Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012093

Physical Location & Seq

Genomic Coordinates Forward (+)

16457969 .. 16458853

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCGTTGATAAAATCACCCGCGGCAAGGATAGCGGCGGCGACGGTCCTGATGTCACTCCTCTTCACTATGTCACACGGCTACGGTGGGCTAGTCGGGGGAAGAAGGCCGGTTGAGGACGTGAAGACGAACAAGGAGGTACAGGAGCTGGGGAGGTTCTCGGTGGCGGAGTACAATCGCATGCAGAGGCAGAGCTTAAGGAGCAACGGCGGCGGTGAGCTGCAGTTCAGGGAGGTGGTGGAGGCGGAGACTCAAGTGGTTTCGGGGATCAAGTATTATTTAAAGATCTCCACCGTGAGGAATGGACTCAATGGAGGAACTCCTTTGTTGTTTGATTCTCAGGTTGTCGTCAAGCCGTGGCTTCGCTCCAAGCGATTGCTTAACTTTGCACCTCACAGTAAACCAGTTTTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

139

Amino Acids

15.24

Weight (kDa)

10.27

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	38 - 100	9.5e-08	Cystatin domain
SQAPI	PF16845	43 - 130	4.1e-11	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31980
fragaria_vesca	FvH4_4g12780
malus_domestica	MD04G1023200.v1.1
prunus_persica	Prupe.1G014700_v2.0.a1 Prupe.1G172900_v2.0.a1 Prupe.3G089900_v2.0.a1
pyrus_communis	pycom13g29260
rosa_chinensis	RchiOBHm_Chr4g0402871 RchiOBHm_Chr4g0412111
rosa_laevigata	RLG00000008320
rosa_multiflora	Rmu_co8185456.1_g000001 Rmu_sc0001651.1_g000013 Rmu_sc0001651.1_g000014
rosa_roxburghii	Rroxscaffold_5G00356380
rosa_rugosa	Rorug04G0106400
rosa_samantha	Rh4BG170200 Rh4CG182300 Rh4DG165700
rosa_wichuraiana	Rw4G014290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	23
AciI	CCGC	8 cut(s)	21, 23, 35, 38, 167, 210, 213, 245
AclWI	GGATC	1 cut(s)	275
AfaI	GTAC	2 cut(s)	141, 173
AfiI	CCNNNNNNNGG	2 cut(s)	27, 297
AflII	CTTAAG	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	412
AjiI	CACGTC	1 cut(s)	121
AluBI	AGCT	3 cut(s)	148, 195, 220
AluI	AGCT	3 cut(s)	148, 195, 220
Alw26I	GTCTC	1 cut(s)	242
AlwI	GGATC	1 cut(s)	275
AlwNI	CAGNNNCTG	1 cut(s)	148
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	2 cut(s)	9, 227
AvaII	GGWCC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	207
BceAI	ACGGC	3 cut(s)	94, 223, 340
BcoDI	GTCTC	1 cut(s)	242
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	221
BfrI	CTTAAG	1 cut(s)	196
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	5 cut(s)	24, 36, 39, 211, 221
BlsI	GCNGC	5 cut(s)	25, 37, 40, 212, 222
Bme18I	GGWCC	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	21, 356
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 297
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	404
BseDI	CCNNGG	2 cut(s)	21, 356
BseLI	CCNNNNNNNGG	2 cut(s)	27, 297
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	27, 297
BsmAI	GTCTC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	267, 285
BspACI	CCGC	8 cut(s)	21, 23, 35, 38, 167, 210, 213, 245
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	352
BspFNI	CGCG	1 cut(s)	23
BspMAI	CTGCAG	1 cut(s)	225
BspPI	GGATC	1 cut(s)	275
BspTI	CTTAAG	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	404
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	2 cut(s)	21, 356
BssMI	GATC	2 cut(s)	267, 285
Bst4CI	ACNGT	4 cut(s)	46, 86, 295, 398
Bst6I	CTCTTC	1 cut(s)	68
BstAFI	CTTAAG	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	339
BstDSI	CCRYGG	2 cut(s)	21, 356
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	2 cut(s)	270, 288
BstMAI	GTCTC	1 cut(s)	242
BstMBI	GATC	2 cut(s)	267, 285
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 201, 210
BstNSI	RCATGY	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	221
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	109
BtgI	CCRYGG	2 cut(s)	21, 356
BtrI	CACGTC	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	182
CaiI	CAGNNNCTG	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	46
Cfr42I	CCGCGG	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	140, 172
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	8 cut(s)	81, 91, 109, 148, 195, 220, 355, 361
CviKI_1	RGCY	8 cut(s)	81, 91, 109, 148, 195, 220, 355, 361
CviQI	GTAC	2 cut(s)	140, 172
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	2 cut(s)	269, 287
DpnII	GATC	2 cut(s)	267, 285
DraI	TTTAAA	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	2 cut(s)	182, 260
Eco47I	GGWCC	1 cut(s)	46
FaeI	CATG	1 cut(s)	184
FaiI	YATR	2 cut(s)	71, 182
FatI	CATG	1 cut(s)	180
FauI	CCCGC	1 cut(s)	28
Fnu4HI	GCNGC	5 cut(s)	24, 36, 39, 211, 221
Fsp4HI	GCNGC	5 cut(s)	24, 36, 39, 211, 221
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	5 cut(s)	24, 36, 39, 211, 221
GsaI	CCCAGC	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	1 cut(s)	184
HinfI	GANTC	3 cut(s)	250, 306, 335
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	2 cut(s)	9, 227
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188III	TCNNGA	1 cut(s)	49
Hpy8I	GTNNAC	1 cut(s)	401
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	99
HpyCH4III	ACNGT	4 cut(s)	46, 86, 295, 398
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	3 cut(s)	184, 223, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 201, 210
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	184
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	267, 285
LmnI	GCTCC	3 cut(s)	145, 201, 371
LpnPI	CCDG	6 cut(s)	62, 123, 128, 134, 214, 326
Lsp1109I	GCAGC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	2 cut(s)	54, 72
MalI	GATC	2 cut(s)	269, 287
MboI	GATC	2 cut(s)	267, 285
MboII	GAAGA	3 cut(s)	55, 114, 136
MflI	RGATCY	1 cut(s)	285
MluCI	AATT	1 cut(s)	412
MlyI	GAGTC	2 cut(s)	244, 300
MseI	TTAA	3 cut(s)	197, 281, 381
MspA1I	CMGCKG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	196
MspI	CCGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	32, 201, 210
NdeII	GATC	2 cut(s)	267, 285
NlaIII	CATG	1 cut(s)	184
NmuCI	GTSAC	2 cut(s)	54, 72
NspI	RCATGY	1 cut(s)	184
PaeI	GCATGC	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	5 cut(s)	25, 37, 40, 212, 222
PleI	GAGTC	2 cut(s)	244, 300
PpsI	GAGTC	2 cut(s)	244, 300
PspFI	CCCAGC	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	225
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	1 cut(s)	285
RsaI	GTAC	2 cut(s)	141, 173
RsaNI	GTAC	2 cut(s)	140, 172
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	3 cut(s)	197, 281, 381
SatI	GCNGC	5 cut(s)	24, 36, 39, 211, 221
Sau3AI	GATC	2 cut(s)	267, 285
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	2 cut(s)	244, 300
SetI	ASST	9 cut(s)	123, 141, 150, 158, 197, 222, 237, 345, 394
SfcI	CTRYAG	1 cut(s)	221
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	2 cut(s)	196, 252
SmoI	CTYRAG	2 cut(s)	196, 252
SphI	GCATGC	1 cut(s)	184
Sse9I	AATT	1 cut(s)	412
SsiI	CCGC	8 cut(s)	21, 23, 35, 38, 167, 210, 213, 245
SspMI	CTAG	1 cut(s)	92
TaaI	ACNGT	4 cut(s)	46, 86, 295, 398
TaiI	ACGT	1 cut(s)	123
TasI	AATT	1 cut(s)	412
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	4 cut(s)	26, 38, 41, 213
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	3 cut(s)	197, 281, 381
Tru9I	TTAA	3 cut(s)	197, 281, 381
TseFI	GTSAC	2 cut(s)	54, 72
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	2 cut(s)	54, 72
Vha464I	CTTAAG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	46
XceI	RCATGY	1 cut(s)	184
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.