SinI	GGWCC	2 cut(s)	425, 565
SmiMI	CAYNNNNRTG	2 cut(s)	121, 187
SpeI	ACTAGT	1 cut(s)	613
Sse9I	AATT	3 cut(s)	345, 507, 619
SspMI	CTAG	3 cut(s)	35, 41, 614
StyD4I	CCNGG	1 cut(s)	427
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	2 cut(s)	185, 455
TasI	AATT	3 cut(s)	345, 507, 619
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	3 cut(s)	410, 618, 716
Tru9I	TTAA	3 cut(s)	410, 618, 716
TseFI	GTSAC	2 cut(s)	502, 607
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	2 cut(s)	502, 607
TspDTI	ATGAA	3 cut(s)	500, 578, 655
TspGWI	ACGGA	1 cut(s)	453
Van91I	CCANNNNNTGG	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	425, 565
XceI	RCATGY	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	3 cut(s)	35, 41, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.