Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012093

Physical Location & Seq

Genomic Coordinates Reverse (-)

14453007 .. 14454184

Gene Structure 1178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G172900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGATGAAAGTTCCAATTTTGGCCCTTCTGATCTGCCTCCTGTTCGCTTTGTCAAATGGGTATGGAGGAACCAAGGTCGGTGGCAGGCAGCAGATCGAAGACGTGAAGACGAACAAGGAGGTTCAGAAGTTGGGGAGGTTTTCGGTGGCGGAGTACAACCGGACGCAGCGGAAGAGCCACCAGAGCAACGGCGGCGGAGAGCTTCAGTTCTTGGAGGTGGTGGAGGCGCAGAGCCAGGTGGTTTCTGGGATCAAATACTATCTCAAGGTCTCCGCCGTCAGGAATGGGGCTCACATGCTGTTTGATTCGGAAGTGGTCGTGAAGCCATGGCTTCATTCCAAGCAATTGCTCAACTTTGCCCCTCATGGTCCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

126

Amino Acids

13.87

Weight (kDa)

9.63

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31980
fragaria_vesca	FvH4_4g12780
malus_domestica	MD04G1023200.v1.1
prunus_persica	Prupe.1G014700_v2.0.a1 Prupe.1G172900_v2.0.a1 Prupe.3G089900_v2.0.a1
pyrus_communis	pycom13g29260
rosa_chinensis	RchiOBHm_Chr4g0402871 RchiOBHm_Chr4g0412111
rosa_laevigata	RLG00000008320
rosa_multiflora	Rmu_co8185456.1_g000001 Rmu_sc0001651.1_g000013 Rmu_sc0001651.1_g000014
rosa_roxburghii	Rroxscaffold_5G00356380
rosa_rugosa	Rorug04G0106400
rosa_samantha	Rh4BG170200 Rh4CG182300 Rh4DG165700
rosa_wichuraiana	Rw4G014290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	149, 169, 192, 195, 273
AclWI	GGATC	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	188
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	279
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	1 cut(s)	257
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	2 cut(s)	88, 166
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	22, 368
AvaII	GGWCC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	292
BbsI	GAAGAC	2 cut(s)	105, 113
BbvI	GCAGC	2 cut(s)	100, 178
BceAI	ACGGC	2 cut(s)	205, 260
BciT130I	CCWGG	1 cut(s)	236
BcoDI	GTCTC	1 cut(s)	274
BisI	GCNGC	3 cut(s)	89, 167, 193
BlsI	GCNGC	3 cut(s)	90, 168, 194
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	368
BmgBI	CACGTC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	22, 368
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	1 cut(s)	236
BpiI	GAAGAC	2 cut(s)	105, 113
BpuEI	CTTGAG	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	72, 326
BsaWI	WCCGGW	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	72, 326
BseLI	CCNNNNNNNGG	1 cut(s)	279
BseXI	GCAGC	2 cut(s)	100, 178
BshFI	GGCC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	279
BsmAI	GTCTC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	30, 93, 249
Bsp19I	CCATGG	1 cut(s)	326
BspACI	CCGC	5 cut(s)	149, 169, 192, 195, 273
BspANI	GGCC	1 cut(s)	23
BspLI	GGNNCC	1 cut(s)	70
BspPI	GGATC	1 cut(s)	257
BspQI	GCTCTTC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	72, 326
BssMI	GATC	3 cut(s)	30, 93, 249
BssT1I	CCWWGG	2 cut(s)	72, 326
Bst2UI	CCWGG	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	86
BstDSI	CCRYGG	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	3 cut(s)	33, 96, 252
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	3 cut(s)	30, 93, 249
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 192
BstNI	CCWGG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	298
BstSCI	CCNGG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	100, 178
BstV2I	GAAGAC	2 cut(s)	105, 113
BsuRI	GGCC	1 cut(s)	23
BtgI	CCRYGG	1 cut(s)	326
BtrI	CACGTC	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	86
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	2 cut(s)	22, 368
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	154
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	3 cut(s)	295, 327, 365
CviJI	RGCY	7 cut(s)	23, 177, 202, 234, 290, 325, 331
CviKI_1	RGCY	7 cut(s)	23, 177, 202, 234, 290, 325, 331
CviQI	GTAC	1 cut(s)	154
DpnI	GATC	3 cut(s)	32, 95, 251
DpnII	GATC	3 cut(s)	30, 93, 249
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
EciI	GGCGGA	3 cut(s)	164, 210, 262
Eco130I	CCWWGG	2 cut(s)	72, 326
Eco24I	GRGCYC	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	2 cut(s)	72, 326
EcoT38I	GRGCYC	1 cut(s)	292
ErhI	CCWWGG	2 cut(s)	72, 326
FaeI	CATG	3 cut(s)	298, 330, 368
FaiI	YATR	4 cut(s)	63, 296, 328, 366
FatI	CATG	3 cut(s)	294, 326, 364
Fnu4HI	GCNGC	3 cut(s)	89, 167, 193
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	3 cut(s)	89, 167, 193
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	3 cut(s)	89, 167, 193
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	160
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	3 cut(s)	298, 330, 368
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	1 cut(s)	160
Hpy188I	TCNGA	3 cut(s)	30, 126, 310
Hpy188III	TCNNGA	2 cut(s)	280, 319
HpyAV	CCTTC	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 192
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	298, 330, 368
HspAI	GCGC	1 cut(s)	227
Kzo9I	GATC	3 cut(s)	30, 93, 249
LguI	GCTCTTC	1 cut(s)	167
LpnPI	CCDG	8 cut(s)	53, 70, 173, 194, 221, 231, 248, 265
Lsp1109I	GCAGC	2 cut(s)	100, 178
MaeII	ACGT	1 cut(s)	102
MalI	GATC	3 cut(s)	32, 95, 251
MboI	GATC	3 cut(s)	30, 93, 249
MboII	GAAGA	3 cut(s)	110, 118, 184
MfeI	CAATTG	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	3 cut(s)	15, 344, 373
MnlI	CCTC	7 cut(s)	47, 59, 112, 129, 208, 217, 372
MseI	TTAA	1 cut(s)	376
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	2 cut(s)	183, 192
NcoI	CCATGG	1 cut(s)	326
NdeII	GATC	3 cut(s)	30, 93, 249
NlaIII	CATG	3 cut(s)	298, 330, 368
NlaIV	GGNNCC	1 cut(s)	70
NspI	RCATGY	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	90, 168, 194
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	2 cut(s)	22, 368
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	376
SatI	GCNGC	3 cut(s)	89, 167, 193
Sau3AI	GATC	3 cut(s)	30, 93, 249
Sau96I	GGNCC	2 cut(s)	22, 368
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	8 cut(s)	78, 105, 123, 140, 204, 219, 240, 270
SinI	GGWCC	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	15, 344, 373
SsiI	CCGC	5 cut(s)	149, 169, 192, 195, 273
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	2 cut(s)	72, 326
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	96
TasI	AATT	3 cut(s)	15, 344, 373
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	195
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	376
Tru9I	TTAA	1 cut(s)	376
TseI	GCWGC	2 cut(s)	88, 166
TspDTI	ATGAA	2 cut(s)	20, 323
VpaK11BI	GGWCC	1 cut(s)	368
XceI	RCATGY	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.