Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012093

Physical Location & Seq

Genomic Coordinates Forward (+)

21727543 .. 21727990

Gene Structure 448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37464

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGCAAAAGTGGGATCTGAAATATGGGTTTGGAGGAAAACGGAAAACTCAACGACTTGGTTCTCACCGTCGAAAAACCCTTTGTTATTGGAGCAACGACGGCGGAGAGCTTCAGTTCAGGGAGGTGGTGGAGGTGCAGACTCAGGTGGTTTCGGGGATCAAGTACTATCTCAAGGTCTCAACCGTCAGGAATGGAGGAGCTCCTTCATTGTTTGATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

73

Amino Acids

8.39

Weight (kDa)

9.93

Isoelectric Point (pI)

25.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	33 - 63	3.5e-06	Cystatin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31980
fragaria_vesca	FvH4_4g12780
malus_domestica	MD04G1023200.v1.1
prunus_persica	Prupe.1G014700_v2.0.a1 Prupe.1G172900_v2.0.a1 Prupe.3G089900_v2.0.a1
pyrus_communis	pycom13g29260
rosa_chinensis	RchiOBHm_Chr4g0402871 RchiOBHm_Chr4g0412111
rosa_laevigata	RLG00000008320
rosa_multiflora	Rmu_co8185456.1_g000001 Rmu_sc0001651.1_g000013 Rmu_sc0001651.1_g000014
rosa_roxburghii	Rroxscaffold_5G00356380
rosa_rugosa	Rorug04G0106400
rosa_samantha	Rh4BG170200 Rh4CG182300 Rh4DG165700
rosa_wichuraiana	Rw4G014290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	2 cut(s)	21, 164
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	164
AluBI	AGCT	2 cut(s)	109, 200
AluI	AGCT	2 cut(s)	109, 200
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	181
AlwI	GGATC	2 cut(s)	21, 164
AsuHPI	GGTGA	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	181
BmcAI	AGTACT	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	155
BseRI	GAGGAG	1 cut(s)	210
BsgI	GTGCAG	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	181
Bso31I	GGTCTC	1 cut(s)	181
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	13, 156
BspACI	CCGC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	154
BspPI	GGATC	2 cut(s)	21, 164
BspTNI	GGTCTC	1 cut(s)	181
BssMI	GATC	2 cut(s)	13, 156
Bst4CI	ACNGT	2 cut(s)	68, 184
BstDEI	CTNAG	2 cut(s)	141, 219
BstKTI	GATC	2 cut(s)	16, 159
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	2 cut(s)	13, 156
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	163
CviJI	RGCY	2 cut(s)	109, 200
CviKI_1	RGCY	2 cut(s)	109, 200
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	2 cut(s)	141, 219
DpnI	GATC	2 cut(s)	15, 158
DpnII	GATC	2 cut(s)	13, 156
EciI	GGCGGA	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	202
Eco31I	GGTCTC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	202
FaiI	YATR	1 cut(s)	24
FriOI	GRGCYC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	139, 215
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	187
Hpy99I	CGWCG	2 cut(s)	72, 101
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	2 cut(s)	68, 184
HpyCH4V	TGCA	2 cut(s)	4, 136
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	2 cut(s)	141, 219
Kzo9I	GATC	2 cut(s)	13, 156
LmnI	GCTCC	3 cut(s)	90, 197, 205
LpnPI	CCDG	3 cut(s)	103, 128, 172
MalI	GATC	2 cut(s)	15, 158
MboI	GATC	2 cut(s)	13, 156
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	4 cut(s)	26, 115, 124, 188
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	2 cut(s)	13, 156
PfeI	GAWTC	1 cut(s)	215
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp124BI	GAGCTC	1 cut(s)	202
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	202
Sau3AI	GATC	2 cut(s)	13, 156
ScaI	AGTACT	1 cut(s)	164
SchI	GAGTC	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	6 cut(s)	111, 126, 135, 147, 177, 202
SgeI	CNNG	7 cut(s)	68, 130, 155, 165, 172, 184, 199
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SsiI	CCGC	1 cut(s)	102
SstI	GAGCTC	1 cut(s)	202
TaaI	ACNGT	2 cut(s)	68, 184
TaqI	TCGA	1 cut(s)	70
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	215
TspDTI	ATGAA	1 cut(s)	195
TspGWI	ACGGA	1 cut(s)	55
ZrmI	AGTACT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.