Rmu_sc0000498.1_g000050

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000498.1
OG0000492
Physical Location & Seq
Reverse (-)
195093 .. 195545
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000498.1_g000050.1.cds

Sequence Viewer

Length: 453 bp
atgagacagcttattcttaagggaatgagatggctagtaggtaatggtaagtcgattaaattttggacttttaattgggtgtttgactttcccttgattgaatttctacctgaggatgcaagaacaggtataaacattgatgaaacagtggcagagtacattcatgaccataattggaaccgtgataaattattaacgattctggacccaattgtggtgaaccagatacaaggtgtcccgattcctgttttcgatcaggaagatgagtgcatttggggcccttctatcaatggtaaatatatgattaaatctgctacatggctacaattacctgaagtcaatgttcataacaacttagatttactaaagaagctctggaagcttaatgttcgccctaagattcaactcttgggctggctactcttcagaggtaggcttaagacaagggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

150

Amino Acids

17.72

Weight (kDa)

8.73

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 59, 101
AcuI CTGAAG 2 cut(s) 354, 409
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 214
AflII CTTAAG 2 cut(s) 17, 437
AgsI TTSAA 2 cut(s) 101, 404
AluBI AGCT 3 cut(s) 10, 373, 382
AluI AGCT 3 cut(s) 10, 373, 382
AoxI GGCC 1 cut(s) 277
ApaI GGGCCC 1 cut(s) 281
ApoI RAATTY 2 cut(s) 59, 101
AspS9I GGNCC 3 cut(s) 205, 277, 278
AsuHPI GGTGA 1 cut(s) 229
AvaII GGWCC 1 cut(s) 205
AxyI CCTNAGG 1 cut(s) 111
BaeGI GKGCMC 1 cut(s) 281
BanII GRGCYC 1 cut(s) 281
BccI CCATC 1 cut(s) 24
BfaI CTAG 1 cut(s) 35
BfrI CTTAAG 2 cut(s) 17, 437
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 3 cut(s) 205, 277, 278
BmiI GGNNCC 4 cut(s) 179, 207, 278, 279
BmsI GCATC 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse21I CCTNAGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 102
BseSI GKGCMC 1 cut(s) 281
BshFI GGCC 1 cut(s) 279
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 1 cut(s) 279
Bsp120I GGGCCC 1 cut(s) 277
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 1 cut(s) 253
BspANI GGCC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 103
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 4 cut(s) 179, 207, 278, 279
BspTI CTTAAG 2 cut(s) 17, 437
BssMI GATC 1 cut(s) 253
Bst4CI ACNGT 2 cut(s) 148, 182
Bst6I CTCTTC 1 cut(s) 428
BstAFI CTTAAG 2 cut(s) 17, 437
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 3 cut(s) 111, 355, 396
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 2 cut(s) 276, 379
BstSLI GKGCMC 1 cut(s) 281
Bsu36I CCTNAGG 1 cut(s) 111
BsuRI GGCC 1 cut(s) 279
BtsCI GGATG 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 416
CciI TCATGA 1 cut(s) 163
Cfr13I GGNCC 3 cut(s) 205, 277, 278
Csp6I GTAC 1 cut(s) 157
CviAII CATG 2 cut(s) 164, 318
CviJI RGCY 9 cut(s) 10, 34, 279, 322, 373, 382, 414, 418, 436
CviKI_1 RGCY 9 cut(s) 10, 34, 279, 322, 373, 382, 414, 418, 436
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 3 cut(s) 111, 355, 396
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 428
EarI CTCTTC 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 354, 409
Eco81I CCTNAGG 1 cut(s) 111
EcoO109I RGGNCCY 2 cut(s) 277, 278
EcoT38I GRGCYC 1 cut(s) 281
FaeI CATG 2 cut(s) 167, 321
FaiI YATR 7 cut(s) 131, 165, 171, 300, 302, 319, 348
FaqI GGGAC 1 cut(s) 221
FatI CATG 2 cut(s) 163, 317
FokI GGATG 1 cut(s) 128
FriOI GRGCYC 1 cut(s) 281
FspBI CTAG 1 cut(s) 35
HaeIII GGCC 1 cut(s) 279
Hin1II CATG 2 cut(s) 167, 321
HindIII AAGCTT 1 cut(s) 380
HinfI GANTC 3 cut(s) 199, 241, 400
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 1 cut(s) 428
Hpy188III TCNNGA 5 cut(s) 164, 203, 238, 257, 376
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 291
HpyCH4III ACNGT 2 cut(s) 148, 182
HpyCH4V TGCA 2 cut(s) 119, 270
HpyF10VI GCNNNNNNNGC 2 cut(s) 276, 379
HpyF3I CTNAG 3 cut(s) 111, 355, 396
Hsp92II CATG 2 cut(s) 167, 321
Kzo9I GATC 1 cut(s) 253
LpnPI CCDG 9 cut(s) 111, 123, 188, 236, 242, 258, 345, 361, 400
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 35
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 2 cut(s) 272, 415
MfeI CAATTG 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 7 cut(s) 59, 73, 101, 172, 188, 210, 326
MnlI CCTC 2 cut(s) 106, 422
MseI TTAA 7 cut(s) 18, 57, 72, 194, 306, 384, 438
MspCI CTTAAG 2 cut(s) 17, 437
MunI CAATTG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 276, 379
NdeII GATC 1 cut(s) 253
NlaIII CATG 2 cut(s) 167, 321
NlaIV GGNNCC 4 cut(s) 179, 207, 278, 279
PagI TCATGA 1 cut(s) 163
PfeI GAWTC 3 cut(s) 199, 241, 400
PspN4I GGNNCC 4 cut(s) 179, 207, 278, 279
PspOMI GGGCCC 1 cut(s) 277
PspPI GGNCC 3 cut(s) 205, 277, 278
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
SaqAI TTAA 7 cut(s) 18, 57, 72, 194, 306, 384, 438
Sau3AI GATC 1 cut(s) 253
Sau96I GGNCC 3 cut(s) 205, 277, 278
SduI GDGCHC 1 cut(s) 281
SetI ASST 9 cut(s) 12, 43, 112, 130, 235, 334, 375, 384, 433
SfaNI GCATC 1 cut(s) 106
SinI GGWCC 1 cut(s) 205
SmlI CTYRAG 2 cut(s) 17, 437
SmoI CTYRAG 2 cut(s) 17, 437
Sse9I AATT 7 cut(s) 59, 73, 101, 172, 188, 210, 326
SspMI CTAG 1 cut(s) 35
TaaI ACNGT 2 cut(s) 148, 182
TaqI TCGA 2 cut(s) 53, 252
TasI AATT 7 cut(s) 59, 73, 101, 172, 188, 210, 326
TatI WGTACW 1 cut(s) 156
TfiI GAWTC 3 cut(s) 199, 241, 400
Tru1I TTAA 7 cut(s) 18, 57, 72, 194, 306, 384, 438
Tru9I TTAA 7 cut(s) 18, 57, 72, 194, 306, 384, 438
TscAI CASTG 1 cut(s) 153
TspDTI ATGAA 3 cut(s) 152, 156, 335
TspRI CASTG 1 cut(s) 153
Vha464I CTTAAG 2 cut(s) 17, 437
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 2 cut(s) 59, 101
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.