Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000492

Physical Location & Seq

Genomic Coordinates Reverse (-)

16434962 .. 16440162

Gene Structure 5201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0106400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCCTTGAGAACAGTGACGAGGAAGATAGGGAGTAAACTGTTACCCAGGTTTTGTCCTGCATCTCTATTGCATTCTCATGCCACAAGCTTTGGATTCAAGGAAGTACGGGAAGAGGAAAAAAGTCAAATGGTTGGTAATGTCTTCAGCAATGTTGCTTCAAACTATGATACAATGAACGATTTGATGAGTGGAGGATTACACAGATTATGGAAGCATAGATTGGTTTCCAAACTGAATCCTTTTCCTGGAATGAACCATCTTGATGTGGCTGGTGGAACAGGTGATGTTGCTTTCAGAATACTAGACAGTATAAACAGCATCAAACGTAGAGCTTTGCTGAATGTTCTTGAAGATGATTTACAGGAAGAAACTAAGGTGTATGTATGTGACATCAATCCCAACATGTTGAATGTTGGTAAAAAGCGGGCCTTGCAGAGAGGTCTTGGAGAAGACAAATCCCTTCTATGGGTGGAGGGAGATGCAGAAGCCCTGAGTTTCGGAGATAATACAATGGATGGTTACACAATTGCATTTGGGATCCGGAATGTCACACACATAGAGAAAGCACTTTCTGAAGCTTATAGGGTACTAAAACGGGGAGGAAGGTTCCTGTGCCTTGAACTCAGCCATGTAGAGGTACCTGTATTCAAAGACTTCTATGACTTTTATTCATTCTCAATCATTCCCACCCTAGGAGAGCTAGTTGCAGGAGATAGAGAATCTTATCAGTACTTGGTAGAGAGTATTCGTCGCTTTCCACCACAGGAGACATTTGCTTCAATGATTGCAGATGCAGGTTTCCAGAAGGTTGAGTATGAAAATCTAGTTGGAGGAGTGGTAGCGATTCATTCAGGGTTGAAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005488 GO:0005515 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0019899 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

ko04970 map04970

Pfam Domains

Protein Families

SQAPI

Protein Analysis

289

Amino Acids

32.37

Weight (kDa)

6.46

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ubie_methyltran	PF01209	40 - 288	2e-84	ubiE/COQ5 methyltransferase family
Methyltransf_31	PF13847	83 - 210	3.5e-07	Methyltransferase domain
Methyltransf_12	PF08242	88 - 204	2.5e-07	Methyltransferase domain
Methyltransf_25	PF13649	121 - 202	1.1e-11	Methyltransferase domain
Methyltransf_11	PF08241	125 - 206	6.5e-14	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG01250
fragaria_vesca	FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica	MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica	Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis	pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis	RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata	RLG00000007836 RLG00000025145
rosa_multiflora	Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii	Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa	Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha	Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	788
Acc65I	GGTACC	1 cut(s)	640
AccB1I	GGYRCC	1 cut(s)	640
AccIII	TCCGGA	1 cut(s)	543
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	2 cut(s)	535, 548
AcsI	RAATTY	1 cut(s)	864
AcuI	CTGAAG	2 cut(s)	130, 597
AfaI	GTAC	4 cut(s)	108, 591, 642, 734
AfiI	CCNNNNNNNGG	5 cut(s)	248, 468, 469, 637, 695
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	8 cut(s)	100, 162, 353, 412, 623, 652, 783, 862
AjnI	CCWGG	2 cut(s)	47, 247
AjuI	GAANNNNNNNTTGG	4 cut(s)	206, 238, 813, 845
AluBI	AGCT	4 cut(s)	90, 335, 581, 703
AluI	AGCT	4 cut(s)	90, 335, 581, 703
Alw26I	GTCTC	1 cut(s)	764
AlwI	GGATC	2 cut(s)	535, 548
Aor13HI	TCCGGA	1 cut(s)	543
AoxI	GGCC	2 cut(s)	3, 429
ApoI	RAATTY	1 cut(s)	864
Asp718I	GGTACC	1 cut(s)	640
AspA2I	CCTAGG	1 cut(s)	694
AspS9I	GGNCC	1 cut(s)	429
AsuHPI	GGTGA	1 cut(s)	296
AvrII	CCTAGG	1 cut(s)	694
BamHI	GGATCC	1 cut(s)	540
BanI	GGYRCC	1 cut(s)	640
BarI	GAAGNNNNNNTAC	2 cut(s)	345, 377
BbsI	GAAGAC	2 cut(s)	136, 459
BccI	CCATC	2 cut(s)	267, 512
BciT130I	CCWGG	2 cut(s)	49, 249
BcoDI	GTCTC	1 cut(s)	764
BfaI	CTAG	4 cut(s)	305, 695, 704, 827
BfuAI	ACCTGC	1 cut(s)	788
BlnI	CCTAGG	1 cut(s)	694
BmcAI	AGTACT	1 cut(s)	734
Bme1390I	CCNGG	2 cut(s)	49, 249
BmgT120I	GGNCC	1 cut(s)	429
BmiI	GGNNCC	3 cut(s)	542, 611, 642
BmrFI	CCNGG	2 cut(s)	49, 249
BmsI	GCATC	4 cut(s)	71, 330, 472, 784
BpiI	GAAGAC	2 cut(s)	136, 459
BpuEI	CTTGAG	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	47, 694
BsaWI	WCCGGW	1 cut(s)	543
BsaXI	ACNNNNNCTCC	4 cut(s)	690, 720, 825, 855
Bsc4I	CCNNNNNNNGG	5 cut(s)	248, 468, 469, 637, 695
Bse3DI	GCAATG	1 cut(s)	157
BseAI	TCCGGA	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	49, 249
BseDI	CCNNGG	2 cut(s)	47, 694
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	5 cut(s)	248, 468, 469, 637, 695
BseMI	GCAATG	1 cut(s)	157
BseMII	CTCAG	2 cut(s)	485, 640
BseRI	GAGGAG	1 cut(s)	849
BshFI	GGCC	2 cut(s)	5, 431
BshNI	GGYRCC	1 cut(s)	640
BsiSI	CCGG	1 cut(s)	544
BslI	CCNNNNNNNGG	5 cut(s)	248, 468, 469, 637, 695
BsmAI	GTCTC	1 cut(s)	764
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	5, 431
Bsp13I	TCCGGA	1 cut(s)	543
Bsp143I	GATC	1 cut(s)	540
BspACI	CCGC	1 cut(s)	427
BspANI	GGCC	2 cut(s)	5, 431
BspCNI	CTCAG	2 cut(s)	486, 639
BspEI	TCCGGA	1 cut(s)	543
BspLI	GGNNCC	3 cut(s)	542, 611, 642
BspMI	ACCTGC	1 cut(s)	788
BspPI	GGATC	2 cut(s)	535, 548
BspT107I	GGYRCC	1 cut(s)	640
BsrDI	GCAATG	1 cut(s)	157
BssECI	CCNNGG	2 cut(s)	47, 694
BssMI	GATC	1 cut(s)	540
BssT1I	CCWWGG	1 cut(s)	694
Bst2UI	CCWGG	2 cut(s)	49, 249
Bst4CI	ACNGT	3 cut(s)	16, 42, 311
Bst6I	CTCTTC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	3 cut(s)	375, 494, 626
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	1 cut(s)	543
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	1 cut(s)	540
BstMWI	GCNNNNNNNGC	1 cut(s)	433
BstNI	CCWGG	2 cut(s)	49, 249
BstNSI	RCATGY	1 cut(s)	409
BstSCI	CCNGG	2 cut(s)	47, 247
BstV2I	GAAGAC	2 cut(s)	136, 459
BstX2I	RGATCY	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	540
BsuRI	GGCC	2 cut(s)	5, 431
BtsCI	GGATG	1 cut(s)	523
BtsIMutI	CAGTG	1 cut(s)	21
BveI	ACCTGC	1 cut(s)	788
Cac8I	GCNNGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	429
Csp6I	GTAC	4 cut(s)	107, 590, 641, 733
CspCI	CAANNNNNGTGG	2 cut(s)	73, 108
CviAII	CATG	3 cut(s)	80, 406, 632
CviJI	RGCY	9 cut(s)	5, 90, 272, 335, 431, 491, 581, 630, 703
CviKI_1	RGCY	9 cut(s)	5, 90, 272, 335, 431, 491, 581, 630, 703
CviQI	GTAC	4 cut(s)	107, 590, 641, 733
DdeI	CTNAG	3 cut(s)	375, 494, 626
DpnI	GATC	1 cut(s)	542
DpnII	GATC	1 cut(s)	540
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	694
Eco57I	CTGAAG	2 cut(s)	130, 597
EcoRII	CCWGG	2 cut(s)	47, 247
EcoT14I	CCWWGG	1 cut(s)	694
ErhI	CCWWGG	1 cut(s)	694
FaeI	CATG	3 cut(s)	83, 409, 635
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FatI	CATG	3 cut(s)	79, 405, 631
FauI	CCCGC	1 cut(s)	420
FokI	GGATG	1 cut(s)	530
FspBI	CTAG	4 cut(s)	305, 695, 704, 827
HaeIII	GGCC	2 cut(s)	5, 431
HapII	CCGG	1 cut(s)	544
Hin1II	CATG	3 cut(s)	83, 409, 635
HindIII	AAGCTT	2 cut(s)	88, 579
HinfI	GANTC	4 cut(s)	96, 238, 722, 847
HpaII	CCGG	1 cut(s)	544
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	3 cut(s)	299, 503, 577
Hpy188III	TCNNGA	4 cut(s)	263, 350, 544, 805
Hpy8I	GTNNAC	1 cut(s)	38
Hpy99I	CGWCG	1 cut(s)	756
HpyAV	CCTTC	3 cut(s)	473, 600, 802
HpyCH4III	ACNGT	3 cut(s)	16, 42, 311
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	8 cut(s)	62, 73, 436, 485, 533, 710, 791, 797
HpyF10VI	GCNNNNNNNGC	1 cut(s)	433
HpyF3I	CTNAG	3 cut(s)	375, 494, 626
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	3 cut(s)	83, 409, 635
Kpn2I	TCCGGA	1 cut(s)	543
KpnI	GGTACC	1 cut(s)	644
Kzo9I	GATC	1 cut(s)	540
LweI	GCATC	4 cut(s)	71, 330, 472, 784
MaeI	CTAG	4 cut(s)	305, 695, 704, 827
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	5 cut(s)	16, 42, 389, 521, 550
MalI	GATC	1 cut(s)	542
MboI	GATC	1 cut(s)	540
MboII	GAAGA	6 cut(s)	37, 125, 136, 365, 380, 464
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	1 cut(s)	540
MluCI	AATT	2 cut(s)	528, 864
MmeI	TCCRAC	1 cut(s)	811
MnlI	CCTC	8 cut(s)	15, 109, 188, 434, 469, 596, 631, 827
MroI	TCCGGA	1 cut(s)	543
MslI	CAYNNNNRTG	2 cut(s)	78, 264
MspI	CCGG	1 cut(s)	544
MspR9I	CCNGG	2 cut(s)	49, 249
MunI	CAATTG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	2 cut(s)	49, 249
MwoI	GCNNNNNNNGC	1 cut(s)	433
NdeII	GATC	1 cut(s)	540
NlaIII	CATG	3 cut(s)	83, 409, 635
NlaIV	GGNNCC	3 cut(s)	542, 611, 642
NmuCI	GTSAC	3 cut(s)	16, 389, 550
NspI	RCATGY	1 cut(s)	409
PciI	ACATGT	1 cut(s)	405
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	4 cut(s)	96, 238, 722, 847
PfoI	TCCNGGA	1 cut(s)	247
PscI	ACATGT	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	47, 247
PspGI	CCWGG	2 cut(s)	47, 247
PspN4I	GGNNCC	3 cut(s)	542, 611, 642
PspPI	GGNCC	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	540
RsaI	GTAC	4 cut(s)	108, 591, 642, 734
RsaNI	GTAC	4 cut(s)	107, 590, 641, 733
RseI	CAYNNNNRTG	2 cut(s)	78, 264
Sau3AI	GATC	1 cut(s)	540
Sau96I	GGNCC	1 cut(s)	429
ScaI	AGTACT	1 cut(s)	734
ScrFI	CCNGG	2 cut(s)	49, 249
SfaNI	GCATC	4 cut(s)	71, 330, 472, 784
SmiMI	CAYNNNNRTG	2 cut(s)	78, 264
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	2 cut(s)	528, 864
SsiI	CCGC	1 cut(s)	427
SspMI	CTAG	4 cut(s)	305, 695, 704, 827
StyD4I	CCNGG	2 cut(s)	47, 247
StyI	CCWWGG	1 cut(s)	694
TaaI	ACNGT	3 cut(s)	16, 42, 311
TaiI	ACGT	1 cut(s)	331
TasI	AATT	2 cut(s)	528, 864
TatI	WGTACW	1 cut(s)	732
TfiI	GAWTC	4 cut(s)	96, 238, 722, 847
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	3 cut(s)	16, 389, 550
Tsp45I	GTSAC	3 cut(s)	16, 389, 550
TspDTI	ATGAA	5 cut(s)	191, 269, 663, 834, 839
TspRI	CASTG	1 cut(s)	21
XapI	RAATTY	1 cut(s)	864
XceI	RCATGY	1 cut(s)	409
XmaJI	CCTAGG	1 cut(s)	694
XspI	CTAG	4 cut(s)	305, 695, 704, 827
ZrmI	AGTACT	1 cut(s)	734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.