Rmu_sc0004406.1_g000009

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004406.1
OG0000492
Physical Location & Seq
Forward (+)
25658 .. 26143
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004406.1_g000009.1.cds

Sequence Viewer

Length: 486 bp
atggtggcgtggaacaaattttgtcaacctaaatccctgggtggactgggaatcagaccttcaactttcttcaataaggctgctttggctaagttggcatggaaaatctgcaatgatcaagacaattggtgggctcaaattgtgaggaaaaaataccttaggaaatcttcgttctttcaagttaaaaagaaacaaaccaactccatggcttggaggggagtgctggaaacaagagagctggttcttaaaggcatgcgttggatcataggcaatggtaagactgttaaattttggtcgtttaactggttctttgatttcccactcttcaacttacttaatgaaaaccaaagatcgaacatcaattggaataaagtagttgcagactacattgagaatggtagatggaacaaacacaaactgcttcattactttgaccagggtgttgtgtaccagatattgggaatccatattcctatcacggactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

161

Amino Acids

19.15

Weight (kDa)

10.13

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 210, 457
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 2 cut(s) 17, 287
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 2 cut(s) 210, 457
AgsI TTSAA 4 cut(s) 63, 73, 179, 328
AjnI CCWGG 2 cut(s) 36, 435
AluBI AGCT 1 cut(s) 238
AluI AGCT 1 cut(s) 238
AlwI GGATC 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 2 cut(s) 17, 287
AxyI CCTNAGG 1 cut(s) 158
BanII GRGCYC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 396
BciT130I CCWGG 2 cut(s) 38, 437
BclI TGATCA 1 cut(s) 115
BfaI CTAG 1 cut(s) 484
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 38, 437
BmrFI CCNGG 2 cut(s) 38, 437
BmrI ACTGGG 1 cut(s) 56
BmuI ACTGGG 1 cut(s) 56
BsaJI CCNNGG 4 cut(s) 36, 37, 204, 436
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 457
Bse1I ACTGG 2 cut(s) 51, 308
Bse21I CCTNAGG 1 cut(s) 158
Bse3DI GCAATG 2 cut(s) 118, 277
BseBI CCWGG 2 cut(s) 38, 437
BseDI CCNNGG 4 cut(s) 36, 37, 204, 436
BseLI CCNNNNNNNGG 2 cut(s) 210, 457
BseMI GCAATG 2 cut(s) 118, 277
BseNI ACTGG 2 cut(s) 51, 308
BseXI GCAGC 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 210, 457
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 3 cut(s) 115, 261, 350
Bsp19I CCATGG 1 cut(s) 204
BspPI GGATC 1 cut(s) 269
BsrDI GCAATG 2 cut(s) 118, 277
BsrI ACTGG 2 cut(s) 51, 308
BssECI CCNNGG 4 cut(s) 36, 37, 204, 436
BssMI GATC 3 cut(s) 115, 261, 350
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 38, 437
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 2 cut(s) 90, 158
BstDSI CCRYGG 1 cut(s) 204
BstKTI GATC 3 cut(s) 118, 264, 353
BstMBI GATC 3 cut(s) 115, 261, 350
BstMWI GCNNNNNNNGC 2 cut(s) 86, 95
BstNI CCWGG 2 cut(s) 38, 437
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 36, 435
BstV1I GCAGC 1 cut(s) 67
BstXI CCANNNNNNTGG 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 448
CviAII CATG 3 cut(s) 99, 205, 253
CviJI RGCY 5 cut(s) 80, 89, 134, 209, 238
CviKI_1 RGCY 5 cut(s) 80, 89, 134, 209, 238
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 2 cut(s) 90, 158
DpnI GATC 3 cut(s) 117, 263, 352
DpnII GATC 3 cut(s) 115, 261, 350
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 136
Eco81I CCTNAGG 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 36, 435
EcoT14I CCWWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 3 cut(s) 102, 208, 256
FaiI YATR 5 cut(s) 100, 206, 254, 266, 468
FatI CATG 3 cut(s) 98, 204, 252
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 81
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 484
GluI GCNGC 1 cut(s) 81
Hin1II CATG 3 cut(s) 102, 208, 256
HincII GTYRAC 1 cut(s) 26
HindII GTYRAC 1 cut(s) 26
HinfI GANTC 2 cut(s) 51, 462
Hpy166II GTNNAC 3 cut(s) 26, 44, 448
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 3 cut(s) 26, 44, 448
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 111, 380
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 95
HpyF3I CTNAG 2 cut(s) 90, 158
Hsp92II CATG 3 cut(s) 102, 208, 256
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 3 cut(s) 115, 261, 350
LpnPI CCDG 9 cut(s) 23, 32, 50, 209, 224, 289, 422, 449, 464
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 1 cut(s) 484
MalI GATC 3 cut(s) 117, 263, 352
MboI GATC 3 cut(s) 115, 261, 350
MboII GAAGA 3 cut(s) 61, 159, 316
MfeI CAATTG 2 cut(s) 124, 361
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 5 cut(s) 17, 124, 138, 287, 361
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 2 cut(s) 138, 207
MseI TTAA 5 cut(s) 183, 246, 285, 300, 336
MspR9I CCNGG 2 cut(s) 38, 437
MunI CAATTG 2 cut(s) 124, 361
MvaI CCWGG 2 cut(s) 38, 437
MwoI GCNNNNNNNGC 2 cut(s) 86, 95
NcoI CCATGG 1 cut(s) 204
NdeII GATC 3 cut(s) 115, 261, 350
NlaIII CATG 3 cut(s) 102, 208, 256
NspI RCATGY 1 cut(s) 256
PaeI GCATGC 1 cut(s) 256
PasI CCCWGGG 1 cut(s) 37
PfeI GAWTC 2 cut(s) 51, 462
PflMI CCANNNNNTGG 2 cut(s) 210, 457
PkrI GCNGC 1 cut(s) 82
Psp6I CCWGG 2 cut(s) 36, 435
PspGI CCWGG 2 cut(s) 36, 435
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
SaqAI TTAA 5 cut(s) 183, 246, 285, 300, 336
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 3 cut(s) 115, 261, 350
ScrFI CCNGG 2 cut(s) 38, 437
SduI GDGCHC 1 cut(s) 136
SetI ASST 4 cut(s) 31, 61, 159, 240
SphI GCATGC 1 cut(s) 256
Sse9I AATT 5 cut(s) 17, 124, 138, 287, 361
SspMI CTAG 1 cut(s) 484
StyD4I CCNGG 2 cut(s) 36, 435
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 283
TaqI TCGA 1 cut(s) 353
TasI AATT 5 cut(s) 17, 124, 138, 287, 361
TfiI GAWTC 2 cut(s) 51, 462
Tru1I TTAA 5 cut(s) 183, 246, 285, 300, 336
Tru9I TTAA 5 cut(s) 183, 246, 285, 300, 336
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 354, 413
Van91I CCANNNNNTGG 2 cut(s) 210, 457
XapI RAATTY 2 cut(s) 17, 287
XceI RCATGY 1 cut(s) 256
XspI CTAG 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.