Rmu_sc0011095.1_g000004

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011095.1
OG0000492
Physical Location & Seq
Reverse (-)
27755 .. 29412
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011095.1_g000004.1.cds

Sequence Viewer

Length: 1218 bp
atgatggacactatctatggcattatggatatggactgcgccatccctaggctggtggtggatggaggcggtgccttaggcagctgcgtcgtaattaaggtgccatatggcaagtggaacttgggctattccatagatgtccttctgaaaggcatgagatggattattggtaatggcttggatgttaagttttggactttcaactgggctttccactttccgattatagaccttattcctcctggtagtagaaataatgttgaccttgatgagaatgtctgtgatttcatccgtaatggttgttgggatatgtttaagcttagaagtgttcttaatgatgatattgttaattcgattgttagtattcctcttcctgccaataattatccagatgaatttgtttggggtccttccccaagtggtattttttctattaagtcagctacttggattcaaaatagttcaactactcctcactcgagactaaaaattttgaataatatttggaaactcaatatgcctcctaaggctaagatttttgcttggcttttggctagaggtcgtctcaaaacaagagtaagattagctagattttcatttggtttggatacttcctgccctttttgtaggcaaggggatgaggatattaatcacctcttcttctcctgcccctttgcctacagagtttggcagactgctagtattaactatgtgaatttccactgctttgctgattggtttgattcttggtttagaaaaggttatgataaaccttttacggagaatgctattatgatctgctggaagatttgggaagccaggaatgatctcattttcaggcagaagacactcatccattctgtagttgtccattatgctgcaaccgttgaggacaattacaggaccaacaatcccatccatgctcaggcctgtcctattaactatggcaccattcgttggattgctcccaagccgggttttctcaagctcaattttgacggttctgtgctcaataacaaacaggcggcaataggttttgttctaagagaccacgatgcttctcctatctttgcggcctcaagatccatcggttgttcttcagttccagtggctgaaggtagtgcaattggttatcgatgccatcaacagaaagtgctcggttccttggcgtctccgaacccttatcagagacattgtttcccttgcaagccattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

405

Amino Acids

46.02

Weight (kDa)

8.93

Isoelectric Point (pI)

34.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 71, 100, 947
AccB7I CCANNNNNTGG 1 cut(s) 957
AciI CCGC 3 cut(s) 69, 1025, 1073
AclWI GGATC 1 cut(s) 1077
AcsI RAATTY 3 cut(s) 395, 489, 715
AcuI CTGAAG 2 cut(s) 1083, 1134
AcyI GRCGYC 1 cut(s) 1169
AfiI CCNNNNNNNGG 5 cut(s) 48, 52, 925, 957, 974
AgsI TTSAA 4 cut(s) 202, 455, 465, 496
AjnI CCWGG 2 cut(s) 241, 818
AluBI AGCT 5 cut(s) 84, 319, 443, 587, 988
AluI AGCT 5 cut(s) 84, 319, 443, 587, 988
Alw21I GWGCWC 2 cut(s) 1011, 1158
Alw26I GTCTC 5 cut(s) 475, 569, 1041, 1176, 1183
AlwI GGATC 1 cut(s) 1077
AlwNI CAGNNNCTG 1 cut(s) 1112
Ama87I CYCGRG 1 cut(s) 478
AoxI GGCC 2 cut(s) 927, 1074
ApeKI GCWGC 3 cut(s) 81, 84, 878
ApoI RAATTY 3 cut(s) 395, 489, 715
AseI ATTAAT 1 cut(s) 648
AspA2I CCTAGG 1 cut(s) 47
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 407, 903
AsuC2I CCSGG 1 cut(s) 975
AsuHPI GGTGA 1 cut(s) 644
AvaI CYCGRG 1 cut(s) 478
AvaII GGWCC 2 cut(s) 407, 903
AvrII CCTAGG 1 cut(s) 47
AxyI CCTNAGG 2 cut(s) 76, 525
BanI GGYRCC 3 cut(s) 71, 100, 947
BbsI GAAGAC 1 cut(s) 851
Bbv12I GWGCWC 2 cut(s) 1011, 1158
BbvI GCAGC 3 cut(s) 71, 93, 865
BccI CCATC 6 cut(s) 50, 56, 153, 923, 1094, 1149
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BciT130I CCWGG 2 cut(s) 243, 820
BciVI GTATCC 1 cut(s) 601
BcnI CCSGG 1 cut(s) 975
BcoDI GTCTC 5 cut(s) 475, 569, 1041, 1176, 1183
BfaI CTAG 4 cut(s) 48, 555, 588, 699
BfmI CTRYAG 2 cut(s) 679, 861
BfuI GTATCC 1 cut(s) 601
BisI GCNGC 5 cut(s) 82, 85, 879, 1026, 1074
BlnI CCTAGG 1 cut(s) 47
BlsI GCNGC 5 cut(s) 83, 86, 880, 1027, 1075
Bme1390I CCNGG 3 cut(s) 243, 820, 975
Bme18I GGWCC 2 cut(s) 407, 903
BmeT110I CYCGRG 1 cut(s) 478
BmgT120I GGNCC 2 cut(s) 407, 903
BmiI GGNNCC 5 cut(s) 73, 102, 408, 949, 1162
BmrFI CCNGG 3 cut(s) 243, 820, 975
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 2 cut(s) 1045, 1127
BmuI ACTGGG 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 851
BplI GAGNNNNNCTC 2 cut(s) 549, 581
Bpu10I CCTNAGC 1 cut(s) 924
BpuEI CTTGAG 2 cut(s) 968, 1063
BpuMI CCSGG 1 cut(s) 975
Bsa29I ATCGAT 1 cut(s) 1135
BsaBI GATNNNNATC 1 cut(s) 648
BsaHI GRCGYC 1 cut(s) 1169
BsaI GGTCTC 1 cut(s) 1041
BsaJI CCNNGG 2 cut(s) 47, 1164
Bsc4I CCNNNNNNNGG 5 cut(s) 48, 52, 925, 957, 974
Bse1I ACTGG 2 cut(s) 209, 1106
Bse21I CCTNAGG 2 cut(s) 76, 525
Bse8I GATNNNNATC 1 cut(s) 648
BseBI CCWGG 2 cut(s) 243, 820
BseCI ATCGAT 1 cut(s) 1135
BseDI CCNNGG 2 cut(s) 47, 1164
BseGI GGATG 7 cut(s) 42, 67, 187, 288, 643, 852, 915
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 5 cut(s) 48, 52, 925, 957, 974
BseMII CTCAG 1 cut(s) 938
BseNI ACTGG 2 cut(s) 209, 1106
BseRI GAGGAG 1 cut(s) 462
BseXI GCAGC 3 cut(s) 71, 93, 865
BshFI GGCC 2 cut(s) 929, 1076
BshNI GGYRCC 3 cut(s) 71, 100, 947
BshVI ATCGAT 1 cut(s) 1135
BsiHKAI GWGCWC 2 cut(s) 1011, 1158
BsiHKCI CYCGRG 1 cut(s) 478
BsiSI CCGG 1 cut(s) 974
BslI CCNNNNNNNGG 5 cut(s) 48, 52, 925, 957, 974
BsmAI GTCTC 5 cut(s) 475, 569, 1041, 1176, 1183
BsmBI CGTCTC 2 cut(s) 569, 1176
BsmI GAATGC 1 cut(s) 790
BsnI GGCC 2 cut(s) 929, 1076
Bso31I GGTCTC 1 cut(s) 1041
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 2 cut(s) 1011, 1158
Bsp143I GATC 3 cut(s) 795, 826, 1082
BspACI CCGC 3 cut(s) 69, 1025, 1073
BspANI GGCC 2 cut(s) 929, 1076
BspCNI CTCAG 1 cut(s) 937
BspDI ATCGAT 1 cut(s) 1135
BspLI GGNNCC 5 cut(s) 73, 102, 408, 949, 1162
BspPI GGATC 1 cut(s) 1077
BspT107I GGYRCC 3 cut(s) 71, 100, 947
BspTNI GGTCTC 1 cut(s) 1041
BsrI ACTGG 2 cut(s) 209, 1106
BssECI CCNNGG 2 cut(s) 47, 1164
BssMI GATC 3 cut(s) 795, 826, 1082
BssNI GRCGYC 1 cut(s) 1169
BssT1I CCWWGG 2 cut(s) 47, 1164
Bst2UI CCWGG 2 cut(s) 243, 820
Bst4CI ACNGT 2 cut(s) 886, 1001
Bst6I CTCTTC 2 cut(s) 375, 662
BstACI GRCGYC 1 cut(s) 1169
BstC8I GCNNGC 1 cut(s) 1208
BstDEI CTNAG 6 cut(s) 76, 320, 525, 531, 924, 1043
BstF5I GGATG 7 cut(s) 42, 67, 187, 288, 643, 852, 915
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 3 cut(s) 798, 829, 1085
BstMAI GTCTC 5 cut(s) 475, 569, 1041, 1176, 1183
BstMBI GATC 3 cut(s) 795, 826, 1082
BstNI CCWGG 2 cut(s) 243, 820
BstSCI CCNGG 3 cut(s) 241, 818, 973
BstSFI CTRYAG 2 cut(s) 679, 861
BstV1I GCAGC 3 cut(s) 71, 93, 865
BstV2I GAAGAC 1 cut(s) 851
BstX2I RGATCY 1 cut(s) 1082
BstYI RGATCY 1 cut(s) 1082
Bsu15I ATCGAT 1 cut(s) 1135
Bsu36I CCTNAGG 2 cut(s) 76, 525
BsuI GTATCC 1 cut(s) 601
BsuRI GGCC 2 cut(s) 929, 1076
BsuTUI ATCGAT 1 cut(s) 1135
BtsCI GGATG 7 cut(s) 42, 67, 187, 288, 643, 852, 915
BtsI GCAGTG 1 cut(s) 721
BtsIMutI CAGTG 2 cut(s) 721, 1113
Cac8I GCNNGC 1 cut(s) 1208
CaiI CAGNNNCTG 1 cut(s) 1112
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 407, 903
ClaI ATCGAT 1 cut(s) 1135
CseI GACGC 2 cut(s) 76, 1158
CviAII CATG 2 cut(s) 154, 920
DdeI CTNAG 6 cut(s) 76, 320, 525, 531, 924, 1043
DpnI GATC 3 cut(s) 797, 828, 1084
DpnII GATC 3 cut(s) 795, 826, 1082
Eam1104I CTCTTC 2 cut(s) 375, 662
EarI CTCTTC 2 cut(s) 375, 662
Eco130I CCWWGG 2 cut(s) 47, 1164
Eco147I AGGCCT 1 cut(s) 929
Eco31I GGTCTC 1 cut(s) 1041
Eco47I GGWCC 2 cut(s) 407, 903
Eco57I CTGAAG 2 cut(s) 1083, 1134
Eco81I CCTNAGG 2 cut(s) 76, 525
Eco88I CYCGRG 1 cut(s) 478
EcoO109I RGGNCCY 1 cut(s) 407
EcoRII CCWGG 2 cut(s) 241, 818
EcoT14I CCWWGG 2 cut(s) 47, 1164
ErhI CCWWGG 2 cut(s) 47, 1164
Esp3I CGTCTC 2 cut(s) 569, 1176
FaeI CATG 2 cut(s) 157, 923
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FatI CATG 2 cut(s) 153, 919
FauNDI CATATG 1 cut(s) 106
Fnu4HI GCNGC 5 cut(s) 82, 85, 879, 1026, 1074
FokI GGATG 7 cut(s) 29, 74, 194, 275, 650, 839, 902
Fsp4HI GCNGC 5 cut(s) 82, 85, 879, 1026, 1074
FspBI CTAG 4 cut(s) 48, 555, 588, 699
GlaI GCGC 1 cut(s) 40
GluI GCNGC 5 cut(s) 82, 85, 879, 1026, 1074
HaeIII GGCC 2 cut(s) 929, 1076
HapII CCGG 1 cut(s) 974
HgaI GACGC 2 cut(s) 76, 1158
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 1169
Hin1II CATG 2 cut(s) 157, 923
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 2 cut(s) 451, 743
HpaII CCGG 1 cut(s) 974
HphI GGTGA 1 cut(s) 644
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 4 cut(s) 147, 222, 1176, 1188
Hpy188III TCNNGA 3 cut(s) 389, 480, 1080
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 3 cut(s) 152, 420, 1109
HpyCH4III ACNGT 2 cut(s) 886, 1001
HpyCH4V TGCA 3 cut(s) 881, 1124, 1206
HpyF3I CTNAG 6 cut(s) 76, 320, 525, 531, 924, 1043
Hsp92I GRCGYC 1 cut(s) 1169
Hsp92II CATG 2 cut(s) 157, 923
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 3 cut(s) 795, 826, 1082
LmnI GCTCC 1 cut(s) 970
Lsp1109I GCAGC 3 cut(s) 71, 93, 865
LweI GCATC 2 cut(s) 1045, 1127
MaeI CTAG 4 cut(s) 48, 555, 588, 699
MalI GATC 3 cut(s) 797, 828, 1084
MboI GATC 3 cut(s) 795, 826, 1082
MboII GAAGA 6 cut(s) 362, 649, 652, 817, 856, 1089
MfeI CAATTG 1 cut(s) 1125
MflI RGATCY 1 cut(s) 1082
MhlI GDGCHC 2 cut(s) 1011, 1158
MluCI AATT 9 cut(s) 93, 349, 382, 395, 489, 715, 895, 991, 1125
MmeI TCCRAC 1 cut(s) 938
MseI TTAA 9 cut(s) 96, 186, 315, 333, 348, 435, 648, 705, 939
MspA1I CMGCKG 1 cut(s) 84
MspI CCGG 1 cut(s) 974
MspR9I CCNGG 3 cut(s) 243, 820, 975
MunI CAATTG 1 cut(s) 1125
Mva1269I GAATGC 1 cut(s) 790
MvaI CCWGG 2 cut(s) 243, 820
NciI CCSGG 1 cut(s) 975
NdeI CATATG 1 cut(s) 106
NdeII GATC 3 cut(s) 795, 826, 1082
NlaIII CATG 2 cut(s) 157, 923
NlaIV GGNNCC 5 cut(s) 73, 102, 408, 949, 1162
PaeR7I CTCGAG 1 cut(s) 478
PceI AGGCCT 1 cut(s) 929
PctI GAATGC 1 cut(s) 790
PfeI GAWTC 2 cut(s) 451, 743
PflMI CCANNNNNTGG 1 cut(s) 957
PkrI GCNGC 5 cut(s) 83, 86, 880, 1027, 1075
PpuMI RGGWCCY 1 cut(s) 407
PshBI ATTAAT 1 cut(s) 648
Psp5II RGGWCCY 1 cut(s) 407
Psp6I CCWGG 2 cut(s) 241, 818
PspGI CCWGG 2 cut(s) 241, 818
PspN4I GGNNCC 5 cut(s) 73, 102, 408, 949, 1162
PspPI GGNCC 2 cut(s) 407, 903
PspPPI RGGWCCY 1 cut(s) 407
PstNI CAGNNNCTG 1 cut(s) 1112
PsuI RGATCY 1 cut(s) 1082
PvuII CAGCTG 1 cut(s) 84
SaqAI TTAA 9 cut(s) 96, 186, 315, 333, 348, 435, 648, 705, 939
SatI GCNGC 5 cut(s) 82, 85, 879, 1026, 1074
Sau3AI GATC 3 cut(s) 795, 826, 1082
Sau96I GGNCC 2 cut(s) 407, 903
ScrFI CCNGG 3 cut(s) 243, 820, 975
SduI GDGCHC 2 cut(s) 1011, 1158
SfaNI GCATC 2 cut(s) 1045, 1127
SfcI CTRYAG 2 cut(s) 679, 861
Sfr274I CTCGAG 1 cut(s) 478
SinI GGWCC 2 cut(s) 407, 903
SlaI CTCGAG 1 cut(s) 478
SmlI CTYRAG 3 cut(s) 478, 983, 1078
SmoI CTYRAG 3 cut(s) 478, 983, 1078
Sse9I AATT 9 cut(s) 93, 349, 382, 395, 489, 715, 895, 991, 1125
SseBI AGGCCT 1 cut(s) 929
SsiI CCGC 3 cut(s) 69, 1025, 1073
SspI AATATT 1 cut(s) 502
SspMI CTAG 4 cut(s) 48, 555, 588, 699
StuI AGGCCT 1 cut(s) 929
StyD4I CCNGG 3 cut(s) 241, 818, 973
StyI CCWWGG 2 cut(s) 47, 1164
TaaI ACNGT 2 cut(s) 886, 1001
TaqI TCGA 3 cut(s) 353, 479, 1135
TasI AATT 9 cut(s) 93, 349, 382, 395, 489, 715, 895, 991, 1125
TauI GCSGC 2 cut(s) 1028, 1076
TfiI GAWTC 2 cut(s) 451, 743
Tru1I TTAA 9 cut(s) 96, 186, 315, 333, 348, 435, 648, 705, 939
Tru9I TTAA 9 cut(s) 96, 186, 315, 333, 348, 435, 648, 705, 939
TscAI CASTG 2 cut(s) 728, 1113
TseI GCWGC 3 cut(s) 81, 84, 878
TspDTI ATGAA 3 cut(s) 277, 408, 585
TspGWI ACGGA 2 cut(s) 281, 794
TspRI CASTG 2 cut(s) 728, 1113
Van91I CCANNNNNTGG 1 cut(s) 957
VpaK11BI GGWCC 2 cut(s) 407, 903
VspI ATTAAT 1 cut(s) 648
XapI RAATTY 3 cut(s) 395, 489, 715
XcmI CCANNNNNNNNNTGG 2 cut(s) 49, 111
XhoI CTCGAG 1 cut(s) 478
XmaJI CCTAGG 1 cut(s) 47
XspI CTAG 4 cut(s) 48, 555, 588, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.