MD09G1222500.v1.1

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000492
Physical Location & Seq
Reverse (-)
25952446 .. 25954680
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1222500.v1.1.491

Sequence Viewer

Length: 249 bp
ATGGGTTTGAGATGGGTGGTGGGTAATGGTAAGGAGATTCTCTTATGGACTCATTGTTGGGTTTTTTCTTACCCGTTGTTCCATCTTATACCAGAAACACAAAAGCAGAATATCAATTGTAATTTATGGGTAAGTGACTTTTTGAATAAATTATTAAGTATTCTGGATGCTGATATTGTCAAGAAAATTTGTCTTGTGATCATTCTTCTGGAGAGTTCTCTATTAAATCAGCGGGATTCAAAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

83

Amino Acids

9.57

Weight (kDa)

6.71

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 232
AcsI RAATTY 1 cut(s) 186
AgsI TTSAA 2 cut(s) 145, 240
ApoI RAATTY 1 cut(s) 186
BccI CCATC 2 cut(s) 6, 90
BclI TGATCA 1 cut(s) 198
BmsI GCATC 1 cut(s) 157
BpmI CTGGAG 1 cut(s) 230
BseGI GGATG 1 cut(s) 172
Bsp143I GATC 1 cut(s) 198
BspACI CCGC 1 cut(s) 232
BssMI GATC 1 cut(s) 198
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 1 cut(s) 201
BstMBI GATC 1 cut(s) 198
BtsCI GGATG 1 cut(s) 172
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
FaiI YATR 3 cut(s) 46, 89, 127
FauI CCCGC 1 cut(s) 225
FbaI TGATCA 1 cut(s) 198
FokI GGATG 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 230
HinfI GANTC 3 cut(s) 37, 49, 236
Hpy188III TCNNGA 3 cut(s) 164, 181, 209
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 1 cut(s) 198
LpnPI CCDG 3 cut(s) 105, 149, 194
LweI GCATC 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 1 cut(s) 197
MfeI CAATTG 1 cut(s) 115
MluCI AATT 4 cut(s) 115, 121, 149, 186
MlyI GAGTC 1 cut(s) 43
MseI TTAA 2 cut(s) 155, 224
MspA1I CMGCKG 1 cut(s) 232
MunI CAATTG 1 cut(s) 115
NdeII GATC 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 134
PfeI GAWTC 2 cut(s) 37, 236
PleI GAGTC 1 cut(s) 43
PpsI GAGTC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 155, 224
Sau3AI GATC 1 cut(s) 198
SchI GAGTC 1 cut(s) 43
SfaNI GCATC 1 cut(s) 157
SgeI CNNG 7 cut(s) 85, 104, 176, 193, 206, 221, 245
Sse9I AATT 4 cut(s) 115, 121, 149, 186
SsiI CCGC 1 cut(s) 232
TasI AATT 4 cut(s) 115, 121, 149, 186
TfiI GAWTC 2 cut(s) 37, 236
Tru1I TTAA 2 cut(s) 155, 224
Tru9I TTAA 2 cut(s) 155, 224
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
XapI RAATTY 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.