Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0012093

Physical Location & Seq

Genomic Coordinates Reverse (-)

2671726 .. 2672097

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1023200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATGAAAGTTCCGATTTTTGCCCTTCTGATCTGCCTCCTCTTCGTCGCGTCGAATGGGTACGGCGGCATGCTCGGGGGAAGGAAGGAGATCGAGAACGTGAAGACGAACAAGGAGGTTCAAGAGTTGGGGAGGTTTTCGGTAGAGGAGTATAACAGGCAGAGGGGTACCCAGAAGATGGACGGCGGCGGAGAGCTTCAGTTCTTGGAGGTGGTGGAGGCGCAGAGCCAGGTGGTTTCCGGGATCAAGTACTACGTCAAGGTGTCGGCGGTGAGGAATGGTGTCCACATGTTGTTCGATTCGGAGGTGGTGGTGAAGCCGTGGCTCCGTTCCAAGCAATTGCTCAACTTTGCCCCTCACGGCCCCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

124

Amino Acids

13.79

Weight (kDa)

9.3

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SQAPI	PF16845	32 - 118	6.1e-12	Aspartic acid proteinase inhibitor
Cystatin	PF00031	32 - 94	2e-10	Cystatin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31980
fragaria_vesca	FvH4_4g12780
malus_domestica	MD04G1023200.v1.1
prunus_persica	Prupe.1G014700_v2.0.a1 Prupe.1G172900_v2.0.a1 Prupe.3G089900_v2.0.a1
pyrus_communis	pycom13g29260
rosa_chinensis	RchiOBHm_Chr4g0402871 RchiOBHm_Chr4g0412111
rosa_laevigata	RLG00000008320
rosa_multiflora	Rmu_co8185456.1_g000001 Rmu_sc0001651.1_g000013 Rmu_sc0001651.1_g000014
rosa_roxburghii	Rroxscaffold_5G00356380
rosa_rugosa	Rorug04G0106400
rosa_samantha	Rh4BG170200 Rh4CG182300 Rh4DG165700
rosa_wichuraiana	Rw4G014290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	167
AccB1I	GGYRCC	1 cut(s)	167
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccII	CGCG	1 cut(s)	50
AciI	CCGC	4 cut(s)	66, 186, 189, 269
AclWI	GGATC	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	3 cut(s)	62, 169, 251
AfiI	CCNNNNNNNGG	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
AlwI	GGATC	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	361
Asp718I	GGTACC	1 cut(s)	167
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	362
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	283, 325
AvaI	CYCGRG	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	110
BccI	CCATC	1 cut(s)	172
BceAI	ACGGC	3 cut(s)	79, 199, 304
BciT130I	CCWGG	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	241
BisI	GCNGC	2 cut(s)	67, 187
BlsI	GCNGC	2 cut(s)	68, 188
BmcAI	AGTACT	1 cut(s)	251
Bme1390I	CCNGG	2 cut(s)	230, 241
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	3 cut(s)	169, 326, 364
BmrFI	CCNGG	2 cut(s)	230, 241
BpiI	GAAGAC	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseRI	GAGGAG	2 cut(s)	29, 161
Bsh1236I	CGCG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	363
BshNI	GGYRCC	1 cut(s)	167
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	178
BsnI	GGCC	1 cut(s)	363
BsoBI	CYCGRG	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	30, 90, 243
BspACI	CCGC	4 cut(s)	66, 186, 189, 269
BspANI	GGCC	1 cut(s)	363
BspFNI	CGCG	1 cut(s)	50
BspLI	GGNNCC	3 cut(s)	169, 326, 364
BspPI	GGATC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	167
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	3 cut(s)	30, 90, 243
Bst2UI	CCWGG	1 cut(s)	230
Bst6I	CTCTTC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	71
BstDSI	CCRYGG	1 cut(s)	320
BstFNI	CGCG	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	3 cut(s)	33, 93, 246
BstMBI	GATC	3 cut(s)	30, 90, 243
BstNI	CCWGG	1 cut(s)	230
BstNSI	RCATGY	2 cut(s)	73, 292
BstSCI	CCNGG	2 cut(s)	228, 239
BstUI	CGCG	1 cut(s)	50
BstV2I	GAAGAC	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	363
BtgI	CCRYGG	1 cut(s)	320
Cac8I	GCNNGC	1 cut(s)	71
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	362
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	3 cut(s)	61, 168, 250
CviAII	CATG	2 cut(s)	70, 289
CviJI	RGCY	5 cut(s)	196, 228, 319, 325, 363
CviKI_1	RGCY	5 cut(s)	196, 228, 319, 325, 363
CviQI	GTAC	3 cut(s)	61, 168, 250
DpnI	GATC	3 cut(s)	32, 92, 245
DpnII	GATC	3 cut(s)	30, 90, 243
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
EciI	GGCGGA	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	73, 292
FaiI	YATR	3 cut(s)	71, 153, 290
FatI	CATG	2 cut(s)	69, 288
Fnu4HI	GCNGC	2 cut(s)	67, 187
Fsp4HI	GCNGC	2 cut(s)	67, 187
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	2 cut(s)	67, 187
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	2 cut(s)	73, 292
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	2 cut(s)	283, 325
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	3 cut(s)	15, 30, 304
Hpy188III	TCNNGA	2 cut(s)	94, 122
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	2 cut(s)	50, 55
HpyAV	CCTTC	3 cut(s)	35, 75, 79
HpyCH4IV	ACGT	2 cut(s)	99, 255
HpySE526I	ACGT	2 cut(s)	99, 255
Hsp92II	CATG	2 cut(s)	73, 292
HspAI	GCGC	1 cut(s)	221
KpnI	GGTACC	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	30, 90, 243
LmnI	GCTCC	1 cut(s)	330
LpnPI	CCDG	5 cut(s)	142, 185, 215, 242, 253
MaeII	ACGT	2 cut(s)	99, 255
MalI	GATC	3 cut(s)	32, 92, 245
MboI	GATC	3 cut(s)	30, 90, 243
MboII	GAAGA	3 cut(s)	34, 115, 187
MfeI	CAATTG	1 cut(s)	338
MluCI	AATT	1 cut(s)	338
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	2 cut(s)	230, 241
MunI	CAATTG	1 cut(s)	338
MvaI	CCWGG	1 cut(s)	230
MvnI	CGCG	1 cut(s)	50
NciI	CCSGG	1 cut(s)	241
NdeII	GATC	3 cut(s)	30, 90, 243
NlaIII	CATG	2 cut(s)	73, 292
NlaIV	GGNNCC	3 cut(s)	169, 326, 364
NspI	RCATGY	2 cut(s)	73, 292
PaeI	GCATGC	1 cut(s)	73
PciI	ACATGT	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	299
PflMI	CCANNNNNTGG	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	68, 188
PscI	ACATGT	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	3 cut(s)	169, 326, 364
PspPI	GGNCC	1 cut(s)	362
RsaI	GTAC	3 cut(s)	62, 169, 251
RsaNI	GTAC	3 cut(s)	61, 168, 250
SatI	GCNGC	2 cut(s)	67, 187
Sau3AI	GATC	3 cut(s)	30, 90, 243
Sau96I	GGNCC	1 cut(s)	362
ScaI	AGTACT	1 cut(s)	251
ScrFI	CCNGG	2 cut(s)	230, 241
SetI	ASST	9 cut(s)	102, 120, 137, 198, 213, 234, 258, 264, 309
SphI	GCATGC	1 cut(s)	73
Sse9I	AATT	1 cut(s)	338
SsiI	CCGC	4 cut(s)	66, 186, 189, 269
StyD4I	CCNGG	2 cut(s)	228, 239
TaiI	ACGT	2 cut(s)	102, 258
TaqI	TCGA	3 cut(s)	53, 93, 297
TasI	AATT	1 cut(s)	338
TatI	WGTACW	1 cut(s)	249
TauI	GCSGC	2 cut(s)	69, 189
TfiI	GAWTC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	317
Van91I	CCANNNNNTGG	1 cut(s)	178
XceI	RCATGY	2 cut(s)	73, 292
ZrmI	AGTACT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.