Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012093

Physical Location & Seq

Genomic Coordinates Reverse (-)

13609093 .. 13609955

Gene Structure 863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G31980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCTACCATGTTGAAGGTCTCTCTTGTATTGTCATTGTTAGGTTTTCTGGTGATCGCTGTCGTGACTCCATCGGCGGCGAACCCATTCAGGAAGAGCGTAGTTCTCGGAGGGAAGTCAGGCGTTCCAAACATTCGGACCAACAGGGAAATTCAACAACTTGGAAGGTACTGCGTGGAGCAATTCAATCAACAAGCACAGAACGAGCAAGGAAACATAGGATCCATTGCGAAAACAGACACGGCAATTTCGAATCCATTGCAATTTAGCCGAGTAGTGTCTGCTCAGAAACAGGTCGTCGCTGGACTCAAATACTATCTAAGGATTGAAGTCACTCAACCCAATGGCTCTACCAGGATGTTTGACTCTGTTGTGGTTATTCAACCATGGCTCCATTCTAAGCAGTTGCTCGGTTTCACTCCTGTTGTCAGTCCTGTCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

147

Amino Acids

16.09

Weight (kDa)

10.08

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	80 - 142	2.3e-10	Aspartic acid proteinase inhibitor
Cystatin	PF00031	85 - 123	6.6e-06	Cystatin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31980
fragaria_vesca	FvH4_4g12780
malus_domestica	MD04G1023200.v1.1
prunus_persica	Prupe.1G014700_v2.0.a1 Prupe.1G172900_v2.0.a1 Prupe.3G089900_v2.0.a1
pyrus_communis	pycom13g29260
rosa_chinensis	RchiOBHm_Chr4g0402871 RchiOBHm_Chr4g0412111
rosa_laevigata	RLG00000008320
rosa_multiflora	Rmu_co8185456.1_g000001 Rmu_sc0001651.1_g000013 Rmu_sc0001651.1_g000014
rosa_roxburghii	Rroxscaffold_5G00356380
rosa_rugosa	Rorug04G0106400
rosa_samantha	Rh4BG170200 Rh4CG182300 Rh4DG165700
rosa_wichuraiana	Rw4G014290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	438
AciI	CCGC	1 cut(s)	77
AclWI	GGATC	2 cut(s)	216, 229
AcsI	RAATTY	1 cut(s)	150
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	5 cut(s)	16, 155, 187, 329, 383
AjnI	CCWGG	1 cut(s)	353
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	216, 229
ApoI	RAATTY	1 cut(s)	150
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	64
AsuII	TTCGAA	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	138
BamHI	GGATCC	1 cut(s)	221
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	241, 275
BciT130I	CCWGG	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	2 cut(s)	223, 392
BmrFI	CCNGG	1 cut(s)	355
Bpu14I	TTCGAA	1 cut(s)	251
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	386
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bse3DI	GCAATG	2 cut(s)	225, 257
BseBI	CCWGG	1 cut(s)	355
BseDI	CCNNGG	1 cut(s)	386
BseGI	GGATG	1 cut(s)	363
BseMI	GCAATG	2 cut(s)	225, 257
BseMII	CTCAG	1 cut(s)	299
BsmAI	GTCTC	1 cut(s)	25
Bso31I	GGTCTC	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	251
Bsp143I	GATC	2 cut(s)	54, 221
Bsp19I	CCATGG	1 cut(s)	386
BspACI	CCGC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	223, 392
BspPI	GGATC	2 cut(s)	216, 229
BspQI	GCTCTTC	1 cut(s)	89
BspT104I	TTCGAA	1 cut(s)	251
BspTNI	GGTCTC	1 cut(s)	25
BsrDI	GCAATG	2 cut(s)	225, 257
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	2 cut(s)	54, 221
BssT1I	CCWWGG	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	89
BstBI	TTCGAA	1 cut(s)	251
BstDEI	CTNAG	3 cut(s)	285, 320, 399
BstDSI	CCRYGG	1 cut(s)	386
BstF5I	GGATG	1 cut(s)	363
BstKTI	GATC	2 cut(s)	57, 224
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	2 cut(s)	54, 221
BstNI	CCWGG	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	353
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	2 cut(s)	10, 387
CviJI	RGCY	4 cut(s)	5, 270, 348, 391
CviKI_1	RGCY	4 cut(s)	5, 270, 348, 391
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	3 cut(s)	285, 320, 399
DpnI	GATC	2 cut(s)	56, 223
DpnII	GATC	2 cut(s)	54, 221
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	386
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	353
EcoT14I	CCWWGG	1 cut(s)	386
ErhI	CCWWGG	1 cut(s)	386
FaeI	CATG	2 cut(s)	13, 390
FaiI	YATR	3 cut(s)	11, 218, 388
FatI	CATG	2 cut(s)	9, 386
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	1 cut(s)	370
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	13, 390
HinfI	GANTC	4 cut(s)	67, 253, 306, 365
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	3 cut(s)	110, 138, 288
Hpy188III	TCNNGA	2 cut(s)	64, 91
Hpy8I	GTNNAC	1 cut(s)	439
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	10, 159
HpyCH4V	TGCA	1 cut(s)	262
HpyF3I	CTNAG	3 cut(s)	285, 320, 399
Hsp92II	CATG	2 cut(s)	13, 390
Kzo9I	GATC	2 cut(s)	54, 221
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	2 cut(s)	178, 396
LpnPI	CCDG	9 cut(s)	35, 76, 105, 130, 278, 288, 340, 367, 435
MaeIII	GTNAC	2 cut(s)	64, 331
MalI	GATC	2 cut(s)	56, 223
MboI	GATC	2 cut(s)	54, 221
MboII	GAAGA	1 cut(s)	106
MflI	RGATCY	1 cut(s)	221
MluCI	AATT	4 cut(s)	150, 182, 246, 263
MlyI	GAGTC	3 cut(s)	61, 300, 359
MnlI	CCTC	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	355
MvaI	CCWGG	1 cut(s)	355
NcoI	CCATGG	1 cut(s)	386
NdeII	GATC	2 cut(s)	54, 221
NlaIII	CATG	2 cut(s)	13, 390
NlaIV	GGNNCC	2 cut(s)	223, 392
NmeAIII	GCCGAG	1 cut(s)	296
NmuCI	GTSAC	2 cut(s)	64, 331
NspV	TTCGAA	1 cut(s)	251
PciSI	GCTCTTC	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	3 cut(s)	61, 300, 359
PpsI	GAGTC	3 cut(s)	61, 300, 359
Psp6I	CCWGG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	223, 392
PspPI	GGNCC	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	221
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	89
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	2 cut(s)	54, 221
Sau96I	GGNCC	1 cut(s)	138
SchI	GAGTC	3 cut(s)	61, 300, 359
ScrFI	CCNGG	1 cut(s)	355
SetI	ASST	4 cut(s)	21, 46, 170, 297
SfuI	TTCGAA	1 cut(s)	251
SinI	GGWCC	1 cut(s)	138
Sse9I	AATT	4 cut(s)	150, 182, 246, 263
SsiI	CCGC	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	353
StyI	CCWWGG	1 cut(s)	386
TaqI	TCGA	1 cut(s)	251
TasI	AATT	4 cut(s)	150, 182, 246, 263
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	253
TseFI	GTSAC	2 cut(s)	64, 331
Tsp45I	GTSAC	2 cut(s)	64, 331
VpaK11BI	GGWCC	1 cut(s)	138
XapI	RAATTY	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	438
XmnI	GAANNNNTTC	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.