Rmu_sc0002735.1_g000022

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002735.1
OG0000492
Physical Location & Seq
Reverse (-)
86001 .. 86903
903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002735.1_g000022.1.cds

Sequence Viewer

Length: 903 bp
atgagatggattgttgggaatggtaagtccatcaaattctggaccttcaattgggtggttgaccgccctctttttgatattatcgctgatcatcttaaagatagaattgatctgaatgaaacagtagttgattatattgataatggggtttggaataaacctaaacttgcaaatgttttggataataatattgttgatcgtattactggtattcctatttcctatacttatcaagaggatgaatttgttttggggccttcatctattggccaattcacgataaagtctgcagattggctggacagcatggaaaaacacagcaatattaatcttttacataagctctggaaactgaatattcctctgaaggttaaaatttttagacggcttctactaagagggaggctaaaaacaagagacatactttgcaagtttggctatattgatgataatttctgtcttttatgcgataacattaataatgaaaccgctaactatttgtttggttcttgtgagtttactagtgaagtatggagattagctcaggtccaaactccaactaactgggacgaggaccacttgaaggttttccaagaaatgtttgttaaccaaccttatgataatgaaaaatttgcgaagatgataataatctgttggcaagtgtggaaagccataaatgaaactatctttagaggagctgttagcttccctaatgcagttgtagcagcatcggttgccatactaaatgatattaaaggaatggatcatccaaataggggggttgcctcacaaaacattccatccaaaattctttggcaacctcctcctagaagttttgtcaaaattaattttgatggccggctctggacaaagcaactattcagcaaggggttttattattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

300

Amino Acids

35.0

Weight (kDa)

8.48

Isoelectric Point (pI)

30.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000492)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01250
fragaria_vesca FvH4_1g20711 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g24611 FvH4_3g28252 FvH4_3g31041 FvH4_4g00611 FvH4_5g15581 FvH4_5g21911 FvH4_5g35851 FvH4_6g24331 FvH4_6g34741
malus_domestica MD07G1291800.v1.1 MD09G1222500.v1.1
prunus_persica Prupe.1G162400_v2.0.a1 Prupe.1G210400_v2.0.a1 Prupe.6G308200_v2.0.a1
pyrus_communis pycom05g02580 pycom12g09210 pycom12g15310 pycom16g09140
rosa_chinensis RchiOBHm_Chr3g0484711 RchiOBHm_Chr4g0393411 RchiOBHm_Chr4g0397521 RchiOBHm_Chr4g0404571 RchiOBHm_Chr4g0418351 RchiOBHm_Chr5g0060311 RchiOBHm_Chr6g0301391 RchiOBHm_Chr7g0229871
rosa_laevigata RLG00000007836 RLG00000025145
rosa_multiflora Rmu_co8327795.1_g000001 Rmu_sc0000469.1_g000005 Rmu_sc0000498.1_g000050 Rmu_sc0000558.1_g000007 Rmu_sc0000693.1_g000082 Rmu_sc0000711.1_g000011 Rmu_sc0000814.1_g000039 Rmu_sc0001366.1_g000005 Rmu_sc0002205.1_g000004 Rmu_sc0002283.1_g000086 Rmu_sc0002406.1_g000011 Rmu_sc0002735.1_g000022 Rmu_sc0003545.1_g000004 Rmu_sc0004406.1_g000009 Rmu_sc0006301.1_g000009 Rmu_sc0006754.1_g000004 Rmu_sc0007324.1_g000010 Rmu_sc0008199.1_g000002 Rmu_sc0008563.1_g000009 Rmu_sc0009777.1_g000007 Rmu_sc0010560.1_g000011 Rmu_sc0011095.1_g000004 Rmu_sc0012101.1_g000004 Rmu_sc0014150.1_g000009 Rmu_sc0020270.1_g000004 Rmu_sc0021327.1_g000001 Rmu_sc0031326.1_g000003 Rmu_ssc0000116.1_g000050 Rmu_ssc0000368.1_g000056
rosa_roxburghii Rroxscaffold_2G00110080 Rroxscaffold_2G00141700 Rroxscaffold_2G00142400
rosa_rugosa Rorug01G0104400 Rorug01G0204500 Rorug02G0225600 Rorug02G0262000.1 Rorug02G0526700 Rorug03G0082000 Rorug03G0102500.1 Rorug04G0106400 Rorug04G0200200 Rorug05G0021900.1 Rorug05G0240000 Rorug05G0326500 Rorug05G0529200 Rorug07G0136100
rosa_samantha Rh1AG352100 Rh6DG494100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 64, 489
AclWI GGATC 1 cut(s) 771
AcoI YGGCCR 2 cut(s) 268, 856
AcsI RAATTY 5 cut(s) 35, 242, 375, 629, 807
AcuI CTGAAG 1 cut(s) 386
AfiI CCNNNNNNNGG 3 cut(s) 51, 583, 776
AgsI TTSAA 2 cut(s) 49, 583
AhlI ACTAGT 1 cut(s) 521
AluBI AGCT 4 cut(s) 343, 542, 698, 705
AluI AGCT 4 cut(s) 343, 542, 698, 705
Alw26I GTCTC 1 cut(s) 411
AlwI GGATC 1 cut(s) 771
AoxI GGCC 3 cut(s) 254, 268, 856
ApeKI GCWGC 1 cut(s) 725
ApoI RAATTY 5 cut(s) 35, 242, 375, 629, 807
AseI ATTAAT 3 cut(s) 327, 477, 846
Asp700I GAANNNNTTC 1 cut(s) 587
AspS9I GGNCC 4 cut(s) 42, 254, 547, 574
AvaII GGWCC 3 cut(s) 42, 547, 574
BalI TGGCCA 1 cut(s) 270
BbvI GCAGC 1 cut(s) 737
BccI CCATC 3 cut(s) 38, 808, 848
BceAI ACGGC 1 cut(s) 401
BclI TGATCA 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 411
BcuI ACTAGT 1 cut(s) 521
BfaI CTAG 2 cut(s) 522, 828
BfmI CTRYAG 1 cut(s) 288
BisI GCNGC 1 cut(s) 726
BlsI GCNGC 1 cut(s) 727
Bme18I GGWCC 3 cut(s) 42, 547, 574
BmgT120I GGNCC 4 cut(s) 42, 254, 547, 574
BmiI GGNNCC 1 cut(s) 255
BmrI ACTGGG 1 cut(s) 574
BmsI GCATC 1 cut(s) 737
BmuI ACTGGG 1 cut(s) 574
BplI GAGNNNNNCTC 2 cut(s) 526, 558
Bpu10I CCTNAGC 1 cut(s) 543
BsaBI GATNNNNATC 1 cut(s) 647
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 583, 776
Bse118I RCCGGY 1 cut(s) 858
Bse1I ACTGG 2 cut(s) 211, 569
Bse8I GATNNNNATC 1 cut(s) 647
BseGI GGATG 3 cut(s) 244, 766, 800
BseJI GATNNNNATC 1 cut(s) 647
BseLI CCNNNNNNNGG 3 cut(s) 51, 583, 776
BseMII CTCAG 1 cut(s) 557
BseNI ACTGG 2 cut(s) 211, 569
BseRI GAGGAG 2 cut(s) 708, 813
BseXI GCAGC 1 cut(s) 737
BshFI GGCC 3 cut(s) 256, 270, 858
BsiSI CCGG 1 cut(s) 859
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 3 cut(s) 51, 583, 776
BsmAI GTCTC 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 581
BsnI GGCC 3 cut(s) 256, 270, 858
Bsp143I GATC 4 cut(s) 88, 109, 196, 763
BspACI CCGC 2 cut(s) 64, 489
BspANI GGCC 3 cut(s) 256, 270, 858
BspCNI CTCAG 1 cut(s) 556
BspLI GGNNCC 1 cut(s) 255
BspMAI CTGCAG 1 cut(s) 292
BspPI GGATC 1 cut(s) 771
BsrFI RCCGGY 1 cut(s) 858
BsrI ACTGG 2 cut(s) 211, 569
BssAI RCCGGY 1 cut(s) 858
BssMI GATC 4 cut(s) 88, 109, 196, 763
Bst4CI ACNGT 1 cut(s) 124
BstAPI GCANNNNNTGC 1 cut(s) 734
BstC8I GCNNGC 1 cut(s) 860
BstDEI CTNAG 2 cut(s) 395, 543
BstF5I GGATG 3 cut(s) 244, 766, 800
BstKTI GATC 4 cut(s) 91, 112, 199, 766
BstMAI GTCTC 1 cut(s) 411
BstMBI GATC 4 cut(s) 88, 109, 196, 763
BstMWI GCNNNNNNNGC 3 cut(s) 435, 722, 734
BstSFI CTRYAG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 737
BstXI CCANNNNNNTGG 1 cut(s) 564
BsuRI GGCC 3 cut(s) 256, 270, 858
BtsCI GGATG 3 cut(s) 244, 766, 800
Cac8I GCNNGC 1 cut(s) 860
Cfr10I RCCGGY 1 cut(s) 858
Cfr13I GGNCC 4 cut(s) 42, 254, 547, 574
CviAII CATG 1 cut(s) 307
DdeI CTNAG 2 cut(s) 395, 543
DpnI GATC 4 cut(s) 90, 111, 198, 765
DpnII GATC 4 cut(s) 88, 109, 196, 763
EaeI YGGCCR 2 cut(s) 268, 856
Eco47I GGWCC 3 cut(s) 42, 547, 574
Eco57I CTGAAG 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 254
FaeI CATG 1 cut(s) 310
FaqI GGGAC 1 cut(s) 581
FatI CATG 1 cut(s) 306
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 726
FokI GGATG 3 cut(s) 251, 753, 787
Fsp4HI GCNGC 1 cut(s) 726
FspBI CTAG 2 cut(s) 522, 828
GluI GCNGC 1 cut(s) 726
HaeIII GGCC 3 cut(s) 256, 270, 858
HapII CCGG 1 cut(s) 859
Hin1II CATG 1 cut(s) 310
HincII GTYRAC 2 cut(s) 61, 607
HindII GTYRAC 2 cut(s) 61, 607
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 1 cut(s) 859
Hpy166II GTNNAC 3 cut(s) 61, 519, 607
Hpy188I TCNGA 2 cut(s) 114, 366
Hpy188III TCNNGA 5 cut(s) 40, 233, 277, 346, 865
Hpy8I GTNNAC 3 cut(s) 61, 519, 607
HpyAV CCTTC 4 cut(s) 55, 267, 361, 577
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 4 cut(s) 170, 290, 429, 716
HpyF10VI GCNNNNNNNGC 3 cut(s) 435, 722, 734
HpyF3I CTNAG 2 cut(s) 395, 543
Hsp92II CATG 1 cut(s) 310
KroI GCCGGC 1 cut(s) 858
KroNI GCCGGC 1 cut(s) 860
Ksp22I TGATCA 1 cut(s) 88
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 4 cut(s) 88, 109, 196, 763
LmnI GCTCC 1 cut(s) 695
LpnPI CCDG 8 cut(s) 25, 192, 284, 331, 530, 550, 850, 872
Lsp1109I GCAGC 1 cut(s) 737
LweI GCATC 1 cut(s) 737
MaeI CTAG 2 cut(s) 522, 828
MalI GATC 4 cut(s) 90, 111, 198, 765
MboI GATC 4 cut(s) 88, 109, 196, 763
MboII GAAGA 1 cut(s) 649
MfeI CAATTG 1 cut(s) 49
MlsI TGGCCA 1 cut(s) 270
MluNI TGGCCA 1 cut(s) 270
MmeI TCCRAC 1 cut(s) 581
Mox20I TGGCCA 1 cut(s) 270
MroNI GCCGGC 1 cut(s) 858
MroXI GAANNNNTTC 1 cut(s) 587
MscI TGGCCA 1 cut(s) 270
MseI TTAA 7 cut(s) 96, 327, 372, 477, 606, 753, 846
Msp20I TGGCCA 1 cut(s) 270
MspI CCGG 1 cut(s) 859
MunI CAATTG 1 cut(s) 49
MwoI GCNNNNNNNGC 3 cut(s) 435, 722, 734
NaeI GCCGGC 1 cut(s) 860
NdeII GATC 4 cut(s) 88, 109, 196, 763
NgoMIV GCCGGC 1 cut(s) 858
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 1 cut(s) 255
PdiI GCCGGC 1 cut(s) 860
PdmI GAANNNNTTC 1 cut(s) 587
PkrI GCNGC 1 cut(s) 727
PshBI ATTAAT 3 cut(s) 327, 477, 846
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 4 cut(s) 42, 254, 547, 574
PstI CTGCAG 1 cut(s) 292
SaqAI TTAA 7 cut(s) 96, 327, 372, 477, 606, 753, 846
SatI GCNGC 1 cut(s) 726
Sau3AI GATC 4 cut(s) 88, 109, 196, 763
Sau96I GGNCC 4 cut(s) 42, 254, 547, 574
SfaNI GCATC 1 cut(s) 737
SfcI CTRYAG 1 cut(s) 288
SinI GGWCC 3 cut(s) 42, 547, 574
SpeI ACTAGT 1 cut(s) 521
SsiI CCGC 2 cut(s) 64, 489
SspI AATATT 3 cut(s) 190, 325, 358
SspMI CTAG 2 cut(s) 522, 828
TaaI ACNGT 1 cut(s) 124
Tru1I TTAA 7 cut(s) 96, 327, 372, 477, 606, 753, 846
Tru9I TTAA 7 cut(s) 96, 327, 372, 477, 606, 753, 846
TseI GCWGC 1 cut(s) 725
TspDTI ATGAA 6 cut(s) 132, 249, 255, 498, 639, 693
VpaK11BI GGWCC 3 cut(s) 42, 547, 574
VspI ATTAAT 3 cut(s) 327, 477, 846
XapI RAATTY 5 cut(s) 35, 242, 375, 629, 807
XmnI GAANNNNTTC 1 cut(s) 587
XspI CTAG 2 cut(s) 522, 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.