Prupe.1G162400_v2.0.a1

Reverse transcriptase-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
13037003 .. 13038067
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G162400.1

Sequence Viewer

Length: 1065 bp
CTATTTCAGGACCAGCCATCCCACCCTCGTGTGGGCCTGCTTAAGAAAGTATGGAAGCTCAACATTCCTCTAAAAGTGAAGATTTTTGCTTGGTTGCTAATTCGTAAAAGAATTCAAGTGAGAGCCAGGCTTCATAGATTCATGCAACATATTAGTCTGATGTGTCCCTTTTGTCAAAGCTTACCTGAGACTATTCAACACATGTTTATGGACTGTCATTTTGCTAAGGATGTTTGGGCTCTTTCTCCTAATCTCATACCCCTTCCCTCGCAGACTGGTGATCTGTACATTTGGCTTCTGTCGCTGAGCCCCACGTCCACAAAGTCTGAATTGGACCCTTTCTCCAAAGCCCTCCTTATCTGTTGGCAAATCTGGGAGGCTAGGAATAATGTGGTGTTCCATGACTCTAAGGCCACCCTAGCTAGCTGTTTTCATGCTATTGCTTGTGTTGGTTTGGACTTTTGGAGGCTTAACTCGACGGCCAGATTTGACTCAGCTGATTCCATGATGATTAAATGGCATCCTCCTCCCACCGGCTGGATTAAGGTAAATTCTGATGGGTCTCTTATGAATTCTCATGCTTCCACAGGTTTTGTCATTCGGGATAGCGAGGGGCATGTCCTCATTGCGGGCTCCAACAATATTGGTGAAAATTCCATTAATGTTGCTGAATGTGTTGCTCTTCGTGATGGTCTTGCCGCTGCTCTTGATAGAGGATGGGATCGCATTGTGATTGAAGGGGATTCTAAACTTGTCATTGACAGTATCCGGGGTAAAGCTAACCCCCCTTGGTGTATCCAACAGATTATTCAAGATATTTGGGCCCTGTCTTCTTCTGTTACAAGCGTCCGGTTTCAACACGTCTTTAGGGAGGCTAACTTCACGGCGGATGCGGTTGCAAAATTAGGTCATGGTTTTTCTAATGAAGTTTTGAAGGAGCATGGACTCCCGCTATCTGTTAGGACCCCCTTTTATTTTGACCTCTTCAGGCGCTCTTGCCCGCGAGGCTTTCTTTTTGTTTTTAGAAATACAAAGTGTGTGACCTTCTTAATAGAATGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

355

Amino Acids

40.16

Weight (kDa)

8.88

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 537
AccII CGCG 1 cut(s) 1003
AciI CCGC 6 cut(s) 629, 699, 887, 893, 950, 1001
AclWI GGATC 1 cut(s) 729
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 4 cut(s) 111, 550, 571, 652
AcuI CTGAAG 1 cut(s) 970
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 5 cut(s) 31, 32, 533, 537, 628
AflII CTTAAG 1 cut(s) 41
AflIII ACRYGT 2 cut(s) 201, 859
AgsI TTSAA 6 cut(s) 116, 197, 737, 812, 857, 934
AjiI CACGTC 2 cut(s) 315, 862
AjnI CCWGG 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 792, 824
AleI CACNNNNGTG 1 cut(s) 27
AluBI AGCT 6 cut(s) 58, 180, 422, 426, 497, 779
AluI AGCT 6 cut(s) 58, 180, 422, 426, 497, 779
Alw26I GTCTC 2 cut(s) 182, 567
AlwI GGATC 1 cut(s) 729
AoxI GGCC 4 cut(s) 34, 411, 480, 822
ApaI GGGCCC 1 cut(s) 826
ApeKI GCWGC 1 cut(s) 701
ApoI RAATTY 4 cut(s) 111, 550, 571, 652
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AseI ATTAAT 1 cut(s) 660
AspLEI GCGC 1 cut(s) 993
AspS9I GGNCC 6 cut(s) 10, 34, 334, 822, 823, 963
AsuC2I CCSGG 1 cut(s) 770
AsuHPI GGTGA 2 cut(s) 290, 659
AsuNHI GCTAGC 1 cut(s) 422
AvaII GGWCC 3 cut(s) 10, 334, 963
BaeGI GKGCMC 1 cut(s) 826
BanII GRGCYC 4 cut(s) 241, 311, 635, 826
BauI CACGAG 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 822
BbvI GCAGC 1 cut(s) 688
BccI CCATC 4 cut(s) 25, 551, 683, 711
BceAI ACGGC 2 cut(s) 495, 900
BciT130I CCWGG 1 cut(s) 127
BciVI GTATCC 2 cut(s) 776, 806
BcnI CCSGG 1 cut(s) 770
BcoDI GTCTC 2 cut(s) 182, 567
BfaI CTAG 3 cut(s) 381, 419, 423
BfoI RGCGCY 1 cut(s) 994
BfrI CTTAAG 1 cut(s) 41
BfuI GTATCC 2 cut(s) 776, 806
BglI GCCNNNNNGGC 1 cut(s) 1005
BisI GCNGC 2 cut(s) 699, 702
BlpI GCTNAGC 1 cut(s) 305
BlsI GCNGC 2 cut(s) 700, 703
Bme1390I CCNGG 2 cut(s) 127, 770
Bme18I GGWCC 3 cut(s) 10, 334, 963
BmgBI CACGTC 2 cut(s) 315, 862
BmgT120I GGNCC 6 cut(s) 10, 34, 334, 822, 823, 963
BmiI GGNNCC 4 cut(s) 336, 634, 824, 965
BmrFI CCNGG 2 cut(s) 127, 770
BmsI GCATC 2 cut(s) 529, 880
BmtI GCTAGC 1 cut(s) 426
BpiI GAAGAC 1 cut(s) 822
Bpu10I CCTNAGC 1 cut(s) 225
Bpu1102I GCTNAGC 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 770
BsaI GGTCTC 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 769, 788
BsaWI WCCGGW 1 cut(s) 849
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 32, 533, 537, 628
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 624
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 769, 788
BseGI GGATG 5 cut(s) 17, 235, 520, 722, 895
BseLI CCNNNNNNNGG 5 cut(s) 31, 32, 533, 537, 628
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 3 cut(s) 177, 296, 507
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 516
BseSI GKGCMC 1 cut(s) 826
BseXI GCAGC 1 cut(s) 688
Bsh1236I CGCG 1 cut(s) 1003
BshFI GGCC 4 cut(s) 36, 413, 482, 824
BsiSI CCGG 3 cut(s) 534, 769, 850
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 5 cut(s) 31, 32, 533, 537, 628
BsmAI GTCTC 2 cut(s) 182, 567
BsmFI GGGAC 1 cut(s) 150
BsnI GGCC 4 cut(s) 36, 413, 482, 824
Bso31I GGTCTC 1 cut(s) 567
Bsp120I GGGCCC 1 cut(s) 822
Bsp1286I GDGCHC 4 cut(s) 241, 311, 635, 826
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 2 cut(s) 280, 721
Bsp1720I GCTNAGC 1 cut(s) 305
BspACI CCGC 6 cut(s) 629, 699, 887, 893, 950, 1001
BspANI GGCC 4 cut(s) 36, 413, 482, 824
BspCNI CTCAG 3 cut(s) 178, 297, 506
BspFNI CGCG 1 cut(s) 1003
BspLI GGNNCC 4 cut(s) 336, 634, 824, 965
BspOI GCTAGC 1 cut(s) 426
BspPI GGATC 1 cut(s) 729
BspQI GCTCTTC 1 cut(s) 687
BspTI CTTAAG 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 567
BsrDI GCAATG 1 cut(s) 624
BsrFI RCCGGY 1 cut(s) 533
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 2 cut(s) 769, 788
BssMI GATC 2 cut(s) 280, 721
BssSI CACGAG 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 788
Bst2BI CACGAG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 215, 764
Bst6I CTCTTC 2 cut(s) 687, 989
BstAFI CTTAAG 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 285
BstC8I GCNNGC 4 cut(s) 38, 424, 631, 1001
BstDEI CTNAG 5 cut(s) 186, 225, 305, 408, 493
BstF5I GGATG 5 cut(s) 17, 235, 520, 722, 895
BstFNI CGCG 1 cut(s) 1003
BstH2I RGCGCY 1 cut(s) 994
BstHHI GCGC 1 cut(s) 993
BstKTI GATC 2 cut(s) 283, 724
BstMAI GTCTC 2 cut(s) 182, 567
BstMBI GATC 2 cut(s) 280, 721
BstMWI GCNNNNNNNGC 3 cut(s) 301, 419, 1005
BstNI CCWGG 1 cut(s) 127
BstNSI RCATGY 2 cut(s) 205, 620
BstSCI CCNGG 2 cut(s) 125, 768
BstSLI GKGCMC 1 cut(s) 826
BstUI CGCG 1 cut(s) 1003
BstV1I GCAGC 1 cut(s) 688
BstV2I GAAGAC 1 cut(s) 822
BsuI GTATCC 2 cut(s) 776, 806
BsuRI GGCC 4 cut(s) 36, 413, 482, 824
BtrI CACGTC 2 cut(s) 315, 862
BtsCI GGATG 5 cut(s) 17, 235, 520, 722, 895
Cac8I GCNNGC 4 cut(s) 38, 424, 631, 1001
CfoI GCGC 1 cut(s) 993
Cfr10I RCCGGY 1 cut(s) 533
Cfr13I GGNCC 6 cut(s) 10, 34, 334, 822, 823, 963
CseI GACGC 1 cut(s) 835
Csp6I GTAC 1 cut(s) 286
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 9 cut(s) 142, 202, 401, 434, 505, 578, 617, 911, 941
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 5 cut(s) 186, 225, 305, 408, 493
DpnI GATC 2 cut(s) 282, 723
DpnII GATC 2 cut(s) 280, 721
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 2 cut(s) 687, 989
EarI CTCTTC 2 cut(s) 687, 989
EciI GGCGGA 1 cut(s) 902
Eco130I CCWWGG 1 cut(s) 788
Eco24I GRGCYC 4 cut(s) 241, 311, 635, 826
Eco31I GGTCTC 1 cut(s) 567
Eco47I GGWCC 3 cut(s) 10, 334, 963
Eco57I CTGAAG 1 cut(s) 970
EcoO109I RGGNCCY 2 cut(s) 823, 963
EcoRI GAATTC 2 cut(s) 111, 571
EcoRII CCWGG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 788
EcoT38I GRGCYC 4 cut(s) 241, 311, 635, 826
ErhI CCWWGG 1 cut(s) 788
FaeI CATG 9 cut(s) 145, 205, 404, 437, 508, 581, 620, 914, 944
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 1 cut(s) 150
FatI CATG 9 cut(s) 141, 201, 400, 433, 504, 577, 616, 910, 940
FauI CCCGC 3 cut(s) 622, 957, 1008
Fnu4HI GCNGC 2 cut(s) 699, 702
FokI GGATG 5 cut(s) 4, 242, 507, 729, 902
FriOI GRGCYC 4 cut(s) 241, 311, 635, 826
Fsp4HI GCNGC 2 cut(s) 699, 702
FspBI CTAG 3 cut(s) 381, 419, 423
GlaI GCGC 1 cut(s) 992
GluI GCNGC 2 cut(s) 699, 702
HaeII RGCGCY 1 cut(s) 994
HaeIII GGCC 4 cut(s) 36, 413, 482, 824
HapII CCGG 3 cut(s) 534, 769, 850
HgaI GACGC 1 cut(s) 835
HhaI GCGC 1 cut(s) 993
Hin1II CATG 9 cut(s) 145, 205, 404, 437, 508, 581, 620, 914, 944
Hin6I GCGC 1 cut(s) 991
HinP1I GCGC 1 cut(s) 991
HindIII AAGCTT 1 cut(s) 178
HinfI GANTC 6 cut(s) 138, 404, 491, 500, 743, 945
HpaII CCGG 3 cut(s) 534, 769, 850
HphI GGTGA 2 cut(s) 290, 659
Hpy166II GTNNAC 1 cut(s) 318
Hpy188I TCNGA 3 cut(s) 159, 328, 556
Hpy188III TCNNGA 5 cut(s) 8, 602, 686, 707, 812
Hpy8I GTNNAC 1 cut(s) 318
Hpy99I CGWCG 1 cut(s) 481
HpyAV CCTTC 4 cut(s) 272, 731, 928, 1054
HpyCH4III ACNGT 2 cut(s) 215, 764
HpyCH4IV ACGT 2 cut(s) 314, 861
HpyCH4V TGCA 2 cut(s) 145, 899
HpyF10VI GCNNNNNNNGC 3 cut(s) 301, 419, 1005
HpyF3I CTNAG 5 cut(s) 186, 225, 305, 408, 493
HpySE526I ACGT 2 cut(s) 314, 861
Hsp92II CATG 9 cut(s) 145, 205, 404, 437, 508, 581, 620, 914, 944
HspAI GCGC 1 cut(s) 991
Kzo9I GATC 2 cut(s) 280, 721
LguI GCTCTTC 1 cut(s) 687
LmnI GCTCC 2 cut(s) 638, 937
Lsp1109I GCAGC 1 cut(s) 688
LweI GCATC 2 cut(s) 529, 880
MaeI CTAG 3 cut(s) 381, 419, 423
MaeII ACGT 2 cut(s) 314, 861
MaeIII GTNAC 2 cut(s) 838, 1039
MalI GATC 2 cut(s) 282, 723
MboI GATC 2 cut(s) 280, 721
MboII GAAGA 5 cut(s) 91, 674, 822, 825, 976
MhlI GDGCHC 4 cut(s) 241, 311, 635, 826
MluCI AATT 7 cut(s) 99, 111, 329, 550, 571, 652, 902
MlyI GAGTC 3 cut(s) 398, 485, 939
MmeI TCCRAC 2 cut(s) 660, 823
MseI TTAA 6 cut(s) 42, 471, 513, 543, 660, 1049
MslI CAYNNNNRTG 2 cut(s) 27, 206
MspA1I CMGCKG 2 cut(s) 497, 701
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 3 cut(s) 534, 769, 850
MspR9I CCNGG 2 cut(s) 127, 770
MvaI CCWGG 1 cut(s) 127
MvnI CGCG 1 cut(s) 1003
MwoI GCNNNNNNNGC 3 cut(s) 301, 419, 1005
NciI CCSGG 1 cut(s) 770
NdeII GATC 2 cut(s) 280, 721
NheI GCTAGC 1 cut(s) 422
NlaIII CATG 9 cut(s) 145, 205, 404, 437, 508, 581, 620, 914, 944
NlaIV GGNNCC 4 cut(s) 336, 634, 824, 965
NmuCI GTSAC 1 cut(s) 1039
NspI RCATGY 2 cut(s) 205, 620
OliI CACNNNNGTG 1 cut(s) 27
PciI ACATGT 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 687
PfeI GAWTC 3 cut(s) 138, 500, 743
PflMI CCANNNNNTGG 1 cut(s) 537
PkrI GCNGC 2 cut(s) 700, 703
PleI GAGTC 3 cut(s) 398, 485, 939
PpsI GAGTC 3 cut(s) 398, 485, 939
PpuMI RGGWCCY 1 cut(s) 963
PscI ACATGT 1 cut(s) 201
PshBI ATTAAT 1 cut(s) 660
Psp5II RGGWCCY 1 cut(s) 963
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 4 cut(s) 336, 634, 824, 965
PspOMI GGGCCC 1 cut(s) 822
PspPI GGNCC 6 cut(s) 10, 34, 334, 822, 823, 963
PspPPI RGGWCCY 1 cut(s) 963
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 2 cut(s) 27, 206
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 6 cut(s) 42, 471, 513, 543, 660, 1049
SatI GCNGC 2 cut(s) 699, 702
Sau3AI GATC 2 cut(s) 280, 721
Sau96I GGNCC 6 cut(s) 10, 34, 334, 822, 823, 963
SchI GAGTC 3 cut(s) 398, 485, 939
ScrFI CCNGG 2 cut(s) 127, 770
SduI GDGCHC 4 cut(s) 241, 311, 635, 826
SfaNI GCATC 2 cut(s) 529, 880
SinI GGWCC 3 cut(s) 10, 334, 963
SmiMI CAYNNNNRTG 2 cut(s) 27, 206
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 7 cut(s) 99, 111, 329, 550, 571, 652, 902
SsiI CCGC 6 cut(s) 629, 699, 887, 893, 950, 1001
SspI AATATT 1 cut(s) 643
SspMI CTAG 3 cut(s) 381, 419, 423
StyD4I CCNGG 2 cut(s) 125, 768
StyI CCWWGG 1 cut(s) 788
TaaI ACNGT 2 cut(s) 215, 764
TaiI ACGT 2 cut(s) 317, 864
TaqI TCGA 1 cut(s) 476
TasI AATT 7 cut(s) 99, 111, 329, 550, 571, 652, 902
TatI WGTACW 1 cut(s) 285
TauI GCSGC 1 cut(s) 701
TfiI GAWTC 3 cut(s) 138, 500, 743
Tru1I TTAA 6 cut(s) 42, 471, 513, 543, 660, 1049
Tru9I TTAA 6 cut(s) 42, 471, 513, 543, 660, 1049
TseFI GTSAC 1 cut(s) 1039
TseI GCWGC 1 cut(s) 701
Tsp45I GTSAC 1 cut(s) 1039
TspDTI ATGAA 5 cut(s) 122, 130, 422, 584, 939
Van91I CCANNNNNTGG 1 cut(s) 537
Vha464I CTTAAG 1 cut(s) 41
VpaK11BI GGWCC 3 cut(s) 10, 334, 963
VspI ATTAAT 1 cut(s) 660
XapI RAATTY 4 cut(s) 111, 550, 571, 652
XceI RCATGY 2 cut(s) 205, 620
XspI CTAG 3 cut(s) 381, 419, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.