Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0012093

Physical Location & Seq

Genomic Coordinates Forward (+)

33020774 .. 33021731

Gene Structure 958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG165700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCTTTGATAAAATCACCGGCGGCGAGGCTCGCGGCGGCGACGGTCCTGATCTCGCTCCTCTTTGCGGTGTCGCACGGCTACGGTGGCATAGTCGGCGGAAGGAGGCCGGTGGAGGACGTGAAGACGAACAAGGAGGTGCAGGAGCTGGGGAGGTTCTCGGTGGCGGAGTACAATCGCATGCAGAGGAAGAGCTTACGGAGCAACGGCGGTGGAGAGCTTCAGTTCAGGGAGGTAGTGGAGGCGCAGACTCAGGTGGTTTCGGGGATCAAGTACTATCTCAAGGTCTCCACAGTCAGGAATGGAGGAGCTCCTTTGTTGTTTGATTCCCAGGTTGTCGTCAAGCCGTGGCTCCGCTCCAAGCGATTGCTCAACTTTGCGCCTCACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

130

Amino Acids

14.31

Weight (kDa)

10.42

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	38 - 100	8.1e-09	Cystatin domain
SQAPI	PF16845	43 - 127	2.1e-12	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31980
fragaria_vesca	FvH4_4g12780
malus_domestica	MD04G1023200.v1.1
prunus_persica	Prupe.1G014700_v2.0.a1 Prupe.1G172900_v2.0.a1 Prupe.3G089900_v2.0.a1
pyrus_communis	pycom13g29260
rosa_chinensis	RchiOBHm_Chr4g0402871 RchiOBHm_Chr4g0412111
rosa_laevigata	RLG00000008320
rosa_multiflora	Rmu_co8185456.1_g000001 Rmu_sc0001651.1_g000013 Rmu_sc0001651.1_g000014
rosa_roxburghii	Rroxscaffold_5G00356380
rosa_rugosa	Rorug04G0106400
rosa_samantha	Rh4BG170200 Rh4CG182300 Rh4DG165700
rosa_wichuraiana	Rw4G014290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	357
AccII	CGCG	1 cut(s)	35
AciI	CCGC	8 cut(s)	23, 35, 38, 68, 99, 167, 210, 355
AclWI	GGATC	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	2 cut(s)	173, 275
AfiI	CCNNNNNNNGG	2 cut(s)	67, 297
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	4 cut(s)	148, 195, 220, 311
AluI	AGCT	4 cut(s)	148, 195, 220, 311
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	1 cut(s)	275
AlwNI	CAGNNNCTG	1 cut(s)	148
AoxI	GGCC	1 cut(s)	107
AspLEI	GCGC	2 cut(s)	247, 382
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	9
AvaII	GGWCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	313
BceAI	ACGGC	3 cut(s)	94, 223, 331
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	292
BisI	GCNGC	3 cut(s)	24, 36, 39
BlsI	GCNGC	3 cut(s)	25, 37, 40
BmcAI	AGTACT	1 cut(s)	275
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	353
BmrFI	CCNGG	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	2 cut(s)	330, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 297
Bse118I	RCCGGY	2 cut(s)	19, 109
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	330, 347
BseLI	CCNNNNNNNGG	2 cut(s)	67, 297
BseMII	CTCAG	1 cut(s)	266
BseRI	GAGGAG	2 cut(s)	50, 321
BseYI	CCCAGC	1 cut(s)	148
BsgI	GTGCAG	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	20, 110
BslI	CCNNNNNNNGG	2 cut(s)	67, 297
BsmAI	GTCTC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	109
Bso31I	GGTCTC	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	51, 267
BspACI	CCGC	8 cut(s)	23, 35, 38, 68, 99, 167, 210, 355
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	275
BspQI	GCTCTTC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	357
BsrFI	RCCGGY	2 cut(s)	19, 109
BssAI	RCCGGY	2 cut(s)	19, 109
BssECI	CCNNGG	2 cut(s)	330, 347
BssMI	GATC	2 cut(s)	51, 267
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	3 cut(s)	46, 86, 295
Bst6I	CTCTTC	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	33, 182
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	347
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	247, 382
BstKTI	GATC	2 cut(s)	54, 270
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	2 cut(s)	51, 267
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 87, 96, 201
BstNI	CCWGG	1 cut(s)	332
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	35
BstV2I	GAAGAC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	347
BtrI	CACGTC	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	33, 182
CaiI	CAGNNNCTG	1 cut(s)	148
CfoI	GCGC	2 cut(s)	247, 382
Cfr10I	RCCGGY	2 cut(s)	19, 109
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	172, 274
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviAII	CATG	1 cut(s)	181
CviQI	GTAC	2 cut(s)	172, 274
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	53, 269
DpnII	GATC	2 cut(s)	51, 267
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	2 cut(s)	114, 182
Ecl136II	GAGCTC	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	313
Eco31I	GGTCTC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	313
FaeI	CATG	1 cut(s)	184
FaiI	YATR	2 cut(s)	92, 182
FatI	CATG	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	24, 36, 39
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	3 cut(s)	24, 36, 39
GlaI	GCGC	2 cut(s)	246, 381
GluI	GCNGC	3 cut(s)	24, 36, 39
GsaI	CCCAGC	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	2 cut(s)	20, 110
HhaI	GCGC	2 cut(s)	247, 382
Hin1II	CATG	1 cut(s)	184
Hin6I	GCGC	2 cut(s)	245, 380
HinP1I	GCGC	2 cut(s)	245, 380
HinfI	GANTC	2 cut(s)	250, 326
HpaII	CCGG	2 cut(s)	20, 110
HphI	GGTGA	1 cut(s)	9
Hpy188III	TCNNGA	2 cut(s)	49, 298
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	3 cut(s)	46, 86, 295
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	2 cut(s)	142, 184
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 87, 96, 201
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	184
HspAI	GCGC	2 cut(s)	245, 380
Kzo9I	GATC	2 cut(s)	51, 267
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	7 cut(s)	63, 145, 201, 308, 316, 357, 362
MaeII	ACGT	1 cut(s)	120
MalI	GATC	2 cut(s)	53, 269
MbiI	CCGCTC	1 cut(s)	357
MboI	GATC	2 cut(s)	51, 267
MboII	GAAGA	2 cut(s)	136, 202
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	1 cut(s)	388
MlyI	GAGTC	1 cut(s)	244
MseI	TTAA	1 cut(s)	391
MspI	CCGG	2 cut(s)	20, 110
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	4 cut(s)	32, 87, 96, 201
NdeII	GATC	2 cut(s)	51, 267
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	1 cut(s)	353
NspI	RCATGY	1 cut(s)	184
PaeI	GCATGC	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	25, 37, 40
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	353
PspPI	GGNCC	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	148
RsaI	GTAC	2 cut(s)	173, 275
RsaNI	GTAC	2 cut(s)	172, 274
SacI	GAGCTC	1 cut(s)	313
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	391
SatI	GCNGC	3 cut(s)	24, 36, 39
Sau3AI	GATC	2 cut(s)	51, 267
Sau96I	GGNCC	1 cut(s)	46
ScaI	AGTACT	1 cut(s)	275
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	332
SduI	GDGCHC	1 cut(s)	313
SgrAI	CRCCGGYG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SphI	GCATGC	1 cut(s)	184
Sse9I	AATT	1 cut(s)	388
SsiI	CCGC	8 cut(s)	23, 35, 38, 68, 99, 167, 210, 355
SstI	GAGCTC	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	330
TaaI	ACNGT	3 cut(s)	46, 86, 295
TaiI	ACGT	1 cut(s)	123
TasI	AATT	1 cut(s)	388
TatI	WGTACW	2 cut(s)	171, 273
TauI	GCSGC	3 cut(s)	26, 38, 41
TfiI	GAWTC	1 cut(s)	326
Tru1I	TTAA	1 cut(s)	391
Tru9I	TTAA	1 cut(s)	391
TspGWI	ACGGA	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	46
XceI	RCATGY	1 cut(s)	184
ZrmI	AGTACT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.